Result of FASTA (omim) for pF1KB7942
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7942, 245 aa
  1>>>pF1KB7942 245 - 245 aa - 245 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7367+/-0.000338; mu= 14.3391+/- 0.022
 mean_var=125.6754+/-25.188, 0's: 0 Z-trim(118.3): 304  B-trim: 24 in 1/52
 Lambda= 0.114406
 statistics sampled from 30761 (31142) to 30761 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.365), width:  16
 Scan time:  7.190

The best scores are:                                      opt bits E(85289)
NP_073207 (OMIM: 167420,202650) paired mesoderm ho ( 245) 1592 273.3 2.6e-73
NP_008833 (OMIM: 167420,202650) paired mesoderm ho ( 217) 1304 225.8   5e-59
XP_006711451 (OMIM: 167420,202650) PREDICTED: pair ( 198) 1285 222.6 4.1e-58
NP_057391 (OMIM: 604675) paired mesoderm homeobox  ( 253)  877 155.4 9.1e-38
XP_016870292 (OMIM: 604675) PREDICTED: paired meso ( 193)  755 135.1 8.8e-32
NP_001297089 (OMIM: 106210,120430,136520,148190,16 ( 286)  356 69.4 7.6e-12
NP_001297090 (OMIM: 106210,120430,136520,148190,16 ( 286)  356 69.4 7.6e-12
NP_001245394 (OMIM: 106210,120430,136520,148190,16 ( 422)  356 69.6 9.8e-12
NP_000271 (OMIM: 106210,120430,136520,148190,16555 ( 422)  356 69.6 9.8e-12
NP_001245393 (OMIM: 106210,120430,136520,148190,16 ( 422)  356 69.6 9.8e-12
NP_001121084 (OMIM: 106210,120430,136520,148190,16 ( 422)  356 69.6 9.8e-12
NP_001245392 (OMIM: 106210,120430,136520,148190,16 ( 436)  356 69.6   1e-11
NP_001297087 (OMIM: 106210,120430,136520,148190,16 ( 436)  356 69.6   1e-11
NP_001595 (OMIM: 106210,120430,136520,148190,16555 ( 436)  356 69.6   1e-11
NP_001245391 (OMIM: 106210,120430,136520,148190,16 ( 436)  356 69.6   1e-11
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346)  353 69.0 1.2e-11
NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562)  354 69.4 1.5e-11
NP_001297088 (OMIM: 106210,120430,136520,148190,16 ( 401)  352 68.9 1.5e-11
NP_852126 (OMIM: 122880,148820,193500,268220,60659 ( 403)  343 67.4 4.2e-11
NP_852125 (OMIM: 122880,148820,193500,268220,60659 ( 407)  343 67.4 4.2e-11
NP_003915 (OMIM: 209880,603851,613013) paired meso ( 314)  341 67.0 4.5e-11
NP_852122 (OMIM: 122880,148820,193500,268220,60659 ( 479)  343 67.5 4.7e-11
NP_001120838 (OMIM: 122880,148820,193500,268220,60 ( 483)  343 67.5 4.7e-11
NP_852123 (OMIM: 122880,148820,193500,268220,60659 ( 484)  343 67.5 4.7e-11
NP_068745 (OMIM: 605420,609597,613451,615529) home ( 411)  342 67.3 4.8e-11
NP_852124 (OMIM: 122880,148820,193500,268220,60659 ( 505)  343 67.6 4.9e-11
NP_005160 (OMIM: 602078,602753) paired mesoderm ho ( 284)  336 66.1 7.4e-11
NP_001263380 (OMIM: 606701) dorsal root ganglia ho ( 263)  330 65.1 1.4e-10
NP_039236 (OMIM: 167410,268220) paired box protein ( 518)  328 65.1 2.8e-10
NP_116142 (OMIM: 605726,610362,610381,613757) reti ( 184)  321 63.4 3.1e-10
NP_001306003 (OMIM: 605726,610362,610381,613757) r ( 230)  322 63.7 3.2e-10
NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343)  321 63.7 4.7e-10
NP_001128726 (OMIM: 167410,268220) paired box prot ( 505)  321 63.9   6e-10
NP_002575 (OMIM: 167410,268220) paired box protein ( 520)  321 63.9 6.1e-10
XP_006713790 (OMIM: 602504) PREDICTED: short statu ( 343)  314 62.6   1e-09
NP_003021 (OMIM: 602504) short stature homeobox pr ( 355)  314 62.6 1.1e-09
NP_006874 (OMIM: 312865,400020) short stature home ( 225)  311 61.9 1.1e-09
XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX  ( 231)  311 61.9 1.1e-09
NP_001157150 (OMIM: 602504) short stature homeobox ( 319)  311 62.0 1.4e-09
NP_008913 (OMIM: 601527,613456) ALX homeobox prote ( 326)  311 62.1 1.4e-09
NP_006875 (OMIM: 602504) short stature homeobox pr ( 331)  311 62.1 1.4e-09
NP_001191327 (OMIM: 137600,180500,180550,601542,60 ( 317)  310 61.9 1.6e-09
NP_700475 (OMIM: 137600,180500,180550,601542,60422 ( 317)  310 61.9 1.6e-09
NP_001191326 (OMIM: 137600,180500,180550,601542,60 ( 317)  310 61.9 1.6e-09
XP_016862543 (OMIM: 602504) PREDICTED: short statu ( 204)  305 60.8 2.1e-09
XP_016862542 (OMIM: 602504) PREDICTED: short statu ( 204)  305 60.8 2.1e-09
NP_001290437 (OMIM: 612019) intestine-specific hom ( 245)  304 60.8 2.6e-09
NP_000442 (OMIM: 312865,400020) short stature home ( 292)  303 60.7 3.3e-09
NP_000316 (OMIM: 137600,180500,180550,601542,60422 ( 324)  303 60.7 3.5e-09
XP_006713791 (OMIM: 602504) PREDICTED: short statu ( 190)  297 59.5 4.9e-09


>>NP_073207 (OMIM: 167420,202650) paired mesoderm homeob  (245 aa)
 initn: 1592 init1: 1592 opt: 1592  Z-score: 1437.0  bits: 273.3 E(85289): 2.6e-73
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 245 aa overlap (1-245:1-245)

               10        20        30        40        50        60
pF1KB7 MTSSYGHVLERQPALGGRLDSPGNLDTLQAKKNFSVSHLLDLEEAGDMVAAQADENVGEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 MTSSYGHVLERQPALGGRLDSPGNLDTLQAKKNFSVSHLLDLEEAGDMVAAQADENVGEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 GRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 AFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 AFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PRPAPRPTDYLSWGTASPYSAMATYSATCANNSPAQGINMANSIANLRLKAKEYSLQRNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 PRPAPRPTDYLSWGTASPYSAMATYSATCANNSPAQGINMANSIANLRLKAKEYSLQRNQ
              190       200       210       220       230       240

            
pF1KB7 VPTVN
       :::::
NP_073 VPTVN
            

>>NP_008833 (OMIM: 167420,202650) paired mesoderm homeob  (217 aa)
 initn: 1304 init1: 1304 opt: 1304  Z-score: 1180.7  bits: 225.8 E(85289): 5e-59
Smith-Waterman score: 1304; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
pF1KB7 MTSSYGHVLERQPALGGRLDSPGNLDTLQAKKNFSVSHLLDLEEAGDMVAAQADENVGEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MTSSYGHVLERQPALGGRLDSPGNLDTLQAKKNFSVSHLLDLEEAGDMVAAQADENVGEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 GRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 AFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 AFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PRPAPRPTDYLSWGTASPYSAMATYSATCANNSPAQGINMANSIANLRLKAKEYSLQRNQ
       :::::::::::::::::::                                         
NP_008 PRPAPRPTDYLSWGTASPYRSSSLPRCCLHEGLHNGF                       
              190       200       210                              

>>XP_006711451 (OMIM: 167420,202650) PREDICTED: paired m  (198 aa)
 initn: 1285 init1: 1285 opt: 1285  Z-score: 1164.2  bits: 222.6 E(85289): 4.1e-58
Smith-Waterman score: 1285; 100.0% identity (100.0% similar) in 198 aa overlap (48-245:1-198)

        20        30        40        50        60        70       
pF1KB7 RLDSPGNLDTLQAKKNFSVSHLLDLEEAGDMVAAQADENVGEAGRSLLESPGLTSGSDTP
                                     ::::::::::::::::::::::::::::::
XP_006                               MVAAQADENVGEAGRSLLESPGLTSGSDTP
                                             10        20        30

        80        90       100       110       120       130       
pF1KB7 QQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEAR
               40        50        60        70        80        90

       140       150       160       170       180       190       
pF1KB7 VQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIVPRPAPRPTDYLSWGTAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIVPRPAPRPTDYLSWGTAS
              100       110       120       130       140       150

       200       210       220       230       240     
pF1KB7 PYSAMATYSATCANNSPAQGINMANSIANLRLKAKEYSLQRNQVPTVN
       ::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PYSAMATYSATCANNSPAQGINMANSIANLRLKAKEYSLQRNQVPTVN
              160       170       180       190        

>>NP_057391 (OMIM: 604675) paired mesoderm homeobox prot  (253 aa)
 initn: 868 init1: 492 opt: 877  Z-score: 799.1  bits: 155.4 E(85289): 9.1e-38
Smith-Waterman score: 878; 62.7% identity (78.7% similar) in 249 aa overlap (12-245:12-253)

               10         20           30        40           50   
pF1KB7 MTSSYGHVLERQPALG-GRLDSPGNL---DTLQAKKNFSVSHLLDLEE---AGDMVA---
                  .:::: :    :  :   :  ::.:::::::::::::   :: ..:   
NP_057 MDSAAAAFALDKPALGPGPPPPPPALGPGDCAQARKNFSVSHLLDLEEVAAAGRLAARPG
               10        20        30        40        50        60

               60        70        80            90       100      
pF1KB7 AQADENVGEAGRSLLESPGLTSGSDTPQQDND----QLNSEEKKKRKQRRNRTTFNSSQL
       :.:.   : :.:   :  : .:::..  ::..      .:  :.:.::::::::::::::
NP_057 ARAEAREG-AAR---EPSGGSSGSEAAPQDGECPSPGRGSAAKRKKKQRRNRTTFNSSQL
                70           80        90       100       110      

        110       120       130       140       150       160      
pF1KB7 QALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLK
       :::::::::::::::::::.:::::::.::::::::::::::::::::::::...:::::
NP_057 QALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRRNERAMLASRSASLLK
        120       130       140       150       160       170      

        170       180       190       200       210        220     
pF1KB7 SYSGDVTAVEQPIVPRPAPRPTDYLSWGTASPYSAMATYSATCANNSPAQ-GINMANSIA
       ::: .. :.:::..:::.    ::::: ..::::..  ::   ....::  :.:::::::
NP_057 SYSQEA-AIEQPVAPRPTALSPDYLSWTASSPYSTVPPYSP--GSSGPATPGVNMANSIA
        180        190       200       210         220       230   

         230       240     
pF1KB7 NLRLKAKEYSLQRNQVPTVN
       .:::::::.::...::::::
NP_057 SLRLKAKEFSLHHSQVPTVN
           240       250   

>>XP_016870292 (OMIM: 604675) PREDICTED: paired mesoderm  (193 aa)
 initn: 750 init1: 492 opt: 755  Z-score: 691.6  bits: 135.1 E(85289): 8.8e-32
Smith-Waterman score: 755; 73.3% identity (90.1% similar) in 161 aa overlap (86-245:36-193)

          60        70        80        90       100       110     
pF1KB7 NVGEAGRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFER
                                     :  :.:.:::::::::::::::::::::::
XP_016 RETGPERSGHRLKVTELGCGEGECPSPGRGSAAKRKKKQRRNRTTFNSSQLQALERVFER
          10        20        30        40        50        60     

         120       130       140       150       160       170     
pF1KB7 THYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAV
       ::::::::::.:::::::.::::::::::::::::::::::::...:::::::: .. :.
XP_016 THYPDAFVREELARRVNLSEARVQVWFQNRRAKFRRNERAMLASRSASLLKSYSQEA-AI
          70        80        90       100       110       120     

         180       190       200       210        220       230    
pF1KB7 EQPIVPRPAPRPTDYLSWGTASPYSAMATYSATCANNSPAQ-GINMANSIANLRLKAKEY
       :::..:::.    ::::: ..::::..  ::   ....::  :.:::::::.:::::::.
XP_016 EQPVAPRPTALSPDYLSWTASSPYSTVPPYSP--GSSGPATPGVNMANSIASLRLKAKEF
          130       140       150         160       170       180  

          240     
pF1KB7 SLQRNQVPTVN
       ::...::::::
XP_016 SLHHSQVPTVN
            190   

>>NP_001297089 (OMIM: 106210,120430,136520,148190,165550  (286 aa)
 initn: 298 init1: 298 opt: 356  Z-score: 333.7  bits: 69.4 E(85289): 7.6e-12
Smith-Waterman score: 356; 38.2% identity (66.0% similar) in 191 aa overlap (66-245:45-229)

          40        50        60        70         80        90    
pF1KB7 VSHLLDLEEAGDMVAAQADENVGEAGRSLLESPGLTSGS-DTPQQDNDQLNSEEKKKRKQ
                                     :. : ...: ..  .:.:. . . . ::: 
NP_001 GQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKL
           20        30        40        50        60        70    

          100       110       120       130       140       150    
pF1KB7 RRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER
       .::::.:.. :..:::. ::::::::.:.:: :: ...: :::.::::.:::::.::.:.
NP_001 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK
           80        90       100       110       120       130    

          160           170       180       190       200          
pF1KB7 AMLANKNASLLKSY----SGDVTAVEQPIVPRPAPRPTDYLSWGTASPYSAMA---TYSA
            ..::   :.    :.  :.: ::: :.:.  :.. .. :.    .  :   ::::
NP_001 LRNQRRQASNTPSHIPISSSFSTSVYQPI-PQPTT-PVSSFTSGSMLGRTDTALTNTYSA
          140       150       160         170       180       190  

       210       220          230       240                        
pF1KB7 TCANNSPAQGINMANSIAN---LRLKAKEYSLQRNQVPTVN                   
             :  ...:::..     .  ... :: .    :.::                   
NP_001 L----PPMPSFTMANNLPMQPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQ
                200       210       220       230       240        

NP_001 PMGTSGTTSTGLISPGVSVPVQVPGSEPDMSQYWPRLQ
      250       260       270       280      

>>NP_001297090 (OMIM: 106210,120430,136520,148190,165550  (286 aa)
 initn: 298 init1: 298 opt: 356  Z-score: 333.7  bits: 69.4 E(85289): 7.6e-12
Smith-Waterman score: 356; 38.2% identity (66.0% similar) in 191 aa overlap (66-245:45-229)

          40        50        60        70         80        90    
pF1KB7 VSHLLDLEEAGDMVAAQADENVGEAGRSLLESPGLTSGS-DTPQQDNDQLNSEEKKKRKQ
                                     :. : ...: ..  .:.:. . . . ::: 
NP_001 GQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKL
           20        30        40        50        60        70    

          100       110       120       130       140       150    
pF1KB7 RRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER
       .::::.:.. :..:::. ::::::::.:.:: :: ...: :::.::::.:::::.::.:.
NP_001 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK
           80        90       100       110       120       130    

          160           170       180       190       200          
pF1KB7 AMLANKNASLLKSY----SGDVTAVEQPIVPRPAPRPTDYLSWGTASPYSAMA---TYSA
            ..::   :.    :.  :.: ::: :.:.  :.. .. :.    .  :   ::::
NP_001 LRNQRRQASNTPSHIPISSSFSTSVYQPI-PQPTT-PVSSFTSGSMLGRTDTALTNTYSA
          140       150       160         170       180       190  

       210       220          230       240                        
pF1KB7 TCANNSPAQGINMANSIAN---LRLKAKEYSLQRNQVPTVN                   
             :  ...:::..     .  ... :: .    :.::                   
NP_001 L----PPMPSFTMANNLPMQPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQ
                200       210       220       230       240        

NP_001 PMGTSGTTSTGLISPGVSVPVQVPGSEPDMSQYWPRLQ
      250       260       270       280      

>>NP_001245394 (OMIM: 106210,120430,136520,148190,165550  (422 aa)
 initn: 298 init1: 298 opt: 356  Z-score: 331.7  bits: 69.6 E(85289): 9.8e-12
Smith-Waterman score: 356; 38.2% identity (66.0% similar) in 191 aa overlap (66-245:181-365)

          40        50        60        70         80        90    
pF1KB7 VSHLLDLEEAGDMVAAQADENVGEAGRSLLESPGLTSGS-DTPQQDNDQLNSEEKKKRKQ
                                     :. : ...: ..  .:.:. . . . ::: 
NP_001 GQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKL
              160       170       180       190       200       210

          100       110       120       130       140       150    
pF1KB7 RRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER
       .::::.:.. :..:::. ::::::::.:.:: :: ...: :::.::::.:::::.::.:.
NP_001 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK
              220       230       240       250       260       270

          160           170       180       190       200          
pF1KB7 AMLANKNASLLKSY----SGDVTAVEQPIVPRPAPRPTDYLSWGTASPYSAMA---TYSA
            ..::   :.    :.  :.: ::: :.:.  :.. .. :.    .  :   ::::
NP_001 LRNQRRQASNTPSHIPISSSFSTSVYQPI-PQPTT-PVSSFTSGSMLGRTDTALTNTYSA
              280       290        300        310       320        

       210       220          230       240                        
pF1KB7 TCANNSPAQGINMANSIAN---LRLKAKEYSLQRNQVPTVN                   
             :  ...:::..     .  ... :: .    :.::                   
NP_001 L----PPMPSFTMANNLPMQPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQ
          330       340       350       360       370       380    

NP_001 PMGTSGTTSTGLISPGVSVPVQVPGSEPDMSQYWPRLQ
          390       400       410       420  

>>NP_000271 (OMIM: 106210,120430,136520,148190,165550,19  (422 aa)
 initn: 298 init1: 298 opt: 356  Z-score: 331.7  bits: 69.6 E(85289): 9.8e-12
Smith-Waterman score: 356; 38.2% identity (66.0% similar) in 191 aa overlap (66-245:181-365)

          40        50        60        70         80        90    
pF1KB7 VSHLLDLEEAGDMVAAQADENVGEAGRSLLESPGLTSGS-DTPQQDNDQLNSEEKKKRKQ
                                     :. : ...: ..  .:.:. . . . ::: 
NP_000 GQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKL
              160       170       180       190       200       210

          100       110       120       130       140       150    
pF1KB7 RRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER
       .::::.:.. :..:::. ::::::::.:.:: :: ...: :::.::::.:::::.::.:.
NP_000 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK
              220       230       240       250       260       270

          160           170       180       190       200          
pF1KB7 AMLANKNASLLKSY----SGDVTAVEQPIVPRPAPRPTDYLSWGTASPYSAMA---TYSA
            ..::   :.    :.  :.: ::: :.:.  :.. .. :.    .  :   ::::
NP_000 LRNQRRQASNTPSHIPISSSFSTSVYQPI-PQPTT-PVSSFTSGSMLGRTDTALTNTYSA
              280       290        300        310       320        

       210       220          230       240                        
pF1KB7 TCANNSPAQGINMANSIAN---LRLKAKEYSLQRNQVPTVN                   
             :  ...:::..     .  ... :: .    :.::                   
NP_000 L----PPMPSFTMANNLPMQPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQ
          330       340       350       360       370       380    

NP_000 PMGTSGTTSTGLISPGVSVPVQVPGSEPDMSQYWPRLQ
          390       400       410       420  

>>NP_001245393 (OMIM: 106210,120430,136520,148190,165550  (422 aa)
 initn: 298 init1: 298 opt: 356  Z-score: 331.7  bits: 69.6 E(85289): 9.8e-12
Smith-Waterman score: 356; 38.2% identity (66.0% similar) in 191 aa overlap (66-245:181-365)

          40        50        60        70         80        90    
pF1KB7 VSHLLDLEEAGDMVAAQADENVGEAGRSLLESPGLTSGS-DTPQQDNDQLNSEEKKKRKQ
                                     :. : ...: ..  .:.:. . . . ::: 
NP_001 GQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKL
              160       170       180       190       200       210

          100       110       120       130       140       150    
pF1KB7 RRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER
       .::::.:.. :..:::. ::::::::.:.:: :: ...: :::.::::.:::::.::.:.
NP_001 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK
              220       230       240       250       260       270

          160           170       180       190       200          
pF1KB7 AMLANKNASLLKSY----SGDVTAVEQPIVPRPAPRPTDYLSWGTASPYSAMA---TYSA
            ..::   :.    :.  :.: ::: :.:.  :.. .. :.    .  :   ::::
NP_001 LRNQRRQASNTPSHIPISSSFSTSVYQPI-PQPTT-PVSSFTSGSMLGRTDTALTNTYSA
              280       290        300        310       320        

       210       220          230       240                        
pF1KB7 TCANNSPAQGINMANSIAN---LRLKAKEYSLQRNQVPTVN                   
             :  ...:::..     .  ... :: .    :.::                   
NP_001 L----PPMPSFTMANNLPMQPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQ
          330       340       350       360       370       380    

NP_001 PMGTSGTTSTGLISPGVSVPVQVPGSEPDMSQYWPRLQ
          390       400       410       420  




245 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:14:03 2016 done: Sat Nov  5 10:14:04 2016
 Total Scan time:  7.190 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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