Result of FASTA (omim) for pF1KB9875
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9875, 527 aa
  1>>>pF1KB9875 527 - 527 aa - 527 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6526+/-0.000377; mu= 16.7835+/- 0.023
 mean_var=83.6629+/-15.964, 0's: 0 Z-trim(113.6): 41  B-trim: 52 in 1/52
 Lambda= 0.140219
 statistics sampled from 23055 (23086) to 23055 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.271), width:  16
 Scan time:  8.770

The best scores are:                                      opt bits E(85289)
NP_001230715 (OMIM: 179616,233650,601457,603554) V ( 527) 3643 747.2 2.8e-215
NP_001230714 (OMIM: 179616,233650,601457,603554) V ( 527) 3643 747.2 2.8e-215
NP_000527 (OMIM: 179616,233650,601457,603554) V(D) ( 527) 3643 747.2 2.8e-215


>>NP_001230715 (OMIM: 179616,233650,601457,603554) V(D)J  (527 aa)
 initn: 3643 init1: 3643 opt: 3643  Z-score: 3985.9  bits: 747.2 E(85289): 2.8e-215
Smith-Waterman score: 3643; 100.0% identity (100.0% similar) in 527 aa overlap (1-527:1-527)

               10        20        30        40        50        60
pF1KB9 MSLQMVTVSNNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHLDVKHNHVKLKPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLQMVTVSNNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHLDVKHNHVKLKPT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IFSKDSCYLPPLRYPATCTFKGSLESEKHQYIIHGGKTPNNEVSDKIYVMSIVCKNNKKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IFSKDSCYLPPLRYPATCTFKGSLESEKHQYIIHGGKTPNNEVSDKIYVMSIVCKNNKKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 TFRCTEKDLVGDVPEARYGHSINVVYSRGKSMGVLFGGRSYMPSTHRTTEKWNSVADCLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFRCTEKDLVGDVPEARYGHSINVVYSRGKSMGVLFGGRSYMPSTHRTTEKWNSVADCLP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 CVFLVDFEFGCATSYILPELQDGLSFHVSIAKNDTIYILGGHSLANNIRPANLYRIRVDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CVFLVDFEFGCATSYILPELQDGLSFHVSIAKNDTIYILGGHSLANNIRPANLYRIRVDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 PLGSPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMICNIISLEDNKIEIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLGSPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMICNIISLEDNKIEIR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 EMETPDWTPDIKHSKIWFGSNMGNGTVFLGIPGDNKQVVSEGFYFYMLKCAEDDTNEEQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EMETPDWTPDIKHSKIWFGSNMGNGTVFLGIPGDNKQVVSEGFYFYMLKCAEDDTNEEQT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 TFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDESETGYWITCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDESETGYWITCC
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLAERTLIHLSAGSNKYYCNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLAERTLIHLSAGSNKYYCNE
              430       440       450       460       470       480

              490       500       510       520       
pF1KB9 HVEIARALHTPQRVLPLKKPPMKSLRKKGSGKILTPAKKSFLRRLFD
       :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HVEIARALHTPQRVLPLKKPPMKSLRKKGSGKILTPAKKSFLRRLFD
              490       500       510       520       

>>NP_001230714 (OMIM: 179616,233650,601457,603554) V(D)J  (527 aa)
 initn: 3643 init1: 3643 opt: 3643  Z-score: 3985.9  bits: 747.2 E(85289): 2.8e-215
Smith-Waterman score: 3643; 100.0% identity (100.0% similar) in 527 aa overlap (1-527:1-527)

               10        20        30        40        50        60
pF1KB9 MSLQMVTVSNNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHLDVKHNHVKLKPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLQMVTVSNNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHLDVKHNHVKLKPT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IFSKDSCYLPPLRYPATCTFKGSLESEKHQYIIHGGKTPNNEVSDKIYVMSIVCKNNKKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IFSKDSCYLPPLRYPATCTFKGSLESEKHQYIIHGGKTPNNEVSDKIYVMSIVCKNNKKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 TFRCTEKDLVGDVPEARYGHSINVVYSRGKSMGVLFGGRSYMPSTHRTTEKWNSVADCLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFRCTEKDLVGDVPEARYGHSINVVYSRGKSMGVLFGGRSYMPSTHRTTEKWNSVADCLP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 CVFLVDFEFGCATSYILPELQDGLSFHVSIAKNDTIYILGGHSLANNIRPANLYRIRVDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CVFLVDFEFGCATSYILPELQDGLSFHVSIAKNDTIYILGGHSLANNIRPANLYRIRVDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 PLGSPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMICNIISLEDNKIEIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLGSPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMICNIISLEDNKIEIR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 EMETPDWTPDIKHSKIWFGSNMGNGTVFLGIPGDNKQVVSEGFYFYMLKCAEDDTNEEQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EMETPDWTPDIKHSKIWFGSNMGNGTVFLGIPGDNKQVVSEGFYFYMLKCAEDDTNEEQT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 TFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDESETGYWITCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDESETGYWITCC
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLAERTLIHLSAGSNKYYCNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLAERTLIHLSAGSNKYYCNE
              430       440       450       460       470       480

              490       500       510       520       
pF1KB9 HVEIARALHTPQRVLPLKKPPMKSLRKKGSGKILTPAKKSFLRRLFD
       :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HVEIARALHTPQRVLPLKKPPMKSLRKKGSGKILTPAKKSFLRRLFD
              490       500       510       520       

>>NP_000527 (OMIM: 179616,233650,601457,603554) V(D)J re  (527 aa)
 initn: 3643 init1: 3643 opt: 3643  Z-score: 3985.9  bits: 747.2 E(85289): 2.8e-215
Smith-Waterman score: 3643; 100.0% identity (100.0% similar) in 527 aa overlap (1-527:1-527)

               10        20        30        40        50        60
pF1KB9 MSLQMVTVSNNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHLDVKHNHVKLKPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSLQMVTVSNNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHLDVKHNHVKLKPT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IFSKDSCYLPPLRYPATCTFKGSLESEKHQYIIHGGKTPNNEVSDKIYVMSIVCKNNKKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IFSKDSCYLPPLRYPATCTFKGSLESEKHQYIIHGGKTPNNEVSDKIYVMSIVCKNNKKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 TFRCTEKDLVGDVPEARYGHSINVVYSRGKSMGVLFGGRSYMPSTHRTTEKWNSVADCLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TFRCTEKDLVGDVPEARYGHSINVVYSRGKSMGVLFGGRSYMPSTHRTTEKWNSVADCLP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 CVFLVDFEFGCATSYILPELQDGLSFHVSIAKNDTIYILGGHSLANNIRPANLYRIRVDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 CVFLVDFEFGCATSYILPELQDGLSFHVSIAKNDTIYILGGHSLANNIRPANLYRIRVDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 PLGSPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMICNIISLEDNKIEIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PLGSPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMICNIISLEDNKIEIR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 EMETPDWTPDIKHSKIWFGSNMGNGTVFLGIPGDNKQVVSEGFYFYMLKCAEDDTNEEQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 EMETPDWTPDIKHSKIWFGSNMGNGTVFLGIPGDNKQVVSEGFYFYMLKCAEDDTNEEQT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 TFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDESETGYWITCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDESETGYWITCC
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLAERTLIHLSAGSNKYYCNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLAERTLIHLSAGSNKYYCNE
              430       440       450       460       470       480

              490       500       510       520       
pF1KB9 HVEIARALHTPQRVLPLKKPPMKSLRKKGSGKILTPAKKSFLRRLFD
       :::::::::::::::::::::::::::::::::::::::::::::::
NP_000 HVEIARALHTPQRVLPLKKPPMKSLRKKGSGKILTPAKKSFLRRLFD
              490       500       510       520       




527 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:57:09 2016 done: Fri Nov  4 19:57:10 2016
 Total Scan time:  8.770 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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