Result of FASTA (omim) for pF1KB9854
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9854, 389 aa
  1>>>pF1KB9854 389 - 389 aa - 389 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8219+/-0.00036; mu= 20.2939+/- 0.023
 mean_var=66.8575+/-13.243, 0's: 0 Z-trim(113.2): 9  B-trim: 0 in 0/51
 Lambda= 0.156855
 statistics sampled from 22431 (22435) to 22431 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.263), width:  16
 Scan time:  8.320

The best scores are:                                      opt bits E(85289)
NP_001164045 (OMIM: 300976) protein FAM46D [Homo s ( 389) 2616 600.9 1.7e-171
NP_689843 (OMIM: 300976) protein FAM46D [Homo sapi ( 389) 2616 600.9 1.7e-171
NP_060103 (OMIM: 611357) protein FAM46A [Homo sapi ( 442) 1544 358.3   2e-98
NP_060179 (OMIM: 613952) protein FAM46C [Homo sapi ( 391) 1502 348.8 1.3e-95


>>NP_001164045 (OMIM: 300976) protein FAM46D [Homo sapie  (389 aa)
 initn: 2616 init1: 2616 opt: 2616  Z-score: 3199.8  bits: 600.9 E(85289): 1.7e-171
Smith-Waterman score: 2616; 99.7% identity (100.0% similar) in 389 aa overlap (1-389:1-389)

               10        20        30        40        50        60
pF1KB9 MSEIRFTNLTWDQVITLDQVLDEVIPIHGKGNFPTMEVKPKDIIHVVKDQLIGQGIIVKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSEIRFTNLTWDQVITLDQVLDEVIPIHGKGNFPTMEVKPKDIIHVVKDQLIGQGIIVKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ARLNGSVASYILASHNGISYKDLDVIFGVELPGNEEFQVVKDAVLDCLLDFLPKDVKKEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARLNGSVASYILASHNGISYKDLDVIFGVELPGNEEFQVVKDAVLDCLLDFLPKDVKKEK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LSPDIMKDAYVQKLVKVCNGHDCWSLISLSNNTGKNLELKFVSSLRRQFEFSVDSFQIVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSPDIMKDAYVQKLVKVCNGHDCWSLISLSNNTGKNLELKFVSSLRRQFEFSVDSFQIVL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DPMLEFYSDKNAKLTKESYPVVVAESMYGDFQEAMTHLQHKLICTRKPEEIRGGGLLKYC
       ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPMLDFYSDKNAKLTKESYPVVVAESMYGDFQEAMTHLQHKLICTRKPEEIRGGGLLKYC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 SLLVHGFKPACMSEIKNLERYMCSRFFIDFPHIEEQQKKIESYLHNHFIGEGMTKYDYLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLLVHGFKPACMSEIKNLERYMCSRFFIDFPHIEEQQKKIESYLHNHFIGEGMTKYDYLM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 TLHGVVNESTVCLMSYERRQILHLITMMALKVLGELNILPNTQKVTCFYQPAPYFAAEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLHGVVNESTVCLMSYERRQILHLITMMALKVLGELNILPNTQKVTCFYQPAPYFAAEAR
              310       320       330       340       350       360

              370       380         
pF1KB9 YPIYVIPEPPPVSFQPYHPLHFRGSNGMS
       :::::::::::::::::::::::::::::
NP_001 YPIYVIPEPPPVSFQPYHPLHFRGSNGMS
              370       380         

>>NP_689843 (OMIM: 300976) protein FAM46D [Homo sapiens]  (389 aa)
 initn: 2616 init1: 2616 opt: 2616  Z-score: 3199.8  bits: 600.9 E(85289): 1.7e-171
Smith-Waterman score: 2616; 99.7% identity (100.0% similar) in 389 aa overlap (1-389:1-389)

               10        20        30        40        50        60
pF1KB9 MSEIRFTNLTWDQVITLDQVLDEVIPIHGKGNFPTMEVKPKDIIHVVKDQLIGQGIIVKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MSEIRFTNLTWDQVITLDQVLDEVIPIHGKGNFPTMEVKPKDIIHVVKDQLIGQGIIVKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ARLNGSVASYILASHNGISYKDLDVIFGVELPGNEEFQVVKDAVLDCLLDFLPKDVKKEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 ARLNGSVASYILASHNGISYKDLDVIFGVELPGNEEFQVVKDAVLDCLLDFLPKDVKKEK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LSPDIMKDAYVQKLVKVCNGHDCWSLISLSNNTGKNLELKFVSSLRRQFEFSVDSFQIVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 LSPDIMKDAYVQKLVKVCNGHDCWSLISLSNNTGKNLELKFVSSLRRQFEFSVDSFQIVL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DPMLEFYSDKNAKLTKESYPVVVAESMYGDFQEAMTHLQHKLICTRKPEEIRGGGLLKYC
       ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 DPMLDFYSDKNAKLTKESYPVVVAESMYGDFQEAMTHLQHKLICTRKPEEIRGGGLLKYC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 SLLVHGFKPACMSEIKNLERYMCSRFFIDFPHIEEQQKKIESYLHNHFIGEGMTKYDYLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 SLLVHGFKPACMSEIKNLERYMCSRFFIDFPHIEEQQKKIESYLHNHFIGEGMTKYDYLM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 TLHGVVNESTVCLMSYERRQILHLITMMALKVLGELNILPNTQKVTCFYQPAPYFAAEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 TLHGVVNESTVCLMSYERRQILHLITMMALKVLGELNILPNTQKVTCFYQPAPYFAAEAR
              310       320       330       340       350       360

              370       380         
pF1KB9 YPIYVIPEPPPVSFQPYHPLHFRGSNGMS
       :::::::::::::::::::::::::::::
NP_689 YPIYVIPEPPPVSFQPYHPLHFRGSNGMS
              370       380         

>>NP_060103 (OMIM: 611357) protein FAM46A [Homo sapiens]  (442 aa)
 initn: 1524 init1: 1034 opt: 1544  Z-score: 1888.0  bits: 358.3 E(85289): 2e-98
Smith-Waterman score: 1544; 62.9% identity (85.7% similar) in 364 aa overlap (9-372:66-427)

                                     10        20        30        
pF1KB9                       MSEIRFTNLTWDQVITLDQVLDEVIPIHGKGNFPTMEV
                                     :.:.::  :: .:.:.:::::.:::::.:.
NP_060 DFGGGDFGGGGSFGGHCLDYCESPTAHCNVLNWEQVQRLDGILSETIPIHGRGNFPTLEL
          40        50        60        70        80        90     

       40        50        60        70        80        90        
pF1KB9 KPKDIIHVVKDQLIGQGIIVKDARLNGSVASYILASHNGISYKDLDVIFGVELPGNEEFQ
       .:. :..::. .:  . : :.:.:::::.::..: . .:..:::::.:: ..: :. :::
NP_060 QPSLIVKVVRRRLAEKRIGVRDVRLNGSAASHVLHQDSGLGYKDLDLIFCADLRGEGEFQ
         100       110       120       130       140       150     

      100       110       120       130       140       150        
pF1KB9 VVKDAVLDCLLDFLPKDVKKEKLSPDIMKDAYVQKLVKVCNGHDCWSLISLSNNTGKNLE
       .:::.::::::::::. :.:::..:  .:.:::::.:::::  : :::::::::.:::.:
NP_060 TVKDVVLDCLLDFLPEGVNKEKITPLTLKEAYVQKMVKVCNDSDRWSLISLSNNSGKNVE
         160       170       180       190       200       210     

      160       170       180       190       200       210        
pF1KB9 LKFVSSLRRQFEFSVDSFQIVLDPMLEFYSDKNAKLTKESYPVVVAESMYGDFQEAMTHL
       ::::.::::::::::::::: :: .: ::  ..  .:.  .:....::.:::::::. ::
NP_060 LKFVDSLRRQFEFSVDSFQIKLDSLLLFYECSENPMTETFHPTIIGESVYGDFQEAFDHL
         220       230       240       250       260       270     

      220       230       240       250       260       270        
pF1KB9 QHKLICTRKPEEIRGGGLLKYCSLLVHGFKPACMSEIKNLERYMCSRFFIDFPHIEEQQK
        .:.: ::.:::::::::::::.:::.::.::  .:::.:.:::::::::::  : :::.
NP_060 CNKIIATRNPEEIRGGGLLKYCNLLVRGFRPAS-DEIKTLQRYMCSRFFIDFSDIGEQQR
         280       290       300        310       320       330    

      280       290       300       310       320       330        
pF1KB9 KIESYLHNHFIGEGMTKYDYLMTLHGVVNESTVCLMSYERRQILHLITMMALKVLGELNI
       :.::::.:::.:    ::.:::::::::::::::::..:::: :.::::.:..::.. :.
NP_060 KLESYLQNHFVGLEDRKYEYLMTLHGVVNESTVCLMGHERRQTLNLITMLAIRVLADQNV
          340       350       360       370       380       390    

      340       350       360       370       380         
pF1KB9 LPNTQKVTCFYQPAPYFAAEARYPIYVIPEPPPVSFQPYHPLHFRGSNGMS
       .::. .:::.:::::: .:.: .  : : .  ::                 
NP_060 IPNVANVTCYYQPAPY-VADANFSNYYIAQVQPVFTCQQQTYSTWLPCN  
          400       410        420       430       440    

>>NP_060179 (OMIM: 613952) protein FAM46C [Homo sapiens]  (391 aa)
 initn: 1490 init1: 1465 opt: 1502  Z-score: 1837.3  bits: 348.8 E(85289): 1.3e-95
Smith-Waterman score: 1502; 59.6% identity (84.2% similar) in 374 aa overlap (4-377:12-384)

                       10        20        30        40        50  
pF1KB9         MSEIRFTNLTWDQVITLDQVLDEVIPIHGKGNFPTMEVKPKDIIHVVKDQLI
                  . :. :.::::  : .:: ::.::::.:::::.:.  :::...:...: 
NP_060 MAEESSCTRDCMSFSVLNWDQVSRLHEVLTEVVPIHGRGNFPTLEITLKDIVQTVRSRLE
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KB9 GQGIIVKDARLNGSVASYILASHNGISYKDLDVIFGVELPGNEEFQVVKDAVLDCLLDFL
         :: :.:.:::::.:...:.. ::.. ::::.:: : :: . :::.:.:.::  ::.::
NP_060 EAGIKVHDVRLNGSAAGHVLVKDNGLGCKDLDLIFHVALPTEAEFQLVRDVVLCSLLNFL
               70        80        90       100       110       120

            120       130       140       150       160       170  
pF1KB9 PKDVKKEKLSPDIMKDAYVQKLVKVCNGHDCWSLISLSNNTGKNLELKFVSSLRRQFEFS
       :. :.: :.::  .:.::::::::::.  : ::::::::..:::.:::::.:.:::::::
NP_060 PEGVNKLKISPVTLKEAYVQKLVKVCTDTDRWSLISLSNKNGKNVELKFVDSIRRQFEFS
              130       140       150       160       170       180

            180       190       200       210       220       230  
pF1KB9 VDSFQIVLDPMLEFYSDKNAKLTKESYPVVVAESMYGDFQEAMTHLQHKLICTRKPEEIR
       ::::::.:: .: ::. .:  .... .:.:..:::::::.::. :::..:: :..:::::
NP_060 VDSFQIILDSLLFFYDCSNNPISEHFHPTVIGESMYGDFEEAFDHLQNRLIATKNPEEIR
              190       200       210       220       230       240

            240       250       260       270       280       290  
pF1KB9 GGGLLKYCSLLVHGFKPACMSEIKNLERYMCSRFFIDFPHIEEQQKKIESYLHNHFIGEG
       ::::::: .:::. :.:. . :::.:::::::::::::: : :::.:.:.::.:::  : 
NP_060 GGGLLKYSNLLVRDFRPTDQEEIKTLERYMCSRFFIDFPDILEQQRKLETYLQNHFAEEE
              250       260       270       280       290       300

            300       310       320       330       340       350  
pF1KB9 MTKYDYLMTLHGVVNESTVCLMSYERRQILHLITMMALKVLGELNILPNTQKVTCFYQPA
        .:::::: :. ::::::::::..:::: :.::...::.::.: ::.:.. .:::.::::
NP_060 RSKYDYLMILRRVVNESTVCLMGHERRQTLNLISLLALRVLAEQNIIPSATNVTCYYQPA
              310       320       330       340       350       360

            360       370       380         
pF1KB9 PYFAAEARYPIYVIPEPPPVSFQPYHPLHFRGSNGMS
       :: .... .  : . .:: .  :::            
NP_060 PY-VSDGNFSNYYVAHPPVTYSQPYPTWLPCN     
               370       380       390      




389 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:48:10 2016 done: Fri Nov  4 19:48:11 2016
 Total Scan time:  8.320 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com