Result of FASTA (ccds) for pF1KB9854
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9854, 389 aa
  1>>>pF1KB9854 389 - 389 aa - 389 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6899+/-0.000876; mu= 15.0464+/- 0.053
 mean_var=68.1756+/-13.397, 0's: 0 Z-trim(106.0): 13  B-trim: 0 in 0/50
 Lambda= 0.155332
 statistics sampled from 8729 (8733) to 8729 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.268), width:  16
 Scan time:  2.750

The best scores are:                                      opt bits E(32554)
CCDS14446.1 FAM46D gene_id:169966|Hs108|chrX       ( 389) 2616 595.2 3.3e-170
CCDS34489.1 FAM46A gene_id:55603|Hs108|chr6        ( 442) 1544 355.0 7.7e-98
CCDS896.1 FAM46C gene_id:54855|Hs108|chr1          ( 391) 1502 345.6 4.7e-95
CCDS294.2 FAM46B gene_id:115572|Hs108|chr1         ( 425) 1282 296.3 3.5e-80


>>CCDS14446.1 FAM46D gene_id:169966|Hs108|chrX            (389 aa)
 initn: 2616 init1: 2616 opt: 2616  Z-score: 3169.2  bits: 595.2 E(32554): 3.3e-170
Smith-Waterman score: 2616; 99.7% identity (100.0% similar) in 389 aa overlap (1-389:1-389)

               10        20        30        40        50        60
pF1KB9 MSEIRFTNLTWDQVITLDQVLDEVIPIHGKGNFPTMEVKPKDIIHVVKDQLIGQGIIVKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSEIRFTNLTWDQVITLDQVLDEVIPIHGKGNFPTMEVKPKDIIHVVKDQLIGQGIIVKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ARLNGSVASYILASHNGISYKDLDVIFGVELPGNEEFQVVKDAVLDCLLDFLPKDVKKEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ARLNGSVASYILASHNGISYKDLDVIFGVELPGNEEFQVVKDAVLDCLLDFLPKDVKKEK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LSPDIMKDAYVQKLVKVCNGHDCWSLISLSNNTGKNLELKFVSSLRRQFEFSVDSFQIVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LSPDIMKDAYVQKLVKVCNGHDCWSLISLSNNTGKNLELKFVSSLRRQFEFSVDSFQIVL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DPMLEFYSDKNAKLTKESYPVVVAESMYGDFQEAMTHLQHKLICTRKPEEIRGGGLLKYC
       ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DPMLDFYSDKNAKLTKESYPVVVAESMYGDFQEAMTHLQHKLICTRKPEEIRGGGLLKYC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 SLLVHGFKPACMSEIKNLERYMCSRFFIDFPHIEEQQKKIESYLHNHFIGEGMTKYDYLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SLLVHGFKPACMSEIKNLERYMCSRFFIDFPHIEEQQKKIESYLHNHFIGEGMTKYDYLM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 TLHGVVNESTVCLMSYERRQILHLITMMALKVLGELNILPNTQKVTCFYQPAPYFAAEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TLHGVVNESTVCLMSYERRQILHLITMMALKVLGELNILPNTQKVTCFYQPAPYFAAEAR
              310       320       330       340       350       360

              370       380         
pF1KB9 YPIYVIPEPPPVSFQPYHPLHFRGSNGMS
       :::::::::::::::::::::::::::::
CCDS14 YPIYVIPEPPPVSFQPYHPLHFRGSNGMS
              370       380         

>>CCDS34489.1 FAM46A gene_id:55603|Hs108|chr6             (442 aa)
 initn: 1524 init1: 1034 opt: 1544  Z-score: 1870.0  bits: 355.0 E(32554): 7.7e-98
Smith-Waterman score: 1544; 62.9% identity (85.7% similar) in 364 aa overlap (9-372:66-427)

                                     10        20        30        
pF1KB9                       MSEIRFTNLTWDQVITLDQVLDEVIPIHGKGNFPTMEV
                                     :.:.::  :: .:.:.:::::.:::::.:.
CCDS34 DFGGGDFGGGGSFGGHCLDYCESPTAHCNVLNWEQVQRLDGILSETIPIHGRGNFPTLEL
          40        50        60        70        80        90     

       40        50        60        70        80        90        
pF1KB9 KPKDIIHVVKDQLIGQGIIVKDARLNGSVASYILASHNGISYKDLDVIFGVELPGNEEFQ
       .:. :..::. .:  . : :.:.:::::.::..: . .:..:::::.:: ..: :. :::
CCDS34 QPSLIVKVVRRRLAEKRIGVRDVRLNGSAASHVLHQDSGLGYKDLDLIFCADLRGEGEFQ
         100       110       120       130       140       150     

      100       110       120       130       140       150        
pF1KB9 VVKDAVLDCLLDFLPKDVKKEKLSPDIMKDAYVQKLVKVCNGHDCWSLISLSNNTGKNLE
       .:::.::::::::::. :.:::..:  .:.:::::.:::::  : :::::::::.:::.:
CCDS34 TVKDVVLDCLLDFLPEGVNKEKITPLTLKEAYVQKMVKVCNDSDRWSLISLSNNSGKNVE
         160       170       180       190       200       210     

      160       170       180       190       200       210        
pF1KB9 LKFVSSLRRQFEFSVDSFQIVLDPMLEFYSDKNAKLTKESYPVVVAESMYGDFQEAMTHL
       ::::.::::::::::::::: :: .: ::  ..  .:.  .:....::.:::::::. ::
CCDS34 LKFVDSLRRQFEFSVDSFQIKLDSLLLFYECSENPMTETFHPTIIGESVYGDFQEAFDHL
         220       230       240       250       260       270     

      220       230       240       250       260       270        
pF1KB9 QHKLICTRKPEEIRGGGLLKYCSLLVHGFKPACMSEIKNLERYMCSRFFIDFPHIEEQQK
        .:.: ::.:::::::::::::.:::.::.::  .:::.:.:::::::::::  : :::.
CCDS34 CNKIIATRNPEEIRGGGLLKYCNLLVRGFRPAS-DEIKTLQRYMCSRFFIDFSDIGEQQR
         280       290       300        310       320       330    

      280       290       300       310       320       330        
pF1KB9 KIESYLHNHFIGEGMTKYDYLMTLHGVVNESTVCLMSYERRQILHLITMMALKVLGELNI
       :.::::.:::.:    ::.:::::::::::::::::..:::: :.::::.:..::.. :.
CCDS34 KLESYLQNHFVGLEDRKYEYLMTLHGVVNESTVCLMGHERRQTLNLITMLAIRVLADQNV
          340       350       360       370       380       390    

      340       350       360       370       380         
pF1KB9 LPNTQKVTCFYQPAPYFAAEARYPIYVIPEPPPVSFQPYHPLHFRGSNGMS
       .::. .:::.:::::: .:.: .  : : .  ::                 
CCDS34 IPNVANVTCYYQPAPY-VADANFSNYYIAQVQPVFTCQQQTYSTWLPCN  
          400       410        420       430       440    

>>CCDS896.1 FAM46C gene_id:54855|Hs108|chr1               (391 aa)
 initn: 1490 init1: 1465 opt: 1502  Z-score: 1820.0  bits: 345.6 E(32554): 4.7e-95
Smith-Waterman score: 1502; 59.6% identity (84.2% similar) in 374 aa overlap (4-377:12-384)

                       10        20        30        40        50  
pF1KB9         MSEIRFTNLTWDQVITLDQVLDEVIPIHGKGNFPTMEVKPKDIIHVVKDQLI
                  . :. :.::::  : .:: ::.::::.:::::.:.  :::...:...: 
CCDS89 MAEESSCTRDCMSFSVLNWDQVSRLHEVLTEVVPIHGRGNFPTLEITLKDIVQTVRSRLE
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KB9 GQGIIVKDARLNGSVASYILASHNGISYKDLDVIFGVELPGNEEFQVVKDAVLDCLLDFL
         :: :.:.:::::.:...:.. ::.. ::::.:: : :: . :::.:.:.::  ::.::
CCDS89 EAGIKVHDVRLNGSAAGHVLVKDNGLGCKDLDLIFHVALPTEAEFQLVRDVVLCSLLNFL
               70        80        90       100       110       120

            120       130       140       150       160       170  
pF1KB9 PKDVKKEKLSPDIMKDAYVQKLVKVCNGHDCWSLISLSNNTGKNLELKFVSSLRRQFEFS
       :. :.: :.::  .:.::::::::::.  : ::::::::..:::.:::::.:.:::::::
CCDS89 PEGVNKLKISPVTLKEAYVQKLVKVCTDTDRWSLISLSNKNGKNVELKFVDSIRRQFEFS
              130       140       150       160       170       180

            180       190       200       210       220       230  
pF1KB9 VDSFQIVLDPMLEFYSDKNAKLTKESYPVVVAESMYGDFQEAMTHLQHKLICTRKPEEIR
       ::::::.:: .: ::. .:  .... .:.:..:::::::.::. :::..:: :..:::::
CCDS89 VDSFQIILDSLLFFYDCSNNPISEHFHPTVIGESMYGDFEEAFDHLQNRLIATKNPEEIR
              190       200       210       220       230       240

            240       250       260       270       280       290  
pF1KB9 GGGLLKYCSLLVHGFKPACMSEIKNLERYMCSRFFIDFPHIEEQQKKIESYLHNHFIGEG
       ::::::: .:::. :.:. . :::.:::::::::::::: : :::.:.:.::.:::  : 
CCDS89 GGGLLKYSNLLVRDFRPTDQEEIKTLERYMCSRFFIDFPDILEQQRKLETYLQNHFAEEE
              250       260       270       280       290       300

            300       310       320       330       340       350  
pF1KB9 MTKYDYLMTLHGVVNESTVCLMSYERRQILHLITMMALKVLGELNILPNTQKVTCFYQPA
        .:::::: :. ::::::::::..:::: :.::...::.::.: ::.:.. .:::.::::
CCDS89 RSKYDYLMILRRVVNESTVCLMGHERRQTLNLISLLALRVLAEQNIIPSATNVTCYYQPA
              310       320       330       340       350       360

            360       370       380         
pF1KB9 PYFAAEARYPIYVIPEPPPVSFQPYHPLHFRGSNGMS
       :: .... .  : . .:: .  :::            
CCDS89 PY-VSDGNFSNYYVAHPPVTYSQPYPTWLPCN     
               370       380       390      

>>CCDS294.2 FAM46B gene_id:115572|Hs108|chr1              (425 aa)
 initn: 1227 init1: 1093 opt: 1282  Z-score: 1553.0  bits: 296.3 E(32554): 3.5e-80
Smith-Waterman score: 1282; 52.5% identity (79.0% similar) in 366 aa overlap (6-370:49-412)

                                        10        20        30     
pF1KB9                          MSEIRFTNLTWDQVITLDQVLDEVIPIHGKGNFPT
                                     ...:.: ::  :: .:.: :::::.:::::
CCDS29 GTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWPQVKRLDALLSEPIPIHGRGNFPT
       20        30        40        50        60        70        

          40        50        60        70        80        90     
pF1KB9 MEVKPKDIIHVVKDQLIGQGIIVKDARLNGSVASYILASHNGISYKDLDVIFGVELPGNE
       . :.:..:..::.. :  ::. :...::.::.::..:  ..:..:::::..: :.: .. 
CCDS29 LSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESGLGYKDLDLVFRVDLRSEA
       80        90       100       110       120       130        

         100       110       120       130       140       150     
pF1KB9 EFQVVKDAVLDCLLDFLPKDVKKEKLSPDIMKDAYVQKLVKVCNGHDCWSLISLSNNTGK
        ::..: .:: :::::::  :.. :..:  .:.::::::::::.  : ::::::::..::
CCDS29 SFQLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVKVCTDSDRWSLISLSNKSGK
      140       150       160       170       180       190        

         160       170       180       190       200       210     
pF1KB9 NLELKFVSSLRRQFEFSVDSFQIVLDPMLEFYSDKNAKLTKESYPVVVAESMYGDFQEAM
       :.:::::.:.:::::::.:::::.:: .: : . ... ...  .:.:..::.:::: ::.
CCDS29 NVELKFVDSVRRQFEFSIDSFQIILDSLLLFGQCSSTPMSEAFHPTVTGESLYGDFTEAL
      200       210       220       230       240       250        

         220       230       240       250       260       270     
pF1KB9 THLQHKLICTRKPEEIRGGGLLKYCSLLVHGFKPACMSEIKNLERYMCSRFFIDFPHIEE
        ::.:..: ::.::::::::::::: :::.::.:   .... :.:::::::::::: . :
CCDS29 EHLRHRVIATRSPEEIRGGGLLKYCHLLVRGFRPRPSTDVRALQRYMCSRFFIDFPDLVE
      260       270       280       290       300       310        

         280       290        300       310       320       330    
pF1KB9 QQKKIESYLHNHFIG-EGMTKYDYLMTLHGVVNESTVCLMSYERRQILHLITMMALKVLG
       :.. .: ::. :: : ..  .:  :.::: ::::::::::..:::: : ::. .::..:.
CCDS29 QRRTLERYLEAHFGGADAARRYACLVTLHRVVNESTVCLMNHERRQTLDLIAALALQALA
      320       330       340       350       360       370        

          340       350       360       370       380         
pF1KB9 ELNILPNTQKVTCFYQPAPYFAAEARYPIYVIPEPPPVSFQPYHPLHFRGSNGMS
       : .  : .  .  .  :.   .. :    :: :  :                   
CCDS29 EQG--PAATAALAWRPPGTDGVVPATVNYYVTPVQPLLAHAYPTWLPCN      
      380         390       400       410       420           




389 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:48:10 2016 done: Fri Nov  4 19:48:10 2016
 Total Scan time:  2.750 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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