Result of FASTA (ccds) for pF1KB9822
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9822, 312 aa
  1>>>pF1KB9822 312 - 312 aa - 312 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2390+/-0.000734; mu= 13.4843+/- 0.044
 mean_var=122.0526+/-24.920, 0's: 0 Z-trim(113.2): 13  B-trim: 0 in 0/51
 Lambda= 0.116092
 statistics sampled from 13894 (13904) to 13894 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.427), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS5499.1 PURB gene_id:5814|Hs108|chr7            ( 312) 2117 364.9 4.4e-101
CCDS4220.1 PURA gene_id:5813|Hs108|chr5            ( 322)  753 136.5 2.7e-32
CCDS6081.1 PURG gene_id:29942|Hs108|chr8           ( 347)  469 89.0 5.8e-18
CCDS34878.1 PURG gene_id:29942|Hs108|chr8          ( 322)  349 68.8 6.2e-12


>>CCDS5499.1 PURB gene_id:5814|Hs108|chr7                 (312 aa)
 initn: 2117 init1: 2117 opt: 2117  Z-score: 1928.2  bits: 364.9 E(32554): 4.4e-101
Smith-Waterman score: 2117; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312)

               10        20        30        40        50        60
pF1KB9 MADGDSGSERGGGGGPCGFQPASRGGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MADGDSGSERGGGGGPCGFQPASRGGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IAEVGAGGSKSRLTLSMAVAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IAEVGAGGSKSRLTLSMAVAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SEFLVRENRKYYLDLKENQRGRFLRIRQTVNRGGGGFGAGPGPGGLQSGQTIALPAQGLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SEFLVRENRKYYLDLKENQRGRFLRIRQTVNRGGGGFGAGPGPGGLQSGQTIALPAQGLI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EFRDALAKLIDDYGGEDDELAGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFDVGCNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EFRDALAKLIDDYGGEDDELAGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFDVGCNK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 YGVFLRVSEVKPSYRNAITVPFKAWGKFGGAFCRYADEMKEIQERQRDKLYERRGGGSGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YGVFLRVSEVKPSYRNAITVPFKAWGKFGGAFCRYADEMKEIQERQRDKLYERRGGGSGG
              250       260       270       280       290       300

              310  
pF1KB9 GEESEGEEVDED
       ::::::::::::
CCDS54 GEESEGEEVDED
              310  

>>CCDS4220.1 PURA gene_id:5813|Hs108|chr5                 (322 aa)
 initn: 1048 init1: 498 opt: 753  Z-score: 693.4  bits: 136.5 E(32554): 2.7e-32
Smith-Waterman score: 1270; 71.7% identity (83.6% similar) in 286 aa overlap (4-289:31-288)

                                          10        20        30   
pF1KB9                            MADGDSGSERGGGGGPCGFQPASRGGGEQETQE
                                     : .:.  :::::  :   .. :: ..::::
CCDS42 MADRDSGSEQGGAALGSGGSLGHPGSGSGSGGGGGGGGGGGGSGGGGGGAPGGLQHETQE
               10        20        30        40        50        60

            40        50        60        70        80        90   
pF1KB9 LASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGSKSRLTLSMAVAAEFRDSLGDFIEH
       :::::.:::::::::::::::::::::::::::::.::::::::.::.:::: :::::::
CCDS42 LASKRVDIQNKRFYLDVKQNAKGRFLKIAEVGAGGNKSRLTLSMSVAVEFRDYLGDFIEH
               70        80        90       100       110       120

           100       110       120       130       140       150   
pF1KB9 YAQLGPSSPEQLAAGAEEGGGPRRALKSEFLVRENRKYYLDLKENQRGRFLRIRQTVNRG
       :::::::.: .:: . .:   ::::::::::::::::::.::::::::::::::::::::
CCDS42 YAQLGPSQPPDLAQAQDE---PRRALKSEFLVRENRKYYMDLKENQRGRFLRIRQTVNRG
              130          140       150       160       170       

           160       170       180       190       200       210   
pF1KB9 GGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAGGPGG
              :: :. : :::::::::::::::::::::::::: :..     :.        
CCDS42 -------PGLGSTQ-GQTIALPAQGLIEFRDALAKLIDDYGVEEE-----PA--------
              180        190       200       210                   

           220       230       240       250       260       270   
pF1KB9 GLYGELPEGTSITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRNAITVPFKAWGKFGGAFC
           :::::::.:::.:::::::: ::::::.:::::::.:::.::::.:.:.::: .::
CCDS42 ----ELPEGTSLTVDNKRFFFDVGSNKYGVFMRVSEVKPTYRNSITVPYKVWAKFGHTFC
            220       230       240       250       260       270  

           280       290       300       310             
pF1KB9 RYADEMKEIQERQRDKLYERRGGGSGGGEESEGEEVDED           
       .:..:::.:::.::.:                                  
CCDS42 KYSEEMKKIQEKQREKRAACEQLHQQQQQQQEETAAATLLLQGEEEGEED
            280       290       300       310       320  

>>CCDS6081.1 PURG gene_id:29942|Hs108|chr8                (347 aa)
 initn: 1024 init1: 338 opt: 469  Z-score: 435.9  bits: 89.0 E(32554): 5.8e-18
Smith-Waterman score: 944; 53.7% identity (71.8% similar) in 309 aa overlap (23-305:49-344)

                       10        20        30        40        50  
pF1KB9         MADGDSGSERGGGGGPCGFQPASRGGGEQETQELASKRLDIQNKRFYLDVKQ
                                     ...::  : :::::::.:::.:::::::::
CCDS60 NVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQELASKRVDIQKKRFYLDVKQ
       20        30        40        50        60        70        

             60              70        80        90       100      
pF1KB9 NAKGRFLKIAEVGAGGS------KSRLTLSMAVAAEFRDSLGDFIEHYAQLGPSSPEQLA
       ...:::::::::  : .      ::.::::..::::..: :::::::::.:: .. .:  
CCDS60 SSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKDCLGDFIEHYAHLGLKGHRQEH
       80        90       100       110       120       130        

        110                           120       130       140      
pF1KB9 AGAEEGGGPRR--------------------ALKSEFLVRENRKYYLDLKENQRGRFLRI
       . ..: :. ::                    .::.... :.:::::::::::::::::::
CCDS60 GHSKEQGSRRRQKHSAPSPPVSVGSEEHPHSVLKTDYIERDNRKYYLDLKENQRGRFLRI
      140       150       160       170       180       190        

        150       160       170       180       190       200      
pF1KB9 RQTVNRGGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGG
       :::. :: : .:      : .  :::.:::::.:::::::..::.:::  : :   :   
CCDS60 RQTMMRGTGMIGYFGHSLGQE--QTIVLPAQGMIEFRDALVQLIEDYGEGDIEERRG---
      200       210         220       230       240       250      

        210       220       230       240       250       260      
pF1KB9 GAGGPGGGLYGELPEGTSITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRNAITVPFKAWG
       :   :      :::::::. ::.:::.:::: ::::.::.::::.: :::.:::::::: 
CCDS60 GDDDP-----LELPEGTSFRVDNKRFYFDVGSNKYGIFLKVSEVRPPYRNTITVPFKAWT
                260       270       280       290       300        

        270       280       290       300       310  
pF1KB9 KFGGAFCRYADEMKEIQERQRDKLYERRGGGSGGGEESEGEEVDED
       .::  : .: .::..: . ...:   :  : ...:::.:       
CCDS60 RFGENFIKYEEEMRKICNSHKEK---RMDGRKASGEEQECLD    
      310       320       330          340           

>>CCDS34878.1 PURG gene_id:29942|Hs108|chr8               (322 aa)
 initn: 855 init1: 205 opt: 349  Z-score: 327.7  bits: 68.8 E(32554): 6.2e-12
Smith-Waterman score: 761; 53.1% identity (70.4% similar) in 260 aa overlap (23-256:49-298)

                       10        20        30        40        50  
pF1KB9         MADGDSGSERGGGGGPCGFQPASRGGGEQETQELASKRLDIQNKRFYLDVKQ
                                     ...::  : :::::::.:::.:::::::::
CCDS34 NVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQELASKRVDIQKKRFYLDVKQ
       20        30        40        50        60        70        

             60              70        80        90       100      
pF1KB9 NAKGRFLKIAEVGAGGS------KSRLTLSMAVAAEFRDSLGDFIEHYAQLGPSSPEQLA
       ...:::::::::  : .      ::.::::..::::..: :::::::::.:: .. .:  
CCDS34 SSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKDCLGDFIEHYAHLGLKGHRQEH
       80        90       100       110       120       130        

        110                           120       130       140      
pF1KB9 AGAEEGGGPRR--------------------ALKSEFLVRENRKYYLDLKENQRGRFLRI
       . ..: :. ::                    .::.... :.:::::::::::::::::::
CCDS34 GHSKEQGSRRRQKHSAPSPPVSVGSEEHPHSVLKTDYIERDNRKYYLDLKENQRGRFLRI
      140       150       160       170       180       190        

        150       160       170       180       190       200      
pF1KB9 RQTVNRGGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGG
       :::. :: : .:      : .  :::.:::::.:::::::..::.:::  : :      :
CCDS34 RQTMMRGTGMIGYFGHSLGQE--QTIVLPAQGMIEFRDALVQLIEDYGEGDIEER---RG
      200       210         220       230       240       250      

        210       220       230       240       250       260      
pF1KB9 GAGGPGGGLYGELPEGTSITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRNAITVPFKAWG
       :   :      :::::::. ::.:::.:::: ::::.::....   : .:          
CCDS34 GDDDPL-----ELPEGTSFRVDNKRFYFDVGSNKYGIFLKLTNYPKSRENINLFHCCQIK
                260       270       280       290       300        

        270       280       290       300       310  
pF1KB9 KFGGAFCRYADEMKEIQERQRDKLYERRGGGSGGGEESEGEEVDED
                                                     
CCDS34 HKEQPHDTTKTVEE                                
      310       320                                  




312 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:28:04 2016 done: Fri Nov  4 19:28:04 2016
 Total Scan time:  2.660 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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