GENSCAN 1.0	Date run:  4-Nov-116	Time: 19:26:50

Sequence gi568815590r:126456460_126657389 : 200930 bp : 42.34% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   5355   5575  221  2  2   75   64   147 0.806   9.24
 1.02 Term +   7137   7248  112  0  1   70   44   115 0.990   2.35
 1.03 PlyA +   8548   8553    6                               1.05

 2.03 PlyA -  11013  11008    6                               1.05
 2.02 Term -  16279  16154  126  1  0   90   39   152 0.959   7.80
 2.01 Init -  23601  23599    3  0  0  108   81     0 0.318   1.35
 2.00 Prom -  26671  26632   40                              -2.95

 3.07 PlyA -  27302  27297    6                               1.05
 3.06 Term -  30827  30421  407  0  2    1   42   252 0.156   6.26
 3.05 Intr -  35053  34929  125  0  2   41   51    98 0.005   0.71
 3.04 Intr -  48261  48157  105  2  0  104   93     2 0.101   0.71
 3.03 Intr -  48907  48682  226  2  1   73   98    86 0.276   4.22
 3.02 Intr -  59373  59176  198  1  0   95   66   122 0.862   9.10
 3.01 Init -  62377  62323   55  1  1   77   95    54 0.932   6.50
 3.00 Prom -  66646  66607   40                              -7.35

 4.00 Prom +  67528  67567   40                              -5.55
 4.01 Init +  76832  76988  157  1  1   78   94    69 0.842   6.62
 4.02 Intr +  80568  80659   92  1  2   55  103    33 0.650   0.29
 4.03 Intr +  83882  83911   30  1  0  115   87    48 0.485   4.81
 4.04 Term +  91058  91156   99  1  0  113   48    29 0.163  -1.45
 4.05 PlyA +  94926  94931    6                               1.05

 5.05 PlyA -  96006  96001    6                               1.05
 5.04 Term - 100934  99998  937  1  1   43   45  1326 0.008 114.39
 5.03 Intr - 101698 101575  124  2  1   50  100    28 0.007  -1.08
 5.02 Intr - 102449 102311  139  2  1   47   78   111 0.001   5.12
 5.01 Init - 115841 115770   72  2  0   64  113    44 0.344   5.62
 5.00 Prom - 120724 120685   40                              -7.95

 6.02 PlyA - 122118 122113    6                               1.05
 6.01 Sngl - 125009 124788  222  2  0   75   49   202 0.772   9.90
 6.00 Prom - 125801 125762   40                              -6.85

 7.03 PlyA - 125809 125804    6                              -0.45
 7.02 Term - 126573 126362  212  1  2   46   42   184 0.340   6.07
 7.01 Init - 139840 139765   76  1  1   80   84    60 0.334   6.10
 7.00 Prom - 158587 158548   40                              -3.15

 8.00 Prom + 162657 162696   40                              -4.65
 8.01 Init + 162866 162977  112  1  1   25   65    80 0.050  -0.16
 8.02 Intr + 174610 174895  286  2  1  102   28   171 0.222   7.98
 8.03 Intr + 178530 178829  300  0  0   37   53   173 0.281   3.62
 8.04 Term + 179388 179556  169  0  1   15   41   140 0.230  -1.63
 8.05 PlyA + 180428 180433    6                               1.05

 9.04 PlyA - 182760 182755    6                               1.05
 9.03 Term - 191160 190928  233  1  2   67   36   131 0.460   1.45
 9.02 Intr - 196355 196217  139  2  1   14   61   123 0.399   1.32
 9.01 Intr - 200296 200193  104  2  2  110   97    36 0.674   5.67

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl - 100930  99998  933  1  0   76   45  1321 0.950 122.80
S.002 Term + 102306 102516  211  0  1   89   42   137 0.895   4.98


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590r:126456460_126657389|GENSCAN_predicted_peptide_1|110_aa
MAALPEVIYRFNAIPIKLPLAFFTELEKTILNFIWNQEKARIAKTILGKKNKAGGIMLPD
FKLYYKATVTKTTCILKEALVTGKLHVGSNEVMHIVVSIRLSPHGEVFRC

>gi568815590r:126456460_126657389|GENSCAN_predicted_CDS_1|333_bp
atggccgcactgcctgaagtaatttataggttcaatgccatccccatcaagctaccactg
gctttcttcacagaattggaaaaaactattttaaacttcatatggaaccaagaaaaagcc
cgcatagccaagacaatcctgggcaagaagaataaagctggaggcatcatgctacctgac
ttcaaactgtactacaaggctacagtaaccaaaacaacatgcatcctcaaagaagctctg
gtaacagggaagctgcatgtaggatctaatgaagttatgcacattgtggtgtccataagg
cttagccctcatggagaagtcttcagatgttga

>gi568815590r:126456460_126657389|GENSCAN_predicted_peptide_2|42_aa
MSEWSPISTKRTGLSNFKSSGSKVSESTGDDNNNDDDDDVKQ

>gi568815590r:126456460_126657389|GENSCAN_predicted_CDS_2|129_bp
atgagtgaatggtctcctatatccactaaacggactggattatctaatttcaaaagcagt
ggttccaaagtttcagagtcaaccggggatgataataataatgatgatgatgatgatgtg
aagcaatag

>gi568815590r:126456460_126657389|GENSCAN_predicted_peptide_3|371_aa
MEADAGCDALLTVESLPNACFHRLTSTPFDSCTFNNQSDGVIYTVNLQPVLEKGSKKEAP
LVPTMPQKKQVKDNRLWSGAPRIGVSRDTQTWEYFEVQEPSRTPRLFPSFERGGNQTLEE
WSNVIKATEPLRCGAKTSSHSLVLFPPLPCCHSTYAGGKSFTPCRLLLPHGGPQLFCVLK
GTFLSSQLTFHVITSFWCMLAGFGITWMLESHPTDSEPSWICLVSGNVFCLVAESTDHTS
SPAMDSNQDEISELPEKEFQSIVKLIKKEPEKSNVQLKEIKNVIQDMKRKFFSEIGSIHK
KQSQLLEIKDTLRETQNALESLSNRIKQAEERTLELKDKAFDLTQSTKDKRILKNEQNLQ
EVWGYAECPNL

>gi568815590r:126456460_126657389|GENSCAN_predicted_CDS_3|1116_bp
atggaggcagatgctggctgtgatgctctcttgactgttgaaagccttccaaatgcatgt
tttcacagactaacttctacaccttttgattcttgcacttttaataatcagtcggatgga
gtaatttatacagttaacttacagccagtgttggaaaaagggtcaaagaaagaggcccct
ttggtgccaaccatgccacagaagaagcaagtaaaagataacaggttgtggagcggggca
cctagaataggtgtctccagagatacacagacttgggaatactttgaggtgcaggagcct
tctagaacacccaggttatttccatcatttgagagaggagggaaccaaaccctggaggag
tggagcaatgtgatcaaggccacagagccactcagatgcggagctaagaccagcagccac
agccttgtcctcttcccaccccttccctgttgccattccacatatgctggaggaaaaagt
ttcactccttgcaggcttctgcttccacatggtggaccccagttgttttgtgttcttaag
ggcacctttttgtcatcacagctgacgtttcatgtgatcaccagcttttggtgcatgctg
gcaggctttggcattacttggatgctggaatcacaccccacagactcagagccctcctgg
atctgccttgtatctgggaatgtcttctgtttggttgctgaaagcactgatcacactagc
tcaccagcaatggattcaaaccaagacgaaatctctgaattgccagaaaaagaatttcag
tcgattgttaagctaatcaagaaggaaccagagaaaagtaatgttcaacttaaagaaatc
aaaaacgtgatacaggatatgaaaagaaaattcttcagtgaaataggtagcatacataaa
aaacaatcacaacttctggaaatcaaggacacacttagagaaacacaaaatgcactggaa
agtctcagcaatagaattaaacaagcagaagaaagaacattagagctcaaagacaaggct
ttcgatttaacccaatccaccaaagacaaaagaattttaaaaaatgaacaaaacctccaa
gaagtttggggctatgctgaatgtccaaacctatga

>gi568815590r:126456460_126657389|GENSCAN_predicted_peptide_4|125_aa
MEVLEKQSIQSISVAKLSHMIPCNHHKHLIKKMLLQAHFSDEETASSKVRMAIPTSFLVL
EHTTFIFLVLFLPELHLPTPSRHPCEEVPSAMIGCFNKSGSINAIQIMRHATCWSRRGFR
VLSMG

>gi568815590r:126456460_126657389|GENSCAN_predicted_CDS_4|378_bp
atggaagttttggagaaacaaagcattcagtccatctcagtggctaaactctctcacatg
attccatgtaatcatcacaaacatttaattaagaagatgttacttcaggcccacttttca
gatgaggaaactgcatcttcaaaagttagaatggctatacccacttcatttctggtcctc
gaacacaccaccttcatcttcttggtgctctttctcccagaacttcaccttcctacccct
tctcgtcatccctgtgaagaggtgccttctgccatgattggttgcttcaataaaagtgga
agcataaatgctattcagataatgcgtcatgccacttgttggagcagaagagggttccga
gtactctccatggggtga

>gi568815590r:126456460_126657389|GENSCAN_predicted_peptide_5|423_aa
MAMQDARSPSKNVIIFILLQKLRKFPTTNSENTSRMTHSSSCPGEESFLVTFRARNMFQE
RKETTVPPSPASLPPAPGEEGLPSLHLQTRPRSLGARQGALPQAPRPSPLRGVMGNQVEK
LTHLSYKEVPTADPTGVDRDDGPRIGVSYIFSNDDEDVEPQPPPQGPDGGGLPDGGDGPP
PPQPQPYDPRLHEVECSVFYRDECIYQKSFAPGSAALSTYTPENLLNKCKPGDLVEFVSQ
AQYPHWAVYVGNFQVVHLHRLEVINSFLTDASQGRRGRVVNDLYRYKPLSSSAVVRNALA
HVGAKERELSWRNSESFAAWCRYGKREFKIGGELRIGKQPYRLQIQLSAQRSHTLEFQSL
EDLIMEKRRNDQIGRAAVLQELATHLHPAEPEEGDSNVARTTPPPGRPPAPSSEEEDGEA
VAH

>gi568815590r:126456460_126657389|GENSCAN_predicted_CDS_5|1272_bp
atggcaatgcaagatgcccgatcaccaagcaaaaatgtaattattttcattctgctccag
aaacttagaaagtttcccactactaactctgaaaacacctctaggatgacgcactcttcg
agctgtcctggtgaagaatcctttcttgtgacctttagggcaagaaatatgttccaggaa
agaaaagaaacgactgttcctccttctccagcctcgctgccgcccgcgccgggagaggag
ggactgccgagcctacaccttcaaactcgccctagaagtctcggggcgcggcagggagcc
cttccccaggccccacggccttcacctctccgcggcgtgatgggcaaccaggtggagaaa
ttgacccacctaagttacaaggaagttcccacggccgacccgactggcgtggaccgggac
gacgggccccgcattggggtctcctacattttctccaatgacgatgaggacgtggagccg
cagccgccgcctcaggggccagatggcggcggcttgcccgacggtggggacgggccgccg
ccgccccagccgcagccctacgatccgcggctgcacgaggtggaatgctccgtgttctac
cgggacgaatgcatctaccagaagagcttcgcgccgggctcggcggcgctgagtacctac
acgcccgagaacctgctcaacaagtgcaagccgggcgatctggtggagttcgtgtcgcag
gctcagtacccgcactgggccgtatatgtgggtaacttccaggtggtgcacctgcaccgg
ctggaggtgattaacagcttcctgactgacgccagccagggccgtcgcggccgcgtggtc
aacgatctgtaccgctacaagccgctaagctccagcgccgtggtgcgcaacgcgctggcg
cacgtgggtgccaaggagcgcgagctgagctggcgcaactcggagagtttcgccgcctgg
tgccgctacggcaagcgcgagttcaagatcggcggcgagctgcgcatcggcaagcagccc
taccggctgcagattcagctgtcggcgcagcgcagccacacgctcgagttccagagtcta
gaggacctgatcatggagaagcgacgcaacgaccagatcgggcgcgcggccgtgctgcag
gagctcgccacgcacctgcacccggcggagccggaggagggcgacagcaacgtggcgcgg
actacgccgcctcccgggcgcccccctgcgcccagctccgaggaggaggacggagaggca
gtggcacactga

>gi568815590r:126456460_126657389|GENSCAN_predicted_peptide_6|73_aa
MQEQWLAFSPNGSGNGHLAGSETQWTPCQIRRGGSQQRVCDGGKQQWWTESKSSAQAITN
RDQKSVQLQDLIE

>gi568815590r:126456460_126657389|GENSCAN_predicted_CDS_6|222_bp
atgcaggaacaatggctagcctttagcccaaacgggagtggcaatgggcacctcgctgga
tcagaaacacagtggacaccctgccagatccggaggggtggaagtcagcagcgggtctgt
gacggtggcaaacagcagtggtggacagagagcaaaagctcagctcaagccataacaaac
cgggaccagaagagtgtgcagttgcaagatttaattgagtga

>gi568815590r:126456460_126657389|GENSCAN_predicted_peptide_7|95_aa
MRTSIQPHGEAHMKRNEVYHQKPAPSGIGRSTAKMPGPPGSLEMEPSTFMDIEFSLEEWQ
YLDTAQRNLYGNATLMDYRNLVFLGIAVSKPDLIT

>gi568815590r:126456460_126657389|GENSCAN_predicted_CDS_7|288_bp
atgaggacatccattcagccccatggagaggcccacatgaagagaaatgaagtctaccac
caaaaaccagcaccatcaggtattgggagatccacagctaagatgccaggaccccctgga
agcctagaaatggaaccatcgacatttatggacatagaattttctctggaggagtggcaa
tacctggacactgcacagcggaatttatacggaaatgcgacgttaatggactacagaaac
ctggtcttcctgggtattgctgtctctaagccagacctgatcacttga

>gi568815590r:126456460_126657389|GENSCAN_predicted_peptide_8|288_aa
MAELSRPKDFAFPHIPLDLLTPANCDDVLRASSVALGETITERRKQGTKPCPCDITVHDP
RNWKPLKAKEYARISIQWFFNKKRNLAEQEFQLTTWLFRWRVCLRLFECGTKGAQRSHPS
FPETVPPYLIIDWVVSVTSTSFISHELEALSLRPPPTWPLSFWDSPQSSWHIPLVIPAAQ
LHCGSGQESSVCKLGPSLRAGQHSSGRGTLASQPSRARASVQLRDGAKADWSGTPYHAFK
QVLHLAQRPRKGSSPLRLEKKATAKKQAININVPGKEEERKDTGAQEE

>gi568815590r:126456460_126657389|GENSCAN_predicted_CDS_8|867_bp
atggcagaactgtctagacccaaagattttgcttttcctcatattccgctcgaccttctg
acccctgcaaactgtgatgatgtgttgagggcatcatcagtggctttgggagaaacaata
acagagagaaggaagcagggaacaaagccatgcccgtgtgacatcactgtgcatgatcct
agaaactggaaacctcttaaagccaaagagtatgcacggatatctattcagtggttcttt
aacaagaagagaaacctggcagaacaggagtttcaactcaccacgtggcttttcaggtgg
agggtctgtttgcgattatttgagtgtggaacaaagggtgcacagagaagtcaccccagt
tttcctgaaactgtgcctccttacctcattattgactgggtggtgtctgtcacttccaca
tcatttatctcccatgaacttgaagctctgtccctccgccctcctccaacatggccactg
tcattttgggattcaccccagtcttcctggcacatccctctggtgattcctgccgcgcag
ctgcactgtggctcagggcaggagagcagcgtgtgcaaactggggccatctctgagggct
ggccagcacagttctggccgtgggactctggcttcacagccctctcgtgccagagcttct
gtgcagctcagagatggtgccaaggcagactggagtggcacgccttaccacgccttcaaa
caagtgctccatctggcacaaagaccaagaaaaggttccagtcccttgaggttggagaag
aaagcaacggcaaagaaacaagctattaatattaatgttccaggaaaagaagaagagaga
aaggacacgggcgcccaggaagaatga

>gi568815590r:126456460_126657389|GENSCAN_predicted_peptide_9|158_aa
XLMKKERDRERKREKKLDHKAWSEWVLKREGLNSKQAYPFHAAKGKGVCGGKRKKENVSF
HLASELAAQQENKASANKEDENVRPPSWGEHSGLQQPDSLLMKMQVLVIRNLAIVHGNVG
SDRMQAEHQHPMPLPSWFWLDFESDPEMVPLDLEFLFG

>gi568815590r:126456460_126657389|GENSCAN_predicted_CDS_9|477_bp
nctctgatgaagaaagagagagacagagagagaaaaagagagaaaaaacttgatcacaag
gcttggagtgaatgggtgttgaagagagaagggcttaatagtaagcaagcatatcctttt
catgcagccaagggcaagggtgtctgtgggggcaagagaaagaaggaaaatgtgagtttc
cacttagccagtgagttagcggctcagcaagagaacaaagctagtgcaaacaaagaagac
gagaatgtcaggcccccatcatggggtgagcacagtgggctccagcagcctgacagtctc
ctcatgaagatgcaggtactggtcatcagaaatttggccattgtgcatggaaatgttggt
tctgacagaatgcaggcagagcatcagcatcccatgccactcccatcttggttctggctt
gactttgaaagtgatcctgaaatggttccattggatctggaattcctttttggataa