Result of FASTA (omim) for pF1KB9815
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9815, 299 aa
  1>>>pF1KB9815 299 - 299 aa - 299 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6692+/-0.000292; mu= 7.6257+/- 0.018
 mean_var=182.9278+/-36.471, 0's: 0 Z-trim(123.9): 7  B-trim: 36 in 1/61
 Lambda= 0.094828
 statistics sampled from 44657 (44664) to 44657 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.524), width:  16
 Scan time:  8.670

The best scores are:                                      opt bits E(85289)
NP_006233 (OMIM: 603326) protein phosphatase 1 reg ( 299) 2110 299.9 4.1e-81
NP_001188258 (OMIM: 610541) protein phosphatase 1  ( 285)  346 58.5 1.8e-08
XP_016869324 (OMIM: 610541) PREDICTED: protein pho ( 285)  346 58.5 1.8e-08
XP_006716316 (OMIM: 610541) PREDICTED: protein pho ( 285)  346 58.5 1.8e-08
NP_078883 (OMIM: 610541) protein phosphatase 1 reg ( 285)  346 58.5 1.8e-08
NP_005389 (OMIM: 602999) protein phosphatase 1 reg ( 317)  340 57.7 3.4e-08
NP_002702 (OMIM: 125853,600917,604367) protein pho (1122)  259 47.1 0.00018


>>NP_006233 (OMIM: 603326) protein phosphatase 1 regulat  (299 aa)
 initn: 2110 init1: 2110 opt: 2110  Z-score: 1577.1  bits: 299.9 E(85289): 4.1e-81
Smith-Waterman score: 2110; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KB9 MSRGPSSAVLPSALGSRKLGPRSLSCLSDLDGGVALEPRACRPPGSPGRAPPPTPAPSGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MSRGPSSAVLPSALGSRKLGPRSLSCLSDLDGGVALEPRACRPPGSPGRAPPPTPAPSGC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 DPRLRPIILRRARSLPSSPERRQKAAGAPGAACRPGCSQKLRVRFADALGLELAQVKVFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DPRLRPIILRRARSLPSSPERRQKAAGAPGAACRPGCSQKLRVRFADALGLELAQVKVFN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 AGDDPSVPLHVLSRLAINSDLCCSSQDLEFTLHCLVPDFPPPVEAADFGERLQRQLVCLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AGDDPSVPLHVLSRLAINSDLCCSSQDLEFTLHCLVPDFPPPVEAADFGERLQRQLVCLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 RVTCSDLGISGTVRVCNVAFEKQVAVRYTFSGWRSTHEAVARWRGPAGPEGTEDVFTFGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RVTCSDLGISGTVRVCNVAFEKQVAVRYTFSGWRSTHEAVARWRGPAGPEGTEDVFTFGF
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KB9 PVPPFLLELGSRVHFAVRYQVAGAEYWDNNDHRDYSLTCRNHALHMPRGECEESWIHFI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PVPPFLLELGSRVHFAVRYQVAGAEYWDNNDHRDYSLTCRNHALHMPRGECEESWIHFI
              250       260       270       280       290         

>>NP_001188258 (OMIM: 610541) protein phosphatase 1 regu  (285 aa)
 initn: 314 init1: 167 opt: 346  Z-score: 273.2  bits: 58.5 E(85289): 1.8e-08
Smith-Waterman score: 346; 34.1% identity (60.7% similar) in 211 aa overlap (76-277:30-232)

          50        60        70        80               90        
pF1KB9 SPGRAPPPTPAPSGCDPRLRPIILRRARSLPSSPER-------RQKAAGAPGAACRPGCS
                                     ::.: :       ...:.:  . : .    
NP_001  MMAVDIEYRYNCMAPSLRQERFAFKISPKPSKPLRPCIQLSSKNEASGMVAPAVQEKKV
                10        20        30        40        50         

      100       110       120        130       140       150       
pF1KB9 QKLRVRFADALGLELAQVKVFNAGDDP-SVPLHVLSRLAINSDLCCSSQDLEFTLHCLVP
       .: :: :::  :: :..::::.  ::: ..:... ..:  :     ....  :.:     
NP_001 KK-RVSFADNQGLALTMVKVFSEFDDPLDMPFNI-TELLDNIVSLTTAESESFVL-----
      60         70        80        90        100       110       

       160        170       180       190       200       210      
pF1KB9 DFPPP-VEAADFGERLQRQLVCLERVTCSDLGISGTVRVCNVAFEKQVAVRYTFSGWRST
       ::  : ..  :: .::: . ::::  . .: .:.:::.: :.:::: : .:.::. :.: 
NP_001 DFSQPSADYLDFRNRLQADHVCLENCVLKDKAIAGTVKVQNLAFEKTVKIRMTFDTWKSY
            120       130       140       150       160       170  

        220       230       240       250       260       270      
pF1KB9 HEAVARWRGPAGPEGTEDVFTFGFPVPPFLLELGSRVHFAVRYQVAGAEYWDNNDHRDYS
        .   ..   .   . .:.:.: . .:   ..   :..::: :.  :  :::.:  ..: 
NP_001 TDFPCQYVKDTYAGSDRDTFSFDISLPE-KIQSYERMEFAVYYECNGQTYWDSNRGKNYR
            180       190       200        210       220       230 

        280       290                                        
pF1KB9 LTCRNHALHMPRGECEESWIHFI                               
       .                                                     
NP_001 IIRAELKSTQGMTKPHSGPDLGISFDQFGSPRCSYGLFPEWPSYLGYEKLGPYY
             240       250       260       270       280     

>>XP_016869324 (OMIM: 610541) PREDICTED: protein phospha  (285 aa)
 initn: 314 init1: 167 opt: 346  Z-score: 273.2  bits: 58.5 E(85289): 1.8e-08
Smith-Waterman score: 346; 34.1% identity (60.7% similar) in 211 aa overlap (76-277:30-232)

          50        60        70        80               90        
pF1KB9 SPGRAPPPTPAPSGCDPRLRPIILRRARSLPSSPER-------RQKAAGAPGAACRPGCS
                                     ::.: :       ...:.:  . : .    
XP_016  MMAVDIEYRYNCMAPSLRQERFAFKISPKPSKPLRPCIQLSSKNEASGMVAPAVQEKKV
                10        20        30        40        50         

      100       110       120        130       140       150       
pF1KB9 QKLRVRFADALGLELAQVKVFNAGDDP-SVPLHVLSRLAINSDLCCSSQDLEFTLHCLVP
       .: :: :::  :: :..::::.  ::: ..:... ..:  :     ....  :.:     
XP_016 KK-RVSFADNQGLALTMVKVFSEFDDPLDMPFNI-TELLDNIVSLTTAESESFVL-----
      60         70        80        90        100       110       

       160        170       180       190       200       210      
pF1KB9 DFPPP-VEAADFGERLQRQLVCLERVTCSDLGISGTVRVCNVAFEKQVAVRYTFSGWRST
       ::  : ..  :: .::: . ::::  . .: .:.:::.: :.:::: : .:.::. :.: 
XP_016 DFSQPSADYLDFRNRLQADHVCLENCVLKDKAIAGTVKVQNLAFEKTVKIRMTFDTWKSY
            120       130       140       150       160       170  

        220       230       240       250       260       270      
pF1KB9 HEAVARWRGPAGPEGTEDVFTFGFPVPPFLLELGSRVHFAVRYQVAGAEYWDNNDHRDYS
        .   ..   .   . .:.:.: . .:   ..   :..::: :.  :  :::.:  ..: 
XP_016 TDFPCQYVKDTYAGSDRDTFSFDISLPE-KIQSYERMEFAVYYECNGQTYWDSNRGKNYR
            180       190       200        210       220       230 

        280       290                                        
pF1KB9 LTCRNHALHMPRGECEESWIHFI                               
       .                                                     
XP_016 IIRAELKSTQGMTKPHSGPDLGISFDQFGSPRCSYGLFPEWPSYLGYEKLGPYY
             240       250       260       270       280     

>>XP_006716316 (OMIM: 610541) PREDICTED: protein phospha  (285 aa)
 initn: 314 init1: 167 opt: 346  Z-score: 273.2  bits: 58.5 E(85289): 1.8e-08
Smith-Waterman score: 346; 34.1% identity (60.7% similar) in 211 aa overlap (76-277:30-232)

          50        60        70        80               90        
pF1KB9 SPGRAPPPTPAPSGCDPRLRPIILRRARSLPSSPER-------RQKAAGAPGAACRPGCS
                                     ::.: :       ...:.:  . : .    
XP_006  MMAVDIEYRYNCMAPSLRQERFAFKISPKPSKPLRPCIQLSSKNEASGMVAPAVQEKKV
                10        20        30        40        50         

      100       110       120        130       140       150       
pF1KB9 QKLRVRFADALGLELAQVKVFNAGDDP-SVPLHVLSRLAINSDLCCSSQDLEFTLHCLVP
       .: :: :::  :: :..::::.  ::: ..:... ..:  :     ....  :.:     
XP_006 KK-RVSFADNQGLALTMVKVFSEFDDPLDMPFNI-TELLDNIVSLTTAESESFVL-----
      60         70        80        90        100       110       

       160        170       180       190       200       210      
pF1KB9 DFPPP-VEAADFGERLQRQLVCLERVTCSDLGISGTVRVCNVAFEKQVAVRYTFSGWRST
       ::  : ..  :: .::: . ::::  . .: .:.:::.: :.:::: : .:.::. :.: 
XP_006 DFSQPSADYLDFRNRLQADHVCLENCVLKDKAIAGTVKVQNLAFEKTVKIRMTFDTWKSY
            120       130       140       150       160       170  

        220       230       240       250       260       270      
pF1KB9 HEAVARWRGPAGPEGTEDVFTFGFPVPPFLLELGSRVHFAVRYQVAGAEYWDNNDHRDYS
        .   ..   .   . .:.:.: . .:   ..   :..::: :.  :  :::.:  ..: 
XP_006 TDFPCQYVKDTYAGSDRDTFSFDISLPE-KIQSYERMEFAVYYECNGQTYWDSNRGKNYR
            180       190       200        210       220       230 

        280       290                                        
pF1KB9 LTCRNHALHMPRGECEESWIHFI                               
       .                                                     
XP_006 IIRAELKSTQGMTKPHSGPDLGISFDQFGSPRCSYGLFPEWPSYLGYEKLGPYY
             240       250       260       270       280     

>>NP_078883 (OMIM: 610541) protein phosphatase 1 regulat  (285 aa)
 initn: 314 init1: 167 opt: 346  Z-score: 273.2  bits: 58.5 E(85289): 1.8e-08
Smith-Waterman score: 346; 34.1% identity (60.7% similar) in 211 aa overlap (76-277:30-232)

          50        60        70        80               90        
pF1KB9 SPGRAPPPTPAPSGCDPRLRPIILRRARSLPSSPER-------RQKAAGAPGAACRPGCS
                                     ::.: :       ...:.:  . : .    
NP_078  MMAVDIEYRYNCMAPSLRQERFAFKISPKPSKPLRPCIQLSSKNEASGMVAPAVQEKKV
                10        20        30        40        50         

      100       110       120        130       140       150       
pF1KB9 QKLRVRFADALGLELAQVKVFNAGDDP-SVPLHVLSRLAINSDLCCSSQDLEFTLHCLVP
       .: :: :::  :: :..::::.  ::: ..:... ..:  :     ....  :.:     
NP_078 KK-RVSFADNQGLALTMVKVFSEFDDPLDMPFNI-TELLDNIVSLTTAESESFVL-----
      60         70        80        90        100       110       

       160        170       180       190       200       210      
pF1KB9 DFPPP-VEAADFGERLQRQLVCLERVTCSDLGISGTVRVCNVAFEKQVAVRYTFSGWRST
       ::  : ..  :: .::: . ::::  . .: .:.:::.: :.:::: : .:.::. :.: 
NP_078 DFSQPSADYLDFRNRLQADHVCLENCVLKDKAIAGTVKVQNLAFEKTVKIRMTFDTWKSY
            120       130       140       150       160       170  

        220       230       240       250       260       270      
pF1KB9 HEAVARWRGPAGPEGTEDVFTFGFPVPPFLLELGSRVHFAVRYQVAGAEYWDNNDHRDYS
        .   ..   .   . .:.:.: . .:   ..   :..::: :.  :  :::.:  ..: 
NP_078 TDFPCQYVKDTYAGSDRDTFSFDISLPE-KIQSYERMEFAVYYECNGQTYWDSNRGKNYR
            180       190       200        210       220       230 

        280       290                                        
pF1KB9 LTCRNHALHMPRGECEESWIHFI                               
       .                                                     
NP_078 IIRAELKSTQGMTKPHSGPDLGISFDQFGSPRCSYGLFPEWPSYLGYEKLGPYY
             240       250       260       270       280     

>>NP_005389 (OMIM: 602999) protein phosphatase 1 regulat  (317 aa)
 initn: 270 init1: 155 opt: 340  Z-score: 268.1  bits: 57.7 E(85289): 3.4e-08
Smith-Waterman score: 344; 29.8% identity (58.5% similar) in 275 aa overlap (19-289:10-265)

               10        20        30        40        50        60
pF1KB9 MSRGPSSAVLPSALGSRKLGPRSLSCLSDLDGGVALEPRACRPPGSPGRAPPPTPAPSGC
                         : :: :.  : .   ::.  : :      ...::     .  
NP_005          MSCTRMIQVLDPRPLTS-SVMPVDVAM--RLCL-----AHSPPVKSFLGPY
                        10         20          30             40   

               70        80        90       100       110          
pF1KB9 DPRLRPIILRRARSLPSSPERRQKAAGAPGAACRPGCSQKLRVRFADALGLELAQVKVF-
       :   :  .. . . : :  . ..:: .     :  . ..: :: :::. :: :. ..:: 
NP_005 DEFQRRHFVNKLKPLKSCLNIKHKAKSQNDWKCSHNQAKK-RVVFADSKGLSLTAIHVFS
            50        60        70        80         90       100  

     120       130       140       150       160        170        
pF1KB9 NAGDDPSVPLHVLSRLAINSDLCCSSQDLEFTLHCLVPDFPPP-VEAADFGERLQRQLVC
       .  ..:.  :. .. : .: :.  ::   .   . :. ::: : ..  .:  ..:...::
NP_005 DLPEEPAWDLQ-FDLLDLN-DI--SSALKHHEEKNLILDFPQPSTDYLSFRSHFQKNFVC
            110        120          130       140       150        

      180       190       200       210        220       230       
pF1KB9 LERVTCSDLGISGTVRVCNVAFEKQVAVRYTFSGWRS-THEAVARWRGPAGPEGTE-DVF
       ::  . ..  ..:::.: ::.:::.: .: ::..:.. :    .  ..  :  ::. :.:
NP_005 LENCSLQERTVTGTVKVKNVSFEKKVQIRITFDSWKNYTDVDCVYMKNVYG--GTDSDTF
      160       170       180       190       200         210      

        240       250       260       270       280       290      
pF1KB9 TFGFPVPPFLLELGSRVHFAVRYQVAGAEYWDNNDHRDYSLTCRNHALHMPRGECEESWI
       .:.. .:: ..   ....: . :.. :  .::::: ..: ..   :.   : :       
NP_005 SFAIDLPP-VIPTEQKIEFCISYHANGQVFWDNNDGQNYRIV---HVQWKPDGVQTQMAP
        220        230       240       250          260       270  

                                                    
pF1KB9 HFI                                          
                                                    
NP_005 QDCAFHQTSPKTELESTIFGSPRLASGLFPEWQSWGRMENLASYR
            280       290       300       310       

>>NP_002702 (OMIM: 125853,600917,604367) protein phospha  (1122 aa)
 initn: 252 init1: 103 opt: 259  Z-score: 201.1  bits: 47.1 E(85289): 0.00018
Smith-Waterman score: 309; 31.1% identity (61.7% similar) in 206 aa overlap (79-280:41-232)

       50        60        70        80        90       100        
pF1KB9 RAPPPTPAPSGCDPRLRPIILRRARSLPSSPERRQKAAGAPGAACRPGCSQKLRVRFADA
                                     : :: . ..       :. . . :: :::.
NP_002 SKDNFLEVPNLSDSLCEDEEVTFQPGFSPQPSRRGSDSSEDIYLDTPSSGTR-RVSFADS
               20        30        40        50        60          

      110       120       130       140       150       160        
pF1KB9 LGLELAQVKVFNAGDDPSVPLHVLSRLAINSDLCCSSQDLEFTLHCLVPDFPPPVEAADF
       .:..:..:: :.  . ::.     . . ...:.  . .      . :.: :  :    :.
NP_002 FGFNLVSVKEFDCWELPSAS----TTFDLGTDIFHTEE------YVLAPLFDLPSSKEDL
      70        80            90       100             110         

      170       180          190       200       210       220     
pF1KB9 GERLQRQLVCLERVTCSDLG---ISGTVRVCNVAFEKQVAVRYTFSGWRSTHEAVARWRG
        ..:: : . ::  : : ::   :.: .:: ::.::: : ::.... :.. .. .:..  
NP_002 MQQLQIQKAILES-TESLLGSTSIKGIIRVLNVSFEKLVYVRMSLDDWQTHYDILAEYV-
     120       130        140       150       160       170        

         230       240        250       260       270       280    
pF1KB9 PAGPEGTEDVFTFGFP-VPPFLLELGSRVHFAVRYQVAGAEYWDNNDHRDYSLTCRNHAL
       : . .:  : :.: .  :::.  . ::.:.: .::... . .:.::.  .:.. :.    
NP_002 PNSCDGETDQFSFKIVLVPPYQKD-GSKVEFCIRYETSVGTFWSNNNGTNYTFICQKKEQ
       180       190       200        210       220       230      

          290                                                      
pF1KB9 HMPRGECEESWIHFI                                             
                                                                   
NP_002 EPEPVKPWKEVPNRQIKGCLKVKSSKEESSVTSEENNFENPKNTDTYIPTIICSHEDKED
        240       250       260       270       280       290      




299 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:12:08 2016 done: Fri Nov  4 19:12:09 2016
 Total Scan time:  8.670 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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