Result of FASTA (omim) for pF1KB9791
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9791, 210 aa
  1>>>pF1KB9791 210 - 210 aa - 210 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7230+/-0.000256; mu= 8.5702+/- 0.016
 mean_var=110.1372+/-22.068, 0's: 0 Z-trim(123.4): 30  B-trim: 0 in 0/54
 Lambda= 0.122210
 statistics sampled from 43080 (43110) to 43080 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.505), width:  16
 Scan time:  7.400

The best scores are:                                      opt bits E(85289)
XP_005259019 (OMIM: 162662,613100) PREDICTED: neur ( 210) 1451 265.2 5.4e-71
NP_006170 (OMIM: 162662,613100) neurotrophin-4 pre ( 210) 1451 265.2 5.4e-71
XP_011525312 (OMIM: 162662,613100) PREDICTED: neur ( 210) 1451 265.2 5.4e-71
XP_006723295 (OMIM: 162662,613100) PREDICTED: neur ( 210) 1451 265.2 5.4e-71
XP_011525311 (OMIM: 162662,613100) PREDICTED: neur ( 210) 1451 265.2 5.4e-71
XP_011525310 (OMIM: 162662,613100) PREDICTED: neur ( 220) 1451 265.2 5.6e-71
NP_002518 (OMIM: 162660) neurotrophin-3 isoform 2  ( 257)  502 98.0 1.5e-20
XP_011519265 (OMIM: 162660) PREDICTED: neurotrophi ( 257)  502 98.0 1.5e-20
NP_001096124 (OMIM: 162660) neurotrophin-3 isoform ( 270)  502 98.0 1.6e-20
NP_001137277 (OMIM: 113505,164230,209880,607499,61 ( 247)  475 93.2 3.9e-19
NP_001137280 (OMIM: 113505,164230,209880,607499,61 ( 247)  475 93.2 3.9e-19
NP_001137284 (OMIM: 113505,164230,209880,607499,61 ( 247)  475 93.2 3.9e-19
NP_001137278 (OMIM: 113505,164230,209880,607499,61 ( 247)  475 93.2 3.9e-19
NP_733929 (OMIM: 113505,164230,209880,607499,61026 ( 247)  475 93.2 3.9e-19
NP_733931 (OMIM: 113505,164230,209880,607499,61026 ( 247)  475 93.2 3.9e-19
NP_001137288 (OMIM: 113505,164230,209880,607499,61 ( 247)  475 93.2 3.9e-19
NP_733928 (OMIM: 113505,164230,209880,607499,61026 ( 247)  475 93.2 3.9e-19
NP_001137285 (OMIM: 113505,164230,209880,607499,61 ( 247)  475 93.2 3.9e-19
NP_001137286 (OMIM: 113505,164230,209880,607499,61 ( 247)  475 93.2 3.9e-19
NP_001137279 (OMIM: 113505,164230,209880,607499,61 ( 247)  475 93.2 3.9e-19
NP_001700 (OMIM: 113505,164230,209880,607499,61026 ( 247)  475 93.2 3.9e-19
NP_001137283 (OMIM: 113505,164230,209880,607499,61 ( 247)  475 93.2 3.9e-19
NP_733927 (OMIM: 113505,164230,209880,607499,61026 ( 255)  475 93.2   4e-19
NP_733930 (OMIM: 113505,164230,209880,607499,61026 ( 262)  475 93.2 4.1e-19
NP_001137281 (OMIM: 113505,164230,209880,607499,61 ( 276)  475 93.2 4.3e-19
NP_001137282 (OMIM: 113505,164230,209880,607499,61 ( 329)  475 93.3   5e-19
XP_011518582 (OMIM: 113505,164230,209880,607499,61 ( 329)  475 93.3   5e-19
XP_006710726 (OMIM: 162030,608654) PREDICTED: beta ( 241)  371 74.8 1.3e-13
NP_002497 (OMIM: 162030,608654) beta-nerve growth  ( 241)  371 74.8 1.3e-13
XP_011539820 (OMIM: 162030,608654) PREDICTED: beta ( 296)  371 74.9 1.5e-13


>>XP_005259019 (OMIM: 162662,613100) PREDICTED: neurotro  (210 aa)
 initn: 1451 init1: 1451 opt: 1451  Z-score: 1395.5  bits: 265.2 E(85289): 5.4e-71
Smith-Waterman score: 1451; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:1-210)

               10        20        30        40        50        60
pF1KB9 MLPLPSCSLPILLLFLLPSVPIESQPPPSTLPPFLAPEWDLLSPRVVLSRGAPAGPPLLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLPLPSCSLPILLLFLLPSVPIESQPPPSTLPPFLAPEWDLLSPRVVLSRGAPAGPPLLF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LLEAGAFRESAGAPANRSRRGVSETAPASRRGELAVCDAVSGWVTDRRTAVDLRGREVEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLEAGAFRESAGAPANRSRRGVSETAPASRRGELAVCDAVSGWVTDRRTAVDLRGREVEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LGEVPAAGGSPLRQYFFETRCKADNAEEGGPGAGGGGCRGVDRRHWVSECKAKQSYVRAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LGEVPAAGGSPLRQYFFETRCKADNAEEGGPGAGGGGCRGVDRRHWVSECKAKQSYVRAL
              130       140       150       160       170       180

              190       200       210
pF1KB9 TADAQGRVGWRWIRIDTACVCTLLSRTGRA
       ::::::::::::::::::::::::::::::
XP_005 TADAQGRVGWRWIRIDTACVCTLLSRTGRA
              190       200       210

>>NP_006170 (OMIM: 162662,613100) neurotrophin-4 preprop  (210 aa)
 initn: 1451 init1: 1451 opt: 1451  Z-score: 1395.5  bits: 265.2 E(85289): 5.4e-71
Smith-Waterman score: 1451; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:1-210)

               10        20        30        40        50        60
pF1KB9 MLPLPSCSLPILLLFLLPSVPIESQPPPSTLPPFLAPEWDLLSPRVVLSRGAPAGPPLLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MLPLPSCSLPILLLFLLPSVPIESQPPPSTLPPFLAPEWDLLSPRVVLSRGAPAGPPLLF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LLEAGAFRESAGAPANRSRRGVSETAPASRRGELAVCDAVSGWVTDRRTAVDLRGREVEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LLEAGAFRESAGAPANRSRRGVSETAPASRRGELAVCDAVSGWVTDRRTAVDLRGREVEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LGEVPAAGGSPLRQYFFETRCKADNAEEGGPGAGGGGCRGVDRRHWVSECKAKQSYVRAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LGEVPAAGGSPLRQYFFETRCKADNAEEGGPGAGGGGCRGVDRRHWVSECKAKQSYVRAL
              130       140       150       160       170       180

              190       200       210
pF1KB9 TADAQGRVGWRWIRIDTACVCTLLSRTGRA
       ::::::::::::::::::::::::::::::
NP_006 TADAQGRVGWRWIRIDTACVCTLLSRTGRA
              190       200       210

>>XP_011525312 (OMIM: 162662,613100) PREDICTED: neurotro  (210 aa)
 initn: 1451 init1: 1451 opt: 1451  Z-score: 1395.5  bits: 265.2 E(85289): 5.4e-71
Smith-Waterman score: 1451; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:1-210)

               10        20        30        40        50        60
pF1KB9 MLPLPSCSLPILLLFLLPSVPIESQPPPSTLPPFLAPEWDLLSPRVVLSRGAPAGPPLLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLPLPSCSLPILLLFLLPSVPIESQPPPSTLPPFLAPEWDLLSPRVVLSRGAPAGPPLLF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LLEAGAFRESAGAPANRSRRGVSETAPASRRGELAVCDAVSGWVTDRRTAVDLRGREVEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLEAGAFRESAGAPANRSRRGVSETAPASRRGELAVCDAVSGWVTDRRTAVDLRGREVEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LGEVPAAGGSPLRQYFFETRCKADNAEEGGPGAGGGGCRGVDRRHWVSECKAKQSYVRAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGEVPAAGGSPLRQYFFETRCKADNAEEGGPGAGGGGCRGVDRRHWVSECKAKQSYVRAL
              130       140       150       160       170       180

              190       200       210
pF1KB9 TADAQGRVGWRWIRIDTACVCTLLSRTGRA
       ::::::::::::::::::::::::::::::
XP_011 TADAQGRVGWRWIRIDTACVCTLLSRTGRA
              190       200       210

>>XP_006723295 (OMIM: 162662,613100) PREDICTED: neurotro  (210 aa)
 initn: 1451 init1: 1451 opt: 1451  Z-score: 1395.5  bits: 265.2 E(85289): 5.4e-71
Smith-Waterman score: 1451; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:1-210)

               10        20        30        40        50        60
pF1KB9 MLPLPSCSLPILLLFLLPSVPIESQPPPSTLPPFLAPEWDLLSPRVVLSRGAPAGPPLLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MLPLPSCSLPILLLFLLPSVPIESQPPPSTLPPFLAPEWDLLSPRVVLSRGAPAGPPLLF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LLEAGAFRESAGAPANRSRRGVSETAPASRRGELAVCDAVSGWVTDRRTAVDLRGREVEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LLEAGAFRESAGAPANRSRRGVSETAPASRRGELAVCDAVSGWVTDRRTAVDLRGREVEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LGEVPAAGGSPLRQYFFETRCKADNAEEGGPGAGGGGCRGVDRRHWVSECKAKQSYVRAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LGEVPAAGGSPLRQYFFETRCKADNAEEGGPGAGGGGCRGVDRRHWVSECKAKQSYVRAL
              130       140       150       160       170       180

              190       200       210
pF1KB9 TADAQGRVGWRWIRIDTACVCTLLSRTGRA
       ::::::::::::::::::::::::::::::
XP_006 TADAQGRVGWRWIRIDTACVCTLLSRTGRA
              190       200       210

>>XP_011525311 (OMIM: 162662,613100) PREDICTED: neurotro  (210 aa)
 initn: 1451 init1: 1451 opt: 1451  Z-score: 1395.5  bits: 265.2 E(85289): 5.4e-71
Smith-Waterman score: 1451; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:1-210)

               10        20        30        40        50        60
pF1KB9 MLPLPSCSLPILLLFLLPSVPIESQPPPSTLPPFLAPEWDLLSPRVVLSRGAPAGPPLLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLPLPSCSLPILLLFLLPSVPIESQPPPSTLPPFLAPEWDLLSPRVVLSRGAPAGPPLLF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LLEAGAFRESAGAPANRSRRGVSETAPASRRGELAVCDAVSGWVTDRRTAVDLRGREVEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLEAGAFRESAGAPANRSRRGVSETAPASRRGELAVCDAVSGWVTDRRTAVDLRGREVEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LGEVPAAGGSPLRQYFFETRCKADNAEEGGPGAGGGGCRGVDRRHWVSECKAKQSYVRAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGEVPAAGGSPLRQYFFETRCKADNAEEGGPGAGGGGCRGVDRRHWVSECKAKQSYVRAL
              130       140       150       160       170       180

              190       200       210
pF1KB9 TADAQGRVGWRWIRIDTACVCTLLSRTGRA
       ::::::::::::::::::::::::::::::
XP_011 TADAQGRVGWRWIRIDTACVCTLLSRTGRA
              190       200       210

>>XP_011525310 (OMIM: 162662,613100) PREDICTED: neurotro  (220 aa)
 initn: 1451 init1: 1451 opt: 1451  Z-score: 1395.2  bits: 265.2 E(85289): 5.6e-71
Smith-Waterman score: 1451; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:11-220)

                         10        20        30        40        50
pF1KB9           MLPLPSCSLPILLLFLLPSVPIESQPPPSTLPPFLAPEWDLLSPRVVLSR
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRHHTRVLREMLPLPSCSLPILLLFLLPSVPIESQPPPSTLPPFLAPEWDLLSPRVVLSR
               10        20        30        40        50        60

               60        70        80        90       100       110
pF1KB9 GAPAGPPLLFLLEAGAFRESAGAPANRSRRGVSETAPASRRGELAVCDAVSGWVTDRRTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GAPAGPPLLFLLEAGAFRESAGAPANRSRRGVSETAPASRRGELAVCDAVSGWVTDRRTA
               70        80        90       100       110       120

              120       130       140       150       160       170
pF1KB9 VDLRGREVEVLGEVPAAGGSPLRQYFFETRCKADNAEEGGPGAGGGGCRGVDRRHWVSEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VDLRGREVEVLGEVPAAGGSPLRQYFFETRCKADNAEEGGPGAGGGGCRGVDRRHWVSEC
              130       140       150       160       170       180

              180       190       200       210
pF1KB9 KAKQSYVRALTADAQGRVGWRWIRIDTACVCTLLSRTGRA
       ::::::::::::::::::::::::::::::::::::::::
XP_011 KAKQSYVRALTADAQGRVGWRWIRIDTACVCTLLSRTGRA
              190       200       210       220

>>NP_002518 (OMIM: 162660) neurotrophin-3 isoform 2 prep  (257 aa)
 initn: 602 init1: 268 opt: 502  Z-score: 489.9  bits: 98.0 E(85289): 1.5e-20
Smith-Waterman score: 578; 46.3% identity (69.2% similar) in 201 aa overlap (18-209:69-256)

                            10        20        30        40       
pF1KB9              MLPLPSCSLPILLLFLLPSVPIESQPPPSTLPPFLAPEWDLL-----
                                     :  : .. :  :.. : .: . .::     
NP_002 IQADILKNKLSKQMVDVKENYQSTLPKAEAPREPERGGPAKSAFQPVIAMDTELLRQQRR
       40        50        60        70        80        90        

               50        60        70          80        90        
pF1KB9 --SPRVVLSRGAPAGPPLLFLLEAGAFRESAGAP--ANRSRRGVSETAPASRRGELAVCD
         ::::.:: ..:  :: :.:.:     . .:.:  :::. :    .   :.::: .:::
NP_002 YNSPRVLLSDSTPLEPPPLYLME-----DYVGSPVVANRTSRRKRYAEHKSHRGEYSVCD
      100       110       120            130       140       150   

      100       110       120       130       140       150        
pF1KB9 AVSGWVTDRRTAVDLRGREVEVLGEVPAAGGSPLRQYFFETRCKADNAEEGGPGAGGGGC
       . : ::::. .:.:.::..: ::::. . :.::..:::.:::::     :. :  .:  :
NP_002 SESLWVTDKSSAIDIRGHQVTVLGEIKT-GNSPVKQYFYETRCK-----EARPVKNG--C
           160       170       180        190            200       

      160       170       180       190       200       210
pF1KB9 RGVDRRHWVSECKAKQSYVRALTADAQGRVGWRWIRIDTACVCTLLSRTGRA
       ::.: .:: :.::..:.::::::.. .  ::::::::::.:::.:  . :: 
NP_002 RGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGRT
         210       220       230       240       250       

>>XP_011519265 (OMIM: 162660) PREDICTED: neurotrophin-3   (257 aa)
 initn: 602 init1: 268 opt: 502  Z-score: 489.9  bits: 98.0 E(85289): 1.5e-20
Smith-Waterman score: 578; 46.3% identity (69.2% similar) in 201 aa overlap (18-209:69-256)

                            10        20        30        40       
pF1KB9              MLPLPSCSLPILLLFLLPSVPIESQPPPSTLPPFLAPEWDLL-----
                                     :  : .. :  :.. : .: . .::     
XP_011 IQADILKNKLSKQMVDVKENYQSTLPKAEAPREPERGGPAKSAFQPVIAMDTELLRQQRR
       40        50        60        70        80        90        

               50        60        70          80        90        
pF1KB9 --SPRVVLSRGAPAGPPLLFLLEAGAFRESAGAP--ANRSRRGVSETAPASRRGELAVCD
         ::::.:: ..:  :: :.:.:     . .:.:  :::. :    .   :.::: .:::
XP_011 YNSPRVLLSDSTPLEPPPLYLME-----DYVGSPVVANRTSRRKRYAEHKSHRGEYSVCD
      100       110       120            130       140       150   

      100       110       120       130       140       150        
pF1KB9 AVSGWVTDRRTAVDLRGREVEVLGEVPAAGGSPLRQYFFETRCKADNAEEGGPGAGGGGC
       . : ::::. .:.:.::..: ::::. . :.::..:::.:::::     :. :  .:  :
XP_011 SESLWVTDKSSAIDIRGHQVTVLGEIKT-GNSPVKQYFYETRCK-----EARPVKNG--C
           160       170       180        190            200       

      160       170       180       190       200       210
pF1KB9 RGVDRRHWVSECKAKQSYVRALTADAQGRVGWRWIRIDTACVCTLLSRTGRA
       ::.: .:: :.::..:.::::::.. .  ::::::::::.:::.:  . :: 
XP_011 RGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGRT
         210       220       230       240       250       

>>NP_001096124 (OMIM: 162660) neurotrophin-3 isoform 1 p  (270 aa)
 initn: 586 init1: 268 opt: 502  Z-score: 489.6  bits: 98.0 E(85289): 1.6e-20
Smith-Waterman score: 578; 46.3% identity (69.2% similar) in 201 aa overlap (18-209:82-269)

                            10        20        30        40       
pF1KB9              MLPLPSCSLPILLLFLLPSVPIESQPPPSTLPPFLAPEWDLL-----
                                     :  : .. :  :.. : .: . .::     
NP_001 IQADILKNKLSKQMVDVKENYQSTLPKAEAPREPERGGPAKSAFQPVIAMDTELLRQQRR
              60        70        80        90       100       110 

               50        60        70          80        90        
pF1KB9 --SPRVVLSRGAPAGPPLLFLLEAGAFRESAGAP--ANRSRRGVSETAPASRRGELAVCD
         ::::.:: ..:  :: :.:.:     . .:.:  :::. :    .   :.::: .:::
NP_001 YNSPRVLLSDSTPLEPPPLYLME-----DYVGSPVVANRTSRRKRYAEHKSHRGEYSVCD
             120       130            140       150       160      

      100       110       120       130       140       150        
pF1KB9 AVSGWVTDRRTAVDLRGREVEVLGEVPAAGGSPLRQYFFETRCKADNAEEGGPGAGGGGC
       . : ::::. .:.:.::..: ::::. . :.::..:::.:::::     :. :  .:  :
NP_001 SESLWVTDKSSAIDIRGHQVTVLGEIKT-GNSPVKQYFYETRCK-----EARPVKNG--C
        170       180       190        200            210          

      160       170       180       190       200       210
pF1KB9 RGVDRRHWVSECKAKQSYVRALTADAQGRVGWRWIRIDTACVCTLLSRTGRA
       ::.: .:: :.::..:.::::::.. .  ::::::::::.:::.:  . :: 
NP_001 RGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGRT
      220       230       240       250       260       270

>>NP_001137277 (OMIM: 113505,164230,209880,607499,610269  (247 aa)
 initn: 480 init1: 284 opt: 475  Z-score: 464.5  bits: 93.2 E(85289): 3.9e-19
Smith-Waterman score: 547; 51.7% identity (70.9% similar) in 172 aa overlap (40-209:88-247)

      10        20        30        40        50        60         
pF1KB9 PILLLFLLPSVPIESQPPPSTLPPFLAPEWDLLSPRVVLSRGAPAGPPLLFLLEAGAFRE
                                     :: . ::.::  .:  ::::::::   ...
NP_001 SLADTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLE--EYKN
        60        70        80        90       100       110       

      70        80        90       100         110       120       
pF1KB9 SAGAPANRSRRGVSETAPASRRGELAVCDAVSGWVT--DRRTAVDLRGREVEVLGEVPAA
          : :: : :   .. :: :::::.:::..: :::  :..::::. :  : :: .::..
NP_001 YLDA-ANMSMRVRRHSDPA-RRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVS
          120       130        140       150       160       170   

       130       140       150       160       170       180       
pF1KB9 GGSPLRQYFFETRCKADNAEEGGPGAGGGGCRGVDRRHWVSECKAKQSYVRALTADAQGR
        :. :.:::.::.:.         :    ::::.:.::: :.:.. :::::::: :.. :
NP_001 KGQ-LKQYFYETKCNP-------MGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKR
            180              190       200       210       220     

       190       200       210
pF1KB9 VGWRWIRIDTACVCTLLSRTGRA
       .:::.:::::.:::::  . :: 
NP_001 IGWRFIRIDTSCVCTLTIKRGR 
         230       240        




210 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:58:06 2016 done: Fri Nov  4 18:58:07 2016
 Total Scan time:  7.400 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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