GENSCAN 1.0	Date run:  4-Nov-116	Time: 18:56:18

Sequence gi568815587r:3727566_3928138 : 200573 bp : 44.71% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.16 PlyA -   3373   3368    6                               1.05
 1.15 Term -   4013   3822  192  2  0   77   44   136 0.936   5.52
 1.14 Intr -   7759   7626  134  2  2   53   84   124 0.954   8.86
 1.13 Intr -  17084  16944  141  0  0  103   97    72 0.883   9.92
 1.12 Intr -  25843  25751   93  2  0   94  110    24 0.792   5.14
 1.11 Intr -  33061  32974   88  1  1  106   20    63 0.471   0.84
 1.10 Intr -  35474  35337  138  2  0   86   86    66 0.988   6.86
 1.09 Intr -  41179  41016  164  2  2   84   91   145 0.999  14.09
 1.08 Intr -  44363  44183  181  2  1   80   68   109 0.943   7.54
 1.07 Intr -  46174  46067  108  1  0   57   78    58 0.782   2.18
 1.06 Intr -  48456  48317  140  1  2   93   58    85 0.982   6.18
 1.05 Intr -  51484  51308  177  2  0  116   92    45 0.921   7.59
 1.04 Intr -  51692  51591  102  0  0   83   91    78 0.994   7.75
 1.03 Intr -  69985  69835  151  1  1   29  115    44 0.013   0.94
 1.02 Intr -  70118  69997  122  0  2  129  -21    69 0.010   0.31
 1.01 Init -  74740  74650   91  1  1   85   62    53 0.569   3.05
 1.00 Prom -  75182  75143   40                              -8.96

 2.00 Prom +  76212  76251   40                              -4.86
 2.01 Init +  83300  83319   20  1  2   77   82    16 0.487  -0.29
 2.02 Intr +  83685  83859  175  0  1   98   37   249 0.751  20.74
 2.03 Intr +  89824  89970  147  0  0   35   84   229 0.753  17.63
 2.04 Intr +  96318  96570  253  2  1   17   20   427 0.691  25.81
 2.05 Intr +  96705  96895  191  1  2   85   59   174 0.906  13.50
 2.06 Intr +  97455  97563  109  2  1   22   78   204 0.927  12.66
 2.07 Term +  97763  97893  131  0  2   59   46   148 0.986   6.04
 2.08 PlyA +  98765  98770    6                               1.05

 3.03 PlyA -  98957  98952    6                               1.05
 3.02 Term - 100641  99998  644  1  2  107   46   830 0.892  75.03
 3.01 Init - 107843 107729  115  2  1   67   84    71 0.527   4.97
 3.00 Prom - 122873 122834   40                              -5.26

 4.03 PlyA - 124029 124024    6                               1.05
 4.02 Term - 127093 127059   35  2  2  100   54    51 0.581   0.65
 4.01 Init - 128606 128192  415  2  1   95   60   171 0.841  11.74
 4.00 Prom - 154854 154815   40                              -2.06

 5.03 PlyA - 155263 155258    6                               1.05
 5.02 Term - 165357 164801  557  1  2   -8   42   558 0.672  36.09
 5.01 Init - 170310 170178  133  0  1   78   47    24 0.161  -2.40
 5.00 Prom - 170434 170395   40                              -2.46

 6.02 PlyA - 170630 170625    6                              -1.95
 6.01 Sngl - 172212 170641 1572  0  0   42   39   494 0.937  35.28
 6.00 Prom - 175433 175394   40                              -3.56

 7.03 PlyA - 175504 175499    6                               1.05
 7.02 Term - 195203 195140   64  1  1  107   47    46 0.616  -0.24
 7.01 Intr - 200082 199953  130  1  1   63  108    50 0.373   4.25

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  70118  69991  128  0  2  129   48    76 0.888   6.14


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815587r:3727566_3928138|GENSCAN_predicted_peptide_1|673_aa
MGYLPTKVPNNVSLEITKVTGNSSLEYSSSIRFQKTRCPMNNRVDPEWRPRPPIRGRRGR
SVRNEPLTPGGSGPLRAAPEAAVGGRGGSGGGDGFVGAARCSVSGGWQQGTPDTSPSPPN
RDTGFGTTSGGAFGTSAFGSSNNTGGLFGNSQTKPGGLFGTSSFSQPATSTSTGFGFGTS
TGTANTLFGTASTGTSLFSSQNNAFAQNKPTGFGNFGTSTSSGGLFGTTNTTSNPFGSTS
GSLFGPSSFTAAPTGTTIKFNPPTGTDTMVKAGVSTNISTKHQCITAMKEYESKSLEELR
LEDYQANRKGPQNQVGAGTTTGLFGSSPATSSATGLFSSSTTNSGFAYGQNKTAFGTSTT
GFGTNPGGLFGQQNQQTTSLFSKPFGQATTTQNTGFSFGNTSTIGQPSTNTMGLFGVTQA
SQPGGLFGTATNTSTGTAFGTGTGLFGQTNTGFGAVGSTLFGNNKLTTFGSSTTSAPSFG
TTSGGLFGFGTNTSGNSIFGSKPAPGTLGTGLGAGFGTALGAGQASLFGNNQPKIGGPLG
TGAFGAPGFNTTTATLGFGAPQAPVALTDPNASAAQQAVLQQHINSLTYSPFGDSPLFRN
PMSDPKKKEERLKPTNPAAQKALTTPTHYKLTPRPATRVRPKALQTTGTAKSHLFDGLDD
DEPSLANGAFMPK

>gi568815587r:3727566_3928138|GENSCAN_predicted_CDS_1|2022_bp
atgggctacttgcctaccaaagtacccaacaacgtatctttagaaatcaccaaagtcaca
ggaaattcttccttggagtattcctcatccattcggtttcaaaagacgcgttgcccaatg
aataacagggtcgacccagagtggcggccgcgtccaccaattcgcggacggcgagggcgg
agcgtccgcaacgagcctctgacgccgggcggctcgggccctctgcgcgctgcgcccgaa
gcggcggtcggtggcaggggtggtagcggcggcggcgacggtttcgtgggggccgcgcgc
tgctctgtgagcggcgggtggcagcaggggactcctgacacttccccttccccaccgaac
cgcgatactggctttggcactactagtggaggggcatttggaacatctgcatttggttct
agcaacaatactggaggcctctttggaaattcacagactaaaccaggaggattgtttgga
accagttcatttagccagccagctacctccacaagcactggctttgggtttggtacgtca
acaggaacagcaaataccttgtttggaactgcaagcacagggaccagtctcttctcatcc
caaaacaatgcctttgcacaaaataaaccaactggctttggcaattttggaaccagtact
agcagtggaggactctttggaaccacaaataccacctctaatccttttggcagcacatct
ggctccctctttgggccaagtagttttacagctgctcctactgggactactattaaattt
aaccctccaactggtacagatactatggtcaaagctggagttagcactaacataagtacc
aagcaccagtgtattactgctatgaaagaatatgaaagcaagtcactagaggaacttcgt
ttagaggattatcaggctaacaggaagggcccacagaaccaggtgggagcaggtaccaca
actggcttgtttgggtcttctccagccacttccagcgcaacaggactcttcagctcctcc
accactaattcaggctttgcatatggtcagaacaaaactgcctttggaactagtacaact
ggatttggaacaaatccaggtggtctctttggccaacagaatcagcagactaccagcctc
ttcagcaaaccatttggccaggctacaaccacccagaacactggcttttcctttggtaat
accagcaccataggacagccaagcaccaacaccatgggattatttggagtaacccaagcc
tcacagcctggaggtctttttgggacagctacaaacaccagcactgggacagcatttgga
acaggaacaggtctctttgggcagaccaatactggatttggtgctgttggttcgaccctg
tttggcaataacaagcttactacatttggaagcagcacaaccagtgcaccttcatttggt
acaaccagtggcgggctctttggttttggcacaaataccagtgggaatagtatttttgga
agtaaaccagcacctgggactcttggaactgggcttggtgcaggatttggaacagctctt
ggtgctggacaggcatctttgtttgggaacaaccaacctaagattggagggcctcttggt
acaggagcctttggggcccctggatttaatactacgacagccactttgggctttggagcc
ccccaggccccagtagctttgacagatccaaatgcttctgctgcccagcaggctgttctc
cagcagcacatcaatagtctaacatactcaccttttggagactctcctctcttccggaat
ccgatgtcagaccctaagaagaaggaagagagattgaaaccaacaaatccagcagcccag
aaggctcttactacacctactcattataaactgacaccccgccctgccactagagtccgg
ccaaaggctttacaaacaacaggcacagccaagtcacatctctttgatgggctggatgac
gatgaaccatccctagccaatggagcattcatgcccaagtga

>gi568815587r:3727566_3928138|GENSCAN_predicted_peptide_2|341_aa
MGHAIHWSDKMYQVPLPLDRDGTLVRLRFTMVALVTVCCPLVAFLFCILWSLLFHFKETT
ATHCGPLDPDGTLFRLRFTAMVWWAITFPVFGFFFCIIWSLVFHFEYTVATDCGVPNYLP
SVSSAIGGEVPQRYVWRFCIGLHSAPRFLVAFAYWNHYLSCTSPCSCYRPLCRLNFGLNV
VENLALLVLTYVSSSEDFTIHENAFIVFIASSLGHMLLTCILWRLTKKHTVSQEVRSIPS
GGSKAAQKKIKDICPQDSGNGEDRKSYSWKQRLFIINFISFFSALAVYFRHNMYCEAGVY
TIFAILEYTVVLTNMAFHMTAWWDFGNKELLITSQPEEKRF

>gi568815587r:3727566_3928138|GENSCAN_predicted_CDS_2|1026_bp
atgggccatgccatccactggtctgacaagatgtaccaggtcccactaccactggatcgg
gatgggaccctggtacggctccgcttcaccatggtggccctggtcacggtctgctgtcca
cttgtcgccttcctcttctgcatcctctggtccctgctcttccacttcaaggagacaacg
gccacacactgtgggcctttggaccccgatgggaccttgttccggcttcgcttcacagcc
atggtctggtgggccatcacttttcctgtgttcggcttcttcttctgcatcatctggtcc
ctggtgttccactttgagtacacggtggccactgactgtggggtgcccaattacctgccc
tcggtgagctcagccatcggcggggaggtgccccagcgctacgtgtggcgtttctgcatc
ggcctgcactcggcgcctcgcttcttggtggccttcgcctactggaaccactacctcagc
tgcacctccccgtgttcctgctatcgcccgctctgccgcctcaacttcggcctcaatgtc
gtggagaacctcgcgttgctagtgctcacttatgtctcctcctccgaggacttcaccatc
cacgaaaatgctttcattgtgttcattgcctcatccctcgggcacatgctcctcacctgc
attctctggcggttgaccaagaagcacacagtaagtcaggaggtacggtctatccctagc
gggggctccaaggcagcccagaagaaaatcaaggacatctgtcctcaggattcgggtaat
ggtgaggatcgcaagtcctacagctggaaacagcggctcttcatcatcaacttcatctcc
ttcttctcggcgctggctgtctactttcggcacaacatgtattgtgaggctggagtgtac
accatctttgccatcctggagtacactgttgtcttaaccaacatggcgttccacatgacg
gcctggtgggacttcgggaacaaggagctgctcataacctctcagcctgaggaaaagcga
ttctga

>gi568815587r:3727566_3928138|GENSCAN_predicted_peptide_3|252_aa
MKSTVNAGKGKAEEGVAVMSWRSWGTVLGLKDRKDLKGGHCSQRGPEERGGTASTTATAP
TMQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTA
GQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDL
RAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNP
TPIKRGRSCILL

>gi568815587r:3727566_3928138|GENSCAN_predicted_CDS_3|759_bp
atgaaaagtacggtcaatgctgggaaaggtaaggcagaagagggggttgctgtgatgtcc
tggagaagctggggaacagtactgggcctgaaggacaggaaggatctgaaggggggtcac
tgcagccagaggggtccagaagagagaggaggcactgcctccactacagcaactgcaccc
acgatgcagagcatcaagtgcgtggtggtgggtgatggggctgtgggcaagacgtgcctg
ctcatctgctacacaactaacgctttccccaaagagtacatccccaccgtgttcgacaat
tacagcgcgcagagcgcagttgacgggcgcacagtgaacctgaacctgtgggacactgcg
ggccaggaggagtatgaccgcctccgtacactctcctaccctcagaccaacgttttcgtc
atctgtttctccattgccagtccgccgtcctatgagaacgtgcggcacaagtggcatcca
gaggtgtgccaccactgccctgatgtgcccatcctgctggtgggcaccaagaaggacctg
agagcccagcctgacaccctacggcgcctcaaggagcagggccaggcgcccatcacaccg
cagcagggccaggcactggccaagcagatccacgctgtgcgctacctcgaatgctcagcc
ctgcaacaggatggtgtcaaggaagtgttcgccgaggctgtccgggctgtgctcaacccc
acgccgatcaagcgtgggcggtcctgcatcctcttgtga

>gi568815587r:3727566_3928138|GENSCAN_predicted_peptide_4|149_aa
MPSRLRSCPATREPAPSNSQRSSAPSLGAGGGLAPQVQQWVRRGCGGLSSCRFRRLRAGW
LRGCCQLRRLLHPCGRGRPESPRAQKWRRKRREEKRGEKGAPDLALPKSGEQQKLGRACD
PQGPEGAGVSGILGLLGRATSLVEEVSAT

>gi568815587r:3727566_3928138|GENSCAN_predicted_CDS_4|450_bp
atgccctcgcggctccgcagctgtccagccacccgcgagcctgccccctccaacagccaa
aggtcaagtgctccaagtttgggtgcgggaggagggctggctcctcaggtccaacagtgg
gtccgccggggctgcggcggcctgagctcgtgccgcttccggagacttcgggcagggtgg
ctgcggggctgctgtcagctccgcagattactacacccctgcggaagggggcggccggag
tctccgcgggcacagaagtggaggaggaagagaagagaagagaagagaggcgagaagggg
gcacctgacctcgccctgccgaagagcggcgagcagcagaagctggggagggcgtgcgac
ccgcagggtcctgagggcgcgggcgtctccgggatcctgggcctcctaggccgagctacc
tctctggtggaggaggtgtcagcgacttga

>gi568815587r:3727566_3928138|GENSCAN_predicted_peptide_5|229_aa
MEYYAAIKNDEFVSFVGTWMKLEIIILSKLSQEQKTKHHIFSLIDAAAAGSPVLSAVVNP
TVFFDIAVNSEPLGHVSFKLFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQG
GDFTHHNGTSSKSIYGEKFDDENFILKHTGPGILSMANAGPNTNSSQFFICTAKTEWLDG
KHVVFGKAKEGMNIVEAIEHFGSRNGKTSKKITTADCGQLLISLTCVLS

>gi568815587r:3727566_3928138|GENSCAN_predicted_CDS_5|690_bp
atggaatactatgcagccataaaaaatgatgagttcgtgtcctttgtagggacatggatg
aaattggaaatcatcattctcagtaaactatcgcaagaacaaaaaaccaaacaccacata
ttctcactcatagatgctgctgctgccgggagccccgtactatcagccgtggttaacccc
accgtgttcttcgacattgctgtcaacagcgagcccttgggccatgtctccttcaagcta
tttgcagacaaggttccaaagacagcagaaaactttcgtgctctgagcactggagagaaa
ggatttggttataagggttcctgctttcacagaattattccagggtttatgtgtcagggt
ggtgacttcacacaccataatggcactagcagcaagtccatctacggggagaaatttgat
gatgagaacttcatcctaaagcatacaggtcctggcatcttgtccatggcaaatgctgga
cccaacacaaacagttcccagtttttcatctgcactgccaagactgagtggttggatggc
aagcatgtggtctttggcaaggcgaaagaaggcatgaatattgtggaggccatagagcac
tttgggtccaggaatggcaagaccagcaagaagatcaccactgctgactgtggacaactc
ttaataagtttgacttgtgttttatcttag

>gi568815587r:3727566_3928138|GENSCAN_predicted_peptide_6|523_aa
MIISIDAEKAFDKIQQRFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLK
TGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIRLGKEEVKLSLFADDMIVYLENPIVS
AQNLLKLISNFSKLSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRVKYLGIQLT
RDVKDLFKENYKPLLSEIKEDTNKWKNIPCSWVGRINIVKMAMLPKVIYRFNAIPIKLPM
TFFTELEKTTLKFMWNQKRAHIAKSVLSQKNKAGGITLPDFKLYYKATVTKTAWYWYQNR
DIDQWNRTEPSEITPHIYNYLIFDKPEKNKQWGKDSLFNKWCWENWLAICRKLKLDPFLT
PYTKINSTWIKDLNVRPKIIKTLEENLGITIQDIGMGKDFMSKTPKAMATKAKIDKWDLI
KLKSFCTAKETTIRVNRQLTKWEKIFTTYSSDKGLISRIYNELKQIYKKKTNNPHQKVGK
GHEQTLLKRRHLCSQKTHEKMLTITGHQRNANQNHNEIPSHTS

>gi568815587r:3727566_3928138|GENSCAN_predicted_CDS_6|1572_bp
atgattatctcaatagatgcagaaaaggcctttgacaaaattcaacaacgcttcatgcta
aaaactctcaataaattaggtattgatgggatgtatctcaaaataataagagctatctat
gacaaacccacagccaatatcatactgaatggacaaaaactggaagcattccctttgaaa
actggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagtt
ctggccagggcaattaggcaggagaaggaaataaagggtattcgattaggaaaagaggaa
gtcaaattgtccctgtttgcagatgacatgattgtatatctagaaaaccccattgtctca
gcccaaaatctccttaagctgataagcaacttcagcaaactctcaggatacaaaatcaat
gtacaaaaatcacaagcattcttatacaccaataacagacaaacagagagccaaatcatg
agtgaactcccattcacaattgcttcaaagagagtaaaatacctaggaatccaacttaca
agggatgtgaaggacctcttcaaggagaactacaaaccactgctcagtgaaataaaagag
gatacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcgtgaaa
atggccatgctgcccaaggtaatttatagattcaatgccatccccatcaaactaccaatg
actttcttcacagaattggaaaaaactactttaaagttcatgtggaaccaaaaaagagcc
cacatcgccaagtcagtcctaagccaaaagaacaaagctggaggcatcacgctacctgac
ttcaaactatactacaaagctacagtaaccaaaacagcatggtactggtaccaaaacaga
gatatagatcaatggaacagaacagagccctcagaaataacgccgcatatctacaactat
ctgatctttgacaaacctgagaaaaacaagcaatggggaaaggattccctatttaataaa
tggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttaca
ccttatacaaaaattaattcaacatggattaaagacttaaacgttagacctaaaatcata
aaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaaggacttc
atgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaatt
aaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaactgaca
aaatgggagaaaattttcacaacctactcatctgacaaagggctaatatccagaatctac
aatgaactcaaacaaatttacaagaaaaaaacaaacaacccccatcaaaaagtgggcaaa
ggacatgaacagacacttctcaaaagaagacatttatgcagccaaaagacacatgaaaaa
atgctcaccatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatct
cacaccagttag

>gi568815587r:3727566_3928138|GENSCAN_predicted_peptide_7|64_aa
XTQFATCTTITAPCFFASQLFRVKVHDEWLRPKEPRANCEKGYKKEADPVKEEESLKEVF
LPRD

>gi568815587r:3727566_3928138|GENSCAN_predicted_CDS_7|195_bp
ngaactcaatttgctacctgcaccaccatcactgcaccctgcttctttgcatcacagctc
ttcagagtcaaagtccatgatgagtggctaagaccaaaagagcctagggcaaactgcgaa
aaaggttacaagaaagaagcagacccagttaaggaagaagaatccttaaaggaggttttc
ctgcccagggactga