Result of FASTA (omim) for
pF1KB9744
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9744, 532 aa
1>>>pF1KB9744 532 - 532 aa - 532 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.4784+/-0.000364; mu= -9.4446+/- 0.023
mean_var=324.1287+/-67.462, 0's: 0 Z-trim(124.2): 27 B-trim: 2106 in 2/57
Lambda= 0.071239
statistics sampled from 45532 (45564) to 45532 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.534), width: 16
Scan time: 10.620
The best scores are: opt bits E(85289)
NP_005180 (OMIM: 602770,613080) chromobox protein ( 532) 3508 374.0 6.5e-103
XP_011523684 (OMIM: 602770,613080) PREDICTED: chro ( 586) 3490 372.1 2.5e-102
XP_011523685 (OMIM: 602770,613080) PREDICTED: chro ( 501) 2914 312.9 1.5e-84
NP_116036 (OMIM: 602770,613080) chromobox protein ( 211) 647 79.7 1e-14
NP_003646 (OMIM: 603079) E3 SUMO-protein ligase CB ( 560) 442 58.9 4.9e-08
XP_016884168 (OMIM: 608457) PREDICTED: chromobox p ( 250) 349 49.1 1.9e-05
NP_783640 (OMIM: 608457) chromobox protein homolog ( 251) 348 49.0 2e-05
XP_006724240 (OMIM: 608457) PREDICTED: chromobox p ( 192) 342 48.3 2.5e-05
XP_006724241 (OMIM: 608457) PREDICTED: chromobox p ( 166) 335 47.5 3.7e-05
XP_005261470 (OMIM: 608457) PREDICTED: chromobox p ( 158) 332 47.2 4.4e-05
XP_006724238 (OMIM: 608457) PREDICTED: chromobox p ( 258) 334 47.6 5.7e-05
XP_006724237 (OMIM: 608457) PREDICTED: chromobox p ( 259) 333 47.4 6.1e-05
XP_011528327 (OMIM: 608457) PREDICTED: chromobox p ( 165) 326 46.6 7e-05
XP_006724239 (OMIM: 608457) PREDICTED: chromobox p ( 200) 322 46.3 0.00011
>>NP_005180 (OMIM: 602770,613080) chromobox protein homo (532 aa)
initn: 3508 init1: 3508 opt: 3508 Z-score: 1968.6 bits: 374.0 E(85289): 6.5e-103
Smith-Waterman score: 3508; 100.0% identity (100.0% similar) in 532 aa overlap (1-532:1-532)
10 20 30 40 50 60
pF1KB9 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KEHEKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLKEPDAPSKSKSSSSSSSSTSSSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KEHEKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLKEPDAPSKSKSSSSSSSSTSSSSSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DEEDDSDLDAKRGPRGRETHPVPQKKAQILVAKPELKDPIRKKRGRKPLPPEQKATRRPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DEEDDSDLDAKRGPRGRETHPVPQKKAQILVAKPELKDPIRKKRGRKPLPPEQKATRRPV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SLAKVLKTARKDLGAPASKLPPPLSAPVAGLAALKAHAKEACGGPSAMATPENLASLMKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SLAKVLKTARKDLGAPASKLPPPLSAPVAGLAALKAHAKEACGGPSAMATPENLASLMKG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 MASSPGRGGISWQSSIVHYMNRMTQSQAQAASRLALKAQATNKCGLGLDLKVRTQKGELG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MASSPGRGGISWQSSIVHYMNRMTQSQAQAASRLALKAQATNKCGLGLDLKVRTQKGELG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 MSPPGSKIPKAPSGGAVEQKVGNTGGPPHTHGASRVPAGCPGPQPAPTQELSLQVLDLQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSPPGSKIPKAPSGGAVEQKVGNTGGPPHTHGASRVPAGCPGPQPAPTQELSLQVLDLQS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 VKNGMPGVGLLARHATATKGVPATNPAPGKGTGSGLIGASGATMPTDTSKSEKLASRAVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VKNGMPGVGLLARHATATKGVPATNPAPGKGTGSGLIGASGATMPTDTSKSEKLASRAVA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PPTPASKRDCVKGSATPSGQESRTAPGEARKAATLPEMSAGEESSSSDSDPDSASPPSTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PPTPASKRDCVKGSATPSGQESRTAPGEARKAATLPEMSAGEESSSSDSDPDSASPPSTG
430 440 450 460 470 480
490 500 510 520 530
pF1KB9 QNPSVSVQTSQDWKPTRSLIEHVFVTDVTANLITVTVKESPTSVGFFNLRHY
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QNPSVSVQTSQDWKPTRSLIEHVFVTDVTANLITVTVKESPTSVGFFNLRHY
490 500 510 520 530
>>XP_011523684 (OMIM: 602770,613080) PREDICTED: chromobo (586 aa)
initn: 3490 init1: 3490 opt: 3490 Z-score: 1958.0 bits: 372.1 E(85289): 2.5e-102
Smith-Waterman score: 3490; 100.0% identity (100.0% similar) in 530 aa overlap (1-530:1-530)
10 20 30 40 50 60
pF1KB9 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KEHEKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLKEPDAPSKSKSSSSSSSSTSSSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KEHEKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLKEPDAPSKSKSSSSSSSSTSSSSSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DEEDDSDLDAKRGPRGRETHPVPQKKAQILVAKPELKDPIRKKRGRKPLPPEQKATRRPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DEEDDSDLDAKRGPRGRETHPVPQKKAQILVAKPELKDPIRKKRGRKPLPPEQKATRRPV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SLAKVLKTARKDLGAPASKLPPPLSAPVAGLAALKAHAKEACGGPSAMATPENLASLMKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLAKVLKTARKDLGAPASKLPPPLSAPVAGLAALKAHAKEACGGPSAMATPENLASLMKG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 MASSPGRGGISWQSSIVHYMNRMTQSQAQAASRLALKAQATNKCGLGLDLKVRTQKGELG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASSPGRGGISWQSSIVHYMNRMTQSQAQAASRLALKAQATNKCGLGLDLKVRTQKGELG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 MSPPGSKIPKAPSGGAVEQKVGNTGGPPHTHGASRVPAGCPGPQPAPTQELSLQVLDLQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSPPGSKIPKAPSGGAVEQKVGNTGGPPHTHGASRVPAGCPGPQPAPTQELSLQVLDLQS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 VKNGMPGVGLLARHATATKGVPATNPAPGKGTGSGLIGASGATMPTDTSKSEKLASRAVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VKNGMPGVGLLARHATATKGVPATNPAPGKGTGSGLIGASGATMPTDTSKSEKLASRAVA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PPTPASKRDCVKGSATPSGQESRTAPGEARKAATLPEMSAGEESSSSDSDPDSASPPSTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPTPASKRDCVKGSATPSGQESRTAPGEARKAATLPEMSAGEESSSSDSDPDSASPPSTG
430 440 450 460 470 480
490 500 510 520 530
pF1KB9 QNPSVSVQTSQDWKPTRSLIEHVFVTDVTANLITVTVKESPTSVGFFNLRHY
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QNPSVSVQTSQDWKPTRSLIEHVFVTDVTANLITVTVKESPTSVGFFNLRPLCSPLLPQE
490 500 510 520 530 540
XP_011 TRWHLWLQVTVLNRAGFFMAALLLSLNCSSLACVTESQLWSLSCRG
550 560 570 580
>>XP_011523685 (OMIM: 602770,613080) PREDICTED: chromobo (501 aa)
initn: 2914 init1: 2914 opt: 2914 Z-score: 1639.1 bits: 312.9 E(85289): 1.5e-84
Smith-Waterman score: 2914; 100.0% identity (100.0% similar) in 445 aa overlap (86-530:1-445)
60 70 80 90 100 110
pF1KB9 LAFQKKEHEKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLKEPDAPSKSKSSSSSSSSTS
::::::::::::::::::::::::::::::
XP_011 MSSCSRRSKLKEPDAPSKSKSSSSSSSSTS
10 20 30
120 130 140 150 160 170
pF1KB9 SSSSSDEEDDSDLDAKRGPRGRETHPVPQKKAQILVAKPELKDPIRKKRGRKPLPPEQKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSSSSDEEDDSDLDAKRGPRGRETHPVPQKKAQILVAKPELKDPIRKKRGRKPLPPEQKA
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB9 TRRPVSLAKVLKTARKDLGAPASKLPPPLSAPVAGLAALKAHAKEACGGPSAMATPENLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TRRPVSLAKVLKTARKDLGAPASKLPPPLSAPVAGLAALKAHAKEACGGPSAMATPENLA
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB9 SLMKGMASSPGRGGISWQSSIVHYMNRMTQSQAQAASRLALKAQATNKCGLGLDLKVRTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLMKGMASSPGRGGISWQSSIVHYMNRMTQSQAQAASRLALKAQATNKCGLGLDLKVRTQ
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB9 KGELGMSPPGSKIPKAPSGGAVEQKVGNTGGPPHTHGASRVPAGCPGPQPAPTQELSLQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGELGMSPPGSKIPKAPSGGAVEQKVGNTGGPPHTHGASRVPAGCPGPQPAPTQELSLQV
220 230 240 250 260 270
360 370 380 390 400 410
pF1KB9 LDLQSVKNGMPGVGLLARHATATKGVPATNPAPGKGTGSGLIGASGATMPTDTSKSEKLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDLQSVKNGMPGVGLLARHATATKGVPATNPAPGKGTGSGLIGASGATMPTDTSKSEKLA
280 290 300 310 320 330
420 430 440 450 460 470
pF1KB9 SRAVAPPTPASKRDCVKGSATPSGQESRTAPGEARKAATLPEMSAGEESSSSDSDPDSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SRAVAPPTPASKRDCVKGSATPSGQESRTAPGEARKAATLPEMSAGEESSSSDSDPDSAS
340 350 360 370 380 390
480 490 500 510 520 530
pF1KB9 PPSTGQNPSVSVQTSQDWKPTRSLIEHVFVTDVTANLITVTVKESPTSVGFFNLRHY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPSTGQNPSVSVQTSQDWKPTRSLIEHVFVTDVTANLITVTVKESPTSVGFFNLRPLCSP
400 410 420 430 440 450
XP_011 LLPQETRWHLWLQVTVLNRAGFFMAALLLSLNCSSLACVTESQLWSLSCRG
460 470 480 490 500
>>NP_116036 (OMIM: 602770,613080) chromobox protein homo (211 aa)
initn: 686 init1: 647 opt: 647 Z-score: 385.4 bits: 79.7 E(85289): 1e-14
Smith-Waterman score: 647; 100.0% identity (100.0% similar) in 96 aa overlap (1-96:1-96)
10 20 30 40 50 60
pF1KB9 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KEHEKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLKEPDAPSKSKSSSSSSSSTSSSSSS
::::::::::::::::::::::::::::::::::::
NP_116 KEHEKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLKVGGCAGYADPTSQHPLGVGGRQRE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DEEDDSDLDAKRGPRGRETHPVPQKKAQILVAKPELKDPIRKKRGRKPLPPEQKATRRPV
NP_116 GLGPSGRGWHFCQQSVPLLGKQEPPFFLSLSFCCQGPQPAESSSPPLPGASCFSLSCTPL
130 140 150 160 170 180
>>NP_003646 (OMIM: 603079) E3 SUMO-protein ligase CBX4 [ (560 aa)
initn: 474 init1: 329 opt: 442 Z-score: 265.3 bits: 58.9 E(85289): 4.9e-08
Smith-Waterman score: 486; 28.1% identity (55.0% similar) in 580 aa overlap (3-519:2-556)
10 20 30 40 50 60
pF1KB9 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
:: .:::.:::.: : .::.:::..:::::::::: :.:.:::::::::::::.:::.
NP_003 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQN
10 20 30 40 50
70 80 90 100 110
pF1KB9 KEHEKEVQN-RKRGKRPRGRPRKLTAMSSCSRRSKLKEPDAPSKSKSSSSSSSSTSSSSS
.:....... :::: .: .: .. . . .:::.. :.. . .. . .......
NP_003 RERQEQLMGYRKRGPKP--KPL-VVQVPTFARRSNVLTGLQDSSTDNRAKLDLGAQGKGQ
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB9 SDE-EDDSDLDAKRGPRGRET--HPVPQKKAQILVAKPELKDPIRKKRGRKPLPPEQKAT
. . : .: . :...: .: : :. .: . .:.. .: :..
NP_003 GHQYELNSKKHHQYQPHSKERAGKPPPPGKS----GKYYYQLNSKKHHPYQP-DPKMYDL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB9 RRPVSLAKVLKTARKDLGAPASKLPPPLSAPVAG----LAALK--AHAKEACGGPSAMAT
. . .. . . :::: . :: : :: :.:.: : : : : : .
NP_003 QYQGGHKEAPSPTCPDLGAKSH--PPDKWAQGAGAKGYLGAVKPLAGAAGAPGKGSEKGP
180 190 200 210 220
240 250 260 270 280
pF1KB9 PENLASLMKGMASSPGRGGISWQSSIVHYMNRMTQSQAQAASRLALKAQATN-KCGLGLD
:... : ... : :: . .::. :. . .. . ::.. : : .
NP_003 PNGMMPAPKEAVTGNGIGG---KMKIVKNKNKNGRIVIVMSKYMENGMQAVKIKSGEVAE
230 240 250 260 270 280
290 300 310 320 330 340
pF1KB9 LKVRT----QKGELGMSPPGSKIPKAPSGGAVEQKVGNTGGPPHTHGASRVPAGCPGPQP
..:. ... ::... : ..:: :.:: .::. . .. : ::
NP_003 GEARSPSHKKRAADERHPPADRTFKK-AAGAEEKKV---EAPPKRREEEVSGVSDPQPQD
290 300 310 320 330 340
350 360 370 380 390
pF1KB9 APTQELS--LQVLDLQSVK-NGMPGVGLLARHATATKGVPATNPAPG------------K
: ...:: ... : .. . : ::: . . :. .: : .
NP_003 AGSRKLSPTKEAFGEQPLQLTTKP--DLLAWDPARNTHPPSHHPHPHPHHHHHHHHHHHH
350 360 370 380 390 400
400 410 420 430
pF1KB9 GTGSGLIGASGATMPTDTSKSE----KLASRAVAPPT-----PASKR--DCVKGSATPSG
..: .: . . .. : .:..:... :: ::..: : ..: :.
NP_003 AVGLNLSHVRKRCLSETHGEREPCKKRLTARSISTPTCLGGSPAAERPADLPPAAALPQP
410 420 430 440 450 460
440 450 460 470 480
pF1KB9 Q-----ESRTAPGEARKAATLPEMSAGEESSSSDSDPDS-----------ASPPSTGQNP
. . : . : . : : ::: :: . :.. :.: .:...:
NP_003 EVILLDSDLDEPIDLRCVKTRSE--AGEPPSSLQVKPETPASAAVAVAAAAAPTTTAEKP
470 480 490 500 510
490 500 510 520 530
pF1KB9 SVSVQTSQDWKPTRSLIE------HVFVTDVTANLITVTVKESPTSVGFFNLRHY
. .:: .:..:: : ....:::::: .::: ::
NP_003 PAE---AQD-EPAESLSEFKPFFGNIIITDVTANCLTVTFKEYVTV
520 530 540 550 560
>>XP_016884168 (OMIM: 608457) PREDICTED: chromobox prote (250 aa)
initn: 401 init1: 305 opt: 349 Z-score: 218.8 bits: 49.1 E(85289): 1.9e-05
Smith-Waterman score: 350; 36.4% identity (61.4% similar) in 220 aa overlap (3-209:2-204)
10 20 30 40 50 60
pF1KB9 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
:::..::::::.: : .::.::::.::::::.:: :...:::::.::::::..:...
XP_016 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEE
10 20 30 40 50
70 80 90 100 110
pF1KB9 KEHEKEVQN-RKRGKRP-RGRPRKLTAMS-SCSRRSKLKEPDAPSKSKSSSSSSSSTSSS
::.. .... :::: .: : ..: .:. :...: :: : . .:.: .
XP_016 KEERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB9 SSSDEEDDSDLDAKRGPRGRETHPVPQKKAQILVAKPELKDPIRKKRGRKPLPP-----E
... : : .:: : : : .: . : . .:: .:: :
XP_016 AGAPELVD------KGPL-VPTLPFPLRKPR--------KAHKYLRLSRKKFPPRGPNLE
120 130 140 150 160
180 190 200 210 220
pF1KB9 QKATRRPVSLAK-----VLKTARKDLGAPASKLPPPLSAPVAGLAALKAHAKEACGGPSA
... :: . : . ::..: . ::.. : .: .:
XP_016 SHSHRRELFLQEPPAPDVLQAAGE--WEPAAQPPEEEDADLAEGPPPWTPALPSSEVTVT
170 180 190 200 210 220
230 240 250 260 270 280
pF1KB9 MATPENLASLMKGMASSPGRGGISWQSSIVHYMNRMTQSQAQAASRLALKAQATNKCGLG
XP_016 DITANSITVTFREAQAAEGFFRDRSGKF
230 240 250
>>NP_783640 (OMIM: 608457) chromobox protein homolog 7 [ (251 aa)
initn: 403 init1: 305 opt: 348 Z-score: 218.2 bits: 49.0 E(85289): 2e-05
Smith-Waterman score: 349; 36.8% identity (60.5% similar) in 223 aa overlap (3-212:2-205)
10 20 30 40 50 60
pF1KB9 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
:::..::::::.: : .::.::::.::::::.:: :...:::::.::::::..:...
NP_783 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEE
10 20 30 40 50
70 80 90 100 110
pF1KB9 KEHEKEVQN-RKRGKRP-RGRPRKLTAMS-SCSRRSKLKEPDAPSKSKSSSSSSSSTSSS
::.. .... :::: .: : ..: .:. :...: :: : . .:.: .
NP_783 KEERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB9 SSSDEEDDSDLDAKRGPRGRETHPVPQKKAQILVAKPELKDPIRKKRGRKPLPP-----E
... : : .:: : : : .: . : . .:: .:: :
NP_783 AGAPELVD------KGPL-VPTLPFPLRKPR--------KAHKYLRLSRKKFPPRGPNLE
120 130 140 150 160
180 190 200 210 220
pF1KB9 QKATRRPVSLAK-----VLKTARKDLGAPASKLPPPLSAPVAGLAALKAHAKEACGGPSA
... :: . : . ::..: . ::.. :: : ::
NP_783 SHSHRRELFLQEPPAPDVLQAAGE--WEPAAQ--PPEEEADADLAEGPPPWTPALPSSEV
170 180 190 200 210 220
230 240 250 260 270 280
pF1KB9 MATPENLASLMKGMASSPGRGGISWQSSIVHYMNRMTQSQAQAASRLALKAQATNKCGLG
NP_783 TVTDITANSITVTFREAQAAEGFFRDRSGKF
230 240 250
>>XP_006724240 (OMIM: 608457) PREDICTED: chromobox prote (192 aa)
initn: 403 init1: 305 opt: 342 Z-score: 216.6 bits: 48.3 E(85289): 2.5e-05
Smith-Waterman score: 343; 41.8% identity (68.6% similar) in 153 aa overlap (3-134:2-149)
10 20 30 40 50 60
pF1KB9 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
:::..::::::.: : .::.::::.::::::.:: :...:::::.::::::..:...
XP_006 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEE
10 20 30 40 50
70 80 90
pF1KB9 KEHEKEVQN-RKRGKRPRG---RPRK------LT---------AMSSCSRRSKL--KEPD
::.. .... :::: .:. .::: :. . : :.: .: .::
XP_006 KEERDRASGYRKRGPKPKRLLLQPRKAHKYLRLSRKKFPPRGPNLESHSHRRELFLQEPP
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB9 APSKSKSSSSSSSSTSSSSSSDEEDDSDLDAKRGPRGRETHPVPQKKAQILVAKPELKDP
::. .... . .. .:: :.:: .::
XP_006 APDVLQAAGEWEPA---AQPPEEEADADL--AEGPPPWTPALPSSEVTVTDITANSITVT
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB9 IRKKRGRKPLPPEQKATRRPVSLAKVLKTARKDLGAPASKLPPPLSAPVAGLAALKAHAK
XP_006 FREAQAAEGFFRDRSGKF
180 190
>>XP_006724241 (OMIM: 608457) PREDICTED: chromobox prote (166 aa)
initn: 422 init1: 295 opt: 335 Z-score: 213.6 bits: 47.5 E(85289): 3.7e-05
Smith-Waterman score: 338; 43.1% identity (67.2% similar) in 137 aa overlap (3-134:2-123)
10 20 30 40 50 60
pF1KB9 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
:::..::::::.: : .::.::::.::::::.:: :...:::::.::::::..:...
XP_006 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEE
10 20 30 40 50
70 80 90 100 110
pF1KB9 KEH----EKEVQNRKRGKRPRG-RPRKLTAMSSCSRRSKLKEPDAPSKSKSSSSSSSSTS
: : ..: : : :: .:..: :.:: ::. .... .
XP_006 KYGVLGTAGEERDRASGYRKRGPKPKRLL----------LQEPPAPDVLQAAGEWEPA--
60 70 80 90 100
120 130 140 150 160 170
pF1KB9 SSSSSDEEDDSDLDAKRGPRGRETHPVPQKKAQILVAKPELKDPIRKKRGRKPLPPEQKA
.. .:: :.:: .::
XP_006 -AQPPEEEADADL--AEGPPPWTPALPSSEVTVTDITANSITVTFREAQAAEGFFRDRSG
110 120 130 140 150 160
>>XP_005261470 (OMIM: 608457) PREDICTED: chromobox prote (158 aa)
initn: 424 init1: 305 opt: 332 Z-score: 212.3 bits: 47.2 E(85289): 4.4e-05
Smith-Waterman score: 350; 45.1% identity (69.2% similar) in 133 aa overlap (3-134:2-115)
10 20 30 40 50 60
pF1KB9 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
:::..::::::.: : .::.::::.::::::.:: :...:::::.::::::..:..
XP_005 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYE-
10 20 30 40 50
70 80 90 100 110
pF1KB9 KEHEKEVQNRKRGKRPRG-RPRKLTAMSSCSRRSKLKEPDAPSKSKSSSSSSSSTSSSSS
::: ..: : : :: .:..: :.:: ::. .... . ..
XP_005 ---EKEERDRASGYRKRGPKPKRLL----------LQEPPAPDVLQAAGEWEPA---AQP
60 70 80 90 100
120 130 140 150 160 170
pF1KB9 SDEEDDSDLDAKRGPRGRETHPVPQKKAQILVAKPELKDPIRKKRGRKPLPPEQKATRRP
.:: :.:: .::
XP_005 PEEEADADL--AEGPPPWTPALPSSEVTVTDITANSITVTFREAQAAEGFFRDRSGKF
110 120 130 140 150
532 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:39:50 2016 done: Fri Nov 4 18:39:51 2016
Total Scan time: 10.620 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]