Result of FASTA (ccds) for pF1KB9740
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9740, 517 aa
  1>>>pF1KB9740 517 - 517 aa - 517 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.6331+/-0.000947; mu= 0.9824+/- 0.057
 mean_var=297.8745+/-61.459, 0's: 0 Z-trim(115.3): 78  B-trim: 177 in 1/52
 Lambda= 0.074312
 statistics sampled from 15783 (15859) to 15783 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.487), width:  16
 Scan time:  3.090

The best scores are:                                      opt bits E(32554)
CCDS9126.2 FOXN4 gene_id:121643|Hs108|chr12        ( 517) 3606 399.9 3.5e-111
CCDS11232.1 FOXN1 gene_id:8456|Hs108|chr17         ( 648)  784 97.5 4.9e-20


>>CCDS9126.2 FOXN4 gene_id:121643|Hs108|chr12             (517 aa)
 initn: 3606 init1: 3606 opt: 3606  Z-score: 2109.5  bits: 399.9 E(32554): 3.5e-111
Smith-Waterman score: 3606; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)

               10        20        30        40        50        60
pF1KB9 MIESDTSSIMSGIIRNSGQNHHPSPQEYRLLATTSDDDLPGDLQSLSWLTAVDVPRLQQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MIESDTSSIMSGIIRNSGQNHHPSPQEYRLLATTSDDDLPGDLQSLSWLTAVDVPRLQQM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ASGRVDLGGPCVPHPHPGALAGVADLHVGATPSPLLHGPAGMAPRGMPGLGPITGHRDSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 ASGRVDLGGPCVPHPHPGALAGVADLHVGATPSPLLHGPAGMAPRGMPGLGPITGHRDSM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SQFPVGGQPSSGLQDPPHLYSPATQPQFPLPPGAQQCPPVGLYGPPFGVRPPYPQPHVAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 SQFPVGGQPSSGLQDPPHLYSPATQPQFPLPPGAQQCPPVGLYGPPFGVRPPYPQPHVAV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 HSSQELHPKHYPKPIYSYSCLIAMALKNSKTGSLPVSEIYSFMKEHFPYFKTAPDGWKNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 HSSQELHPKHYPKPIYSYSCLIAMALKNSKTGSLPVSEIYSFMKEHFPYFKTAPDGWKNS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 VRHNLSLNKCFEKVENKMSGSSRKGCLWALNLARIDKMEEEMHKWKRKDLAAIHRSMANP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 VRHNLSLNKCFEKVENKMSGSSRKGCLWALNLARIDKMEEEMHKWKRKDLAAIHRSMANP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 EELDKLISDRPESCRRPGKPGEPEAPVLTHATTVAVAHGCLAVSQLPPQPLMTLSLQSVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 EELDKLISDRPESCRRPGKPGEPEAPVLTHATTVAVAHGCLAVSQLPPQPLMTLSLQSVP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 LHHQVQPQAHLAPDSPAPAQTPPLHALPDLSPSPLPHPAMGRAPVDFINISTDMNTEVDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 LHHQVQPQAHLAPDSPAPAQTPPLHALPDLSPSPLPHPAMGRAPVDFINISTDMNTEVDA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 LDPSIMDFALQGNLWEEMKDEGFSLDTLGAFADSPLGCDLGASGLTPASGGSDQSFPDLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 LDPSIMDFALQGNLWEEMKDEGFSLDTLGAFADSPLGCDLGASGLTPASGGSDQSFPDLQ
              430       440       450       460       470       480

              490       500       510       
pF1KB9 VTGLYTAYSTPDSVAASGTSSSSQYLGAQGNKPIALL
       :::::::::::::::::::::::::::::::::::::
CCDS91 VTGLYTAYSTPDSVAASGTSSSSQYLGAQGNKPIALL
              490       500       510       

>>CCDS11232.1 FOXN1 gene_id:8456|Hs108|chr17              (648 aa)
 initn: 922 init1: 735 opt: 784  Z-score: 473.2  bits: 97.5 E(32554): 4.9e-20
Smith-Waterman score: 955; 41.7% identity (59.5% similar) in 482 aa overlap (77-488:152-620)

         50        60        70        80         90       100     
pF1KB9 SWLTAVDVPRLQQMASGRVDLGGPCVPHPHPGALAGVADLHVG-ATPSPLLHGPAGMAP-
                                     :: : .  .. :  :    .: : .. :  
CCDS11 PFHPYKRPFHEDVFPEAETTLALKGHSFKTPGPLEAFEEIPVDVAEAEAFLPGFSAEAWC
             130       140       150       160       170       180 

              110       120       130           140       150      
pF1KB9 RGMPG----LGPITGHRDSMSQFPVGGQPSSGL--QDPP--HLYSPATQPQFPLPPGAQQ
        :.:      :: .   .   . ::  . ..:.   .::  :.:  ..:: :      : 
CCDS11 NGLPYPSQEHGPQVLGSEVKVKPPVL-ESGAGMFCYQPPLQHMYC-SSQPPF-----HQY
             190       200        210       220        230         

        160       170       180       190       200       210      
pF1KB9 CPPVGLYGPPFGVRPPYPQPHVAVHSSQELHPKHYPKPIYSYSCLIAMALKNSKTGSLPV
        :  : :  :.     :   ..: ..: . :   .:::::::: :: :::::::::::::
CCDS11 SPGGGSYPIPYLGSSHYQYQRMAPQASTDGHQPLFPKPIYSYSILIFMALKNSKTGSLPV
          240       250       260       270       280       290    

        220       230       240       250       260       270      
pF1KB9 SEIYSFMKEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVENKMSGSSRKGCLWALNLARID
       ::::.:: ::::::::::::::::::::::::::::::::: ..::::::::::: :.::
CCDS11 SEIYNFMTEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVENKSGSSSRKGCLWALNPAKID
          300       310       320       330       340       350    

        280       290       300       310              320         
pF1KB9 KMEEEMHKWKRKDLAAIHRSMANPEELDKLISDRPES-------CRRPGKPGE-PEAPVL
       ::.::..::::::  :...:::.:::::.::.:. :.       :  ::  :  :  :. 
CCDS11 KMQEELQKWKRKDPIAVRKSMAKPEELDSLIGDKREKLGSPLLGCPPPGLSGSGPIRPLA
          360       370       380       390       400       410    

      330       340         350       360                          
pF1KB9 THATTVAVAHGCL-AVSQLPPQ-PLMTLSLQSVP-------LHHQV-------------Q
         :      :.   : . .: . ::. : .  .:       :: .              :
CCDS11 PPAGLSPPLHSLHPAPGPIPGKNPLQDLLMGHTPSCYGQTYLHLSPGLAPPGPPQPLFPQ
          420       430       440       450       460       470    

        370               380       390       400       410        
pF1KB9 PQAHL-------AP-DSPAPAQTPPLHALPDLSPSPLPHPAMGRAPVDFINISTDMNTEV
       :..::       .: ::: ::.::: :.   :.    : ::  :.  : .  . :..:..
CCDS11 PDGHLELRAQPGTPQDSPLPAHTPPSHSAKLLAE---PSPA--RTMHDTLLPDGDLGTDL
          480       490       500          510         520         

      420       430       440       450       460                  
pF1KB9 DALDPSIMDFALQGNLWEEMKDEGFSLDTLGAFADSPLGCDL------------------
       ::..::. :: .::::::..::....:: :   ..:: . ..                  
CCDS11 DAINPSLTDFDFQGNLWEQLKDDSLALDPLVLVTSSPTSSSMPPPQPPPHCFPPGPCLTE
     530       540       550       560       570       580         

                  470       480       490       500       510      
pF1KB9 ---GASGLT-PASGGSDQSFPDLQVTGLYTAYSTPDSVAASGTSSSSQYLGAQGNKPIAL
          ::. :. :.::::  .. ::..: ::.:.                            
CCDS11 TGSGAGDLAAPGSGGSG-ALGDLHLTTLYSAFMELEPTPPTAPAGPSVYLSPSSKPVALA
     590       600        610       620       630       640        

        
pF1KB9 L




517 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:38:03 2016 done: Fri Nov  4 18:38:04 2016
 Total Scan time:  3.090 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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