Result of FASTA (ccds) for pF1KB9726
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9726, 431 aa
  1>>>pF1KB9726 431 - 431 aa - 431 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8152+/-0.00105; mu= 2.7923+/- 0.064
 mean_var=464.9526+/-96.014, 0's: 0 Z-trim(117.7): 131  B-trim: 708 in 1/53
 Lambda= 0.059480
 statistics sampled from 18401 (18535) to 18401 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.569), width:  16
 Scan time:  3.340

The best scores are:                                      opt bits E(32554)
CCDS11528.1 HOXB3 gene_id:3213|Hs108|chr17         ( 431) 3074 277.6 1.7e-74
CCDS82154.1 HOXB3 gene_id:3213|Hs108|chr17         ( 358) 2566 233.9   2e-61
CCDS82153.1 HOXB3 gene_id:3213|Hs108|chr17         ( 299) 2140 197.2 1.8e-50
CCDS2270.1 HOXD3 gene_id:3232|Hs108|chr2           ( 432) 1031 102.3 9.9e-22
CCDS5404.1 HOXA3 gene_id:3200|Hs108|chr7           ( 443)  959 96.1 7.3e-20


>>CCDS11528.1 HOXB3 gene_id:3213|Hs108|chr17              (431 aa)
 initn: 3074 init1: 3074 opt: 3074  Z-score: 1451.1  bits: 277.6 E(32554): 1.7e-74
Smith-Waterman score: 3074; 100.0% identity (100.0% similar) in 431 aa overlap (1-431:1-431)

               10        20        30        40        50        60
pF1KB9 MQKATYYDNAAAALFGGYSSYPGSNGFGFDVPPQPPFQAATHLEGDYQRSACSLQSLGNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MQKATYYDNAAAALFGGYSSYPGSNGFGFDVPPQPPFQAATHLEGDYQRSACSLQSLGNA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 APHAKSKELNGSCMRPGLAPEPLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 APHAKSKELNGSCMRPGLAPEPLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 TNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 MKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 AYALPSNYQPPLKGCGAPQKYPPTPAPEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AYALPSNYQPPLKGCGAPQKYPPTPAPEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYAD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 PLPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PLPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQG
              370       380       390       400       410       420

              430 
pF1KB9 RIQEAPKLTHL
       :::::::::::
CCDS11 RIQEAPKLTHL
              430 

>>CCDS82154.1 HOXB3 gene_id:3213|Hs108|chr17              (358 aa)
 initn: 2566 init1: 2566 opt: 2566  Z-score: 1216.3  bits: 233.9 E(32554): 2e-61
Smith-Waterman score: 2566; 100.0% identity (100.0% similar) in 358 aa overlap (74-431:1-358)

            50        60        70        80        90       100   
pF1KB9 EGDYQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEPLSAPPGSPPPSAAPTSATSNS
                                     ::::::::::::::::::::::::::::::
CCDS82                               MRPGLAPEPLSAPPGSPPPSAAPTSATSNS
                                             10        20        30

           110       120       130       140       150       160   
pF1KB9 SNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGG
               40        50        60        70        80        90

           170       180       190       200       210       220   
pF1KB9 GSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMAN
              100       110       120       130       140       150

           230       240       250       260       270       280   
pF1KB9 LLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMT
              160       170       180       190       200       210

           290       300       310       320       330       340   
pF1KB9 PSYESPSPPAFGKAHQNAYALPSNYQPPLKGCGAPQKYPPTPAPEYEPHVLQANGGAYGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PSYESPSPPAFGKAHQNAYALPSNYQPPLKGCGAPQKYPPTPAPEYEPHVLQANGGAYGT
              220       230       240       250       260       270

           350       360       370       380       390       400   
pF1KB9 PTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCEP
              280       290       300       310       320       330

           410       420       430 
pF1KB9 HPTYTDLSSHHAPPPQGRIQEAPKLTHL
       ::::::::::::::::::::::::::::
CCDS82 HPTYTDLSSHHAPPPQGRIQEAPKLTHL
              340       350        

>>CCDS82153.1 HOXB3 gene_id:3213|Hs108|chr17              (299 aa)
 initn: 2140 init1: 2140 opt: 2140  Z-score: 1019.6  bits: 197.2 E(32554): 1.8e-50
Smith-Waterman score: 2140; 100.0% identity (100.0% similar) in 299 aa overlap (133-431:1-299)

            110       120       130       140       150       160  
pF1KB9 SSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGG
                                     ::::::::::::::::::::::::::::::
CCDS82                               MKESRQTSKLKNNSPGTAEGCGGGGGGGGG
                                             10        20        30

            170       180       190       200       210       220  
pF1KB9 GGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMA
               40        50        60        70        80        90

            230       240       250       260       270       280  
pF1KB9 NLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSM
              100       110       120       130       140       150

            290       300       310       320       330       340  
pF1KB9 TPSYESPSPPAFGKAHQNAYALPSNYQPPLKGCGAPQKYPPTPAPEYEPHVLQANGGAYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TPSYESPSPPAFGKAHQNAYALPSNYQPPLKGCGAPQKYPPTPAPEYEPHVLQANGGAYG
              160       170       180       190       200       210

            350       360       370       380       390       400  
pF1KB9 TPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCE
              220       230       240       250       260       270

            410       420       430 
pF1KB9 PHPTYTDLSSHHAPPPQGRIQEAPKLTHL
       :::::::::::::::::::::::::::::
CCDS82 PHPTYTDLSSHHAPPPQGRIQEAPKLTHL
              280       290         

>>CCDS2270.1 HOXD3 gene_id:3232|Hs108|chr2                (432 aa)
 initn: 1322 init1: 465 opt: 1031  Z-score: 503.6  bits: 102.3 E(32554): 9.9e-22
Smith-Waterman score: 1367; 50.7% identity (68.7% similar) in 454 aa overlap (1-431:17-432)

                               10        20        30          40  
pF1KB9                 MQKATYYDNAAAALFGGYSSYPGSNGFGFDVP--PQPPFQAATH
                       ::::.::.: .  :::::.    .. .:...:  : ::  ::. 
CCDS22 MLFEQGQQALELPECTMQKAAYYENPG--LFGGYGYSKTTDTYGYSTPHQPYPPPAAASS
               10        20          30        40        50        

             50        60         70                  80           
pF1KB9 LEGDYQRSACSLQSLGNA-APHAKSKELNGSCMRPGLA----------PEPLSA---PPG
       :. ::  ::::.:: .   ::  :. :::::::::: .          :  :..   :: 
CCDS22 LDTDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQ
       60        70        80        90       100       110        

       90       100       110       120          130       140     
pF1KB9 SPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNS---TLTKQIFPWMKESRQTSKLKNN
        :::   ::   :. .: ::   .  :: ::...:   :..::::::::::::.:: ::.
CCDS22 PPPPP--PTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNS
      120         130       140       150       160       170      

         150       160       170       180       190       200     
pF1KB9 SPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEK
          ..:.:                         :::::: : :::.::::::::::::::
CCDS22 CATAGESCE------------------------DKSPPGPA-SKRVRTAYTSAQLVELEK
        180                               190        200       210 

         210       220       230       240       250       260     
pF1KB9 EFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSP
       ::::::::::::::::::::::.:::::::::::::::::::::::.  : .. ::  ::
CCDS22 EFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSP
             220       230       240       250       260       270 

         270       280           290       300       310       320 
pF1KB9 PQPMQSTAGFMNALHSMTP----SYESPSPPAFGKAHQNAYALPSNYQPPLKGCGAPQKY
         :. ..:: .    .. :    .:..::::::.:.. : :.: . :  ::..:   :: 
CCDS22 --PLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGL-AAYTAPLSSCLPQQKR
               280       290       300       310        320        

             330       340       350       360       370       380 
pF1KB9 PPTPAPEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHPS
           :::.::: . .:::.... ..:::::::::. ... . : .:: ...:.::::  :
CCDS22 --YAAPEFEPHPMASNGGGFASANLQGSPVYVGGN-FVESMAPASGP-VFNLGHLSHPSS
        330       340       350       360        370        380    

             390       400       410       420       430 
pF1KB9 GNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQGRIQEAPKLTHL
       ...::. :  .  ..:::::.:::::::::.::.   :::. ::::::::
CCDS22 ASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHS--SQGRLPEAPKLTHL
          390       400       410         420       430  

>>CCDS5404.1 HOXA3 gene_id:3200|Hs108|chr7                (443 aa)
 initn: 831 init1: 605 opt: 959  Z-score: 470.1  bits: 96.1 E(32554): 7.3e-20
Smith-Waterman score: 1415; 50.4% identity (70.6% similar) in 476 aa overlap (1-431:1-443)

               10        20        30         40        50         
pF1KB9 MQKATYYDNAAAALFGGYSSYPGSNGFGFDVPPQP-PFQAATHLEGDYQRSACSLQSLGN
       ::::::::..:  ..:::  : ..:::....  :: : .::   .:.:.: :::::: ..
CCDS54 MQKATYYDSSA--IYGGYP-YQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSS
               10           20        30        40        50       

      60        70                       80        90       100    
pF1KB9 AAPHAKSKELNGSCMR---------PGLA------PEPLSAPPGSPPPSAAPTSATSNSS
       :. : :..::. .:.:         :.:.      : : .:::.  ::. ::   . . .
CCDS54 AGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPA
        60        70        80        90       100       110       

          110                   120        130       140       150 
pF1KB9 NGGGPSKSGPPKCG------------PGTNS-TLTKQIFPWMKESRQTSKLKNNSPGTAE
           ::...::. .            :  :: :..::::::::::::..: :..: ...:
CCDS54 APPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGE
       120       130       140       150       160       170       

             160       170       180       190       200       210 
pF1KB9 GCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNR
       .:.:                       ::::::.:.::::::::::::::::::::::::
CCDS54 SCAG-----------------------DKSPPGQASSKRARTAYTSAQLVELEKEFHFNR
       180                              190       200       210    

             220       230       240       250       260       270 
pF1KB9 YLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQS
       ::::::::::::::::.::::::::::::::::::::.::. .:::: ::. ::  :  .
CCDS54 YLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPP--G
          220       230       240       250       260       270    

             280         290       300        310           320    
pF1KB9 TAGFMNALHSMTPS--YESPSPPAFGKAHQNAYALP-SNYQPPLKGCGAP----QKYPPT
       ..:..:..::.. :  ::  ::: :.:  :..:.:: ..:   : .:. :    ..:  .
CCDS54 AGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAA
            280       290       300       310       320       330  

               330         340       350       360       370       
pF1KB9 PA-----PEYEPHV--LQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLS
        :     :.:.::.  ::.:: .:::: .:::::.:::. :..:.   .::.:.::.:: 
CCDS54 GAGAGGTPDYDPHAHGLQGNG-SYGTPHIQGSPVFVGGS-YVEPMSN-SGPALFGLTHLP
            340       350        360       370         380         

       380       390       400         410       420       430 
pF1KB9 HHPSGNLDYNGAPPMAPSQHHGPC--EPHPTYTDLSSHHAPPPQGRIQEAPKLTHL
       :  :: .::.:: :.. ..::::   :::::::::..::  : :::::::::::::
CCDS54 HAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGHH--PSQGRIQEAPKLTHL
     390       400       410       420         430       440   




431 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:32:41 2016 done: Fri Nov  4 18:32:42 2016
 Total Scan time:  3.340 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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