Result of FASTA (omim) for
pF1KB9677
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9677, 104 aa
1>>>pF1KB9677 104 - 104 aa - 104 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6201+/-0.000272; mu= 0.4360+/- 0.017
mean_var=141.8674+/-27.871, 0's: 0 Z-trim(123.4): 5 B-trim: 407 in 1/56
Lambda= 0.107679
statistics sampled from 43088 (43093) to 43088 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.505), width: 16
Scan time: 4.790
The best scores are: opt bits E(85289)
NP_001006640 (OMIM: 300237) transcription elongati ( 159) 266 51.1 5.9e-07
NP_001006641 (OMIM: 300237) transcription elongati ( 159) 266 51.1 5.9e-07
NP_004771 (OMIM: 300237) transcription elongation ( 159) 266 51.1 5.9e-07
XP_016885144 (OMIM: 300771) PREDICTED: transcripti ( 100) 226 44.8 3e-05
NP_689491 (OMIM: 300771) transcription elongation ( 100) 226 44.8 3e-05
>>NP_001006640 (OMIM: 300237) transcription elongation f (159 aa)
initn: 314 init1: 250 opt: 266 Z-score: 245.9 bits: 51.1 E(85289): 5.9e-07
Smith-Waterman score: 266; 43.4% identity (74.7% similar) in 99 aa overlap (8-101:65-158)
10 20 30
pF1KB9 MKSCQKMEGKPENESEPKHE--EEPKPEEKPEE---E
: .: .:. ... : : :.: .
NP_001 EEQSSEEQSSEEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGK
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB9 EKLEEEAKAKGTFRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRW
.:::: :.:.::: .: .:. :::.:.::::.:.. .::..:..::::::..:.:
NP_001 HKLEE-----GSFKERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHW
100 110 120 130 140
100
pF1KB9 KVNRNHPYPYLM
:..:..:::
NP_001 KAKRSRPYPI
150
>>NP_001006641 (OMIM: 300237) transcription elongation f (159 aa)
initn: 314 init1: 250 opt: 266 Z-score: 245.9 bits: 51.1 E(85289): 5.9e-07
Smith-Waterman score: 266; 43.4% identity (74.7% similar) in 99 aa overlap (8-101:65-158)
10 20 30
pF1KB9 MKSCQKMEGKPENESEPKHE--EEPKPEEKPEE---E
: .: .:. ... : : :.: .
NP_001 EEQSSEEQSSEEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGK
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB9 EKLEEEAKAKGTFRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRW
.:::: :.:.::: .: .:. :::.:.::::.:.. .::..:..::::::..:.:
NP_001 HKLEE-----GSFKERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHW
100 110 120 130 140
100
pF1KB9 KVNRNHPYPYLM
:..:..:::
NP_001 KAKRSRPYPI
150
>>NP_004771 (OMIM: 300237) transcription elongation fact (159 aa)
initn: 314 init1: 250 opt: 266 Z-score: 245.9 bits: 51.1 E(85289): 5.9e-07
Smith-Waterman score: 266; 43.4% identity (74.7% similar) in 99 aa overlap (8-101:65-158)
10 20 30
pF1KB9 MKSCQKMEGKPENESEPKHE--EEPKPEEKPEE---E
: .: .:. ... : : :.: .
NP_004 EEQSSEEQSSEEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGK
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB9 EKLEEEAKAKGTFRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRW
.:::: :.:.::: .: .:. :::.:.::::.:.. .::..:..::::::..:.:
NP_004 HKLEE-----GSFKERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHW
100 110 120 130 140
100
pF1KB9 KVNRNHPYPYLM
:..:..:::
NP_004 KAKRSRPYPI
150
>>XP_016885144 (OMIM: 300771) PREDICTED: transcription e (100 aa)
initn: 186 init1: 162 opt: 226 Z-score: 215.2 bits: 44.8 E(85289): 3e-05
Smith-Waterman score: 235; 42.5% identity (70.8% similar) in 106 aa overlap (2-101:3-99)
10 20 30 40 50
pF1KB9 MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKED
: :.. ::::. : ::.:: ..: : :. ...:.::.::.:::.:::::
XP_016 MQKPCKENEGKPKC-SVPKREE-----KRPYGE---FERQQTEGNFRQRLLQSLEEFKED
10 20 30 40 50
60 70 80 90 100
pF1KB9 IHNRHLSNEDMFREVDEID----EIRRVRNKLIVMR--WKVNRNHPYPYLM
: ::...:.: :: ::.. ::: .:.:. ... . .:..:::
XP_016 IDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI
60 70 80 90 100
>>NP_689491 (OMIM: 300771) transcription elongation fact (100 aa)
initn: 186 init1: 162 opt: 226 Z-score: 215.2 bits: 44.8 E(85289): 3e-05
Smith-Waterman score: 235; 42.5% identity (70.8% similar) in 106 aa overlap (2-101:3-99)
10 20 30 40 50
pF1KB9 MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKED
: :.. ::::. : ::.:: ..: : :. ...:.::.::.:::.:::::
NP_689 MQKPCKENEGKPKC-SVPKREE-----KRPYGE---FERQQTEGNFRQRLLQSLEEFKED
10 20 30 40 50
60 70 80 90 100
pF1KB9 IHNRHLSNEDMFREVDEID----EIRRVRNKLIVMR--WKVNRNHPYPYLM
: ::...:.: :: ::.. ::: .:.:. ... . .:..:::
NP_689 IDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI
60 70 80 90 100
104 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:11:27 2016 done: Fri Nov 4 18:11:27 2016
Total Scan time: 4.790 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]