GENSCAN 1.0	Date run:  4-Nov-116	Time: 18:05:36

Sequence gi568815594f:187902808_188103737 : 200930 bp : 41.98% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   5254   5295   42  0  0   58   90    53 0.721   2.97
 1.02 Intr +   8169   8311  143  2  2   90   75   129 0.323  10.03
 1.03 Term +   9598   9745  148  1  1  -27   43   225 0.233   2.89
 1.04 PlyA +  11545  11550    6                               1.05

 2.05 PlyA -  12050  12045    6                               1.05
 2.04 Term -  26077  25620  458  2  2   85   45   284 0.821  18.10
 2.03 Intr -  32851  32726  126  2  0   46   -9   157 0.293   1.53
 2.02 Intr -  34808  34670  139  2  1  117   25   108 0.554   6.52
 2.01 Init -  35168  35106   63  2  0   64   94    49 0.499   4.30
 2.00 Prom -  38023  37984   40                              -8.05

 3.02 PlyA -  38321  38316    6                               1.05
 3.01 Sngl -  40089  39901  189  0  0   70   37   202 0.628   8.16
 3.00 Prom -  45940  45901   40                              -3.65

 4.00 Prom +  53403  53442   40                              -3.65
 4.01 Init +  53975  54209  235  1  1   83   26   111 0.283   2.75
 4.02 Term +  57733  57896  164  2  2   16   48   185 0.729   4.42
 4.03 PlyA +  59503  59508    6                               1.05

 5.00 Prom +  59530  59569   40                              -4.35
 5.01 Init +  62054  62123   70  1  1   76   52    52 0.356   1.66
 5.02 Intr +  68024  68349  326  0  2   39   81   425 0.676  31.47
 5.03 Intr +  73761  73905  145  2  1   40   61    75 0.512  -1.07
 5.04 Term +  74033  74196  164  0  2  123   43    93 0.464   5.42
 5.05 PlyA +  76917  76922    6                               1.05

 6.06 PlyA -  77252  77247    6                               1.05
 6.05 Term -  80132  79992  141  2  0   69   41   138 0.316   4.15
 6.04 Intr -  84772  84653  120  1  0  111   -2    87 0.020   1.77
 6.03 Intr -  90044  89875  170  0  2   24   50   259 0.855  14.44
 6.02 Intr -  90414  90334   81  1  0   72   90    28 0.311   0.09
 6.01 Init -  94172  94121   52  2  1   80  101    43 0.298   4.17
 6.00 Prom -  94423  94384   40                             -11.04

 7.00 Prom +  94991  95030   40                              -5.45
 7.01 Sngl + 100001 100933  933  1  0   82   37   773 0.998  67.80
 7.02 PlyA + 102059 102064    6                               1.05

 8.06 PlyA - 102302 102297    6                               1.05
 8.05 Term - 109816 109716  101  2  2  114   43    77 0.430   3.11
 8.04 Intr - 129114 128965  150  1  0  105   89   110 0.438  12.01
 8.03 Intr - 132824 132704  121  2  1   45   83    69 0.460   1.25
 8.02 Intr - 133312 133154  159  1  0   26   61   146 0.652   4.96
 8.01 Init - 135658 135584   75  1  0   49  103    29 0.462   1.64
 8.00 Prom - 137532 137493   40                              -3.25

 9.00 Prom + 139125 139164   40                              -2.65
 9.01 Init + 142498 142597  100  0  1   24   91    88 0.629   3.17
 9.02 Term + 146737 147005  269  2  2   54   46   170 0.621   4.07
 9.03 PlyA + 148817 148822    6                               1.05

10.12 PlyA - 150957 150952    6                               1.05
10.11 Term - 160229 160077  153  2  0   96   38    95 0.342   2.24
10.10 Intr - 161449 161380   70  0  1   89  105    74 0.322   7.47
10.09 Intr - 165885 165845   41  0  2   73   82    34 0.043  -2.60
10.08 Intr - 174467 174285  183  2  0   20   51   180 0.117   6.56
10.07 Intr - 187724 187692   33  2  0   82   95    48 0.013   2.40
10.06 Intr - 189134 188578  557  0  2   81   -9   366 0.011  17.83
10.05 Intr - 194354 194254  101  1  2   98   89    33 0.950   3.23
10.04 Intr - 194539 194517   23  1  2  100  113    -3 0.967  -1.18
10.03 Intr - 195472 195398   75  1  0   10  115    79 0.732   1.59
10.02 Intr - 196368 196228  141  0  0    9  116   168 0.434  11.33
10.01 Init - 198419 198249  171  2  0   53   94   113 0.344   7.89

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl +  80935  81156  222  0  0   88   48   164 0.819   7.30
S.002 Term -  84772  84641  132  1  0  111   48   103 0.965   5.71
S.003 Term - 189134 188566  569  0  2   81   33   376 0.969  24.99


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815594f:187902808_188103737|GENSCAN_predicted_peptide_1|110_aa
MLWIEEVSFQCGRRGGYSGAFSKALPELIEKVFFVNKQRSRNASLPWSLVKVKCPTCGQE
RSRKPTEPQKRAATEKQAVKEAGQQLPYRGPHFHTILHAMERSVLHPGEA

>gi568815594f:187902808_188103737|GENSCAN_predicted_CDS_1|333_bp
atgctgtggatagaagaggtgtcattccagtgtggccggaggggaggatattctggagcc
ttttcaaaggctcttccagagctgattgagaaggttttcttcgtcaataaacagaggtca
aggaatgcctctttgccatggagtctggtcaaagttaagtgtcccacttgtggacaggaa
cggagcagaaaacccacagagcctcagaaacgagcagcaacagaaaaacaggctgttaag
gaagcaggtcaacagctcccctaccgtggtcctcatttccacaccatcctgcatgccatg
gaacgatccgtcctccaccctggagaagcttag

>gi568815594f:187902808_188103737|GENSCAN_predicted_peptide_2|261_aa
MNVWDSEQPRKSQGQMTFRLWGLCLCLSQSFILRGLGGDNCEPWRTENTELNRALLMLGY
AHDFCSSGNTLFSLFPQMPADQMSLKQAARLRATLTASQLVPGHSSQNSEPTQMRRNQKT
NPGNMTKQGSLTPPKITLAHFDSNQGEIPDLPEKEFRRLVIKLIREAPEKGKAQFKEVKE
MTQEMRAEMFKEIDSINKKESKLQETMDTLIEMQNALENLSNRLEQAEERTSELEDKAFK
LAQSCKGKEKRRKYEQSLQEV

>gi568815594f:187902808_188103737|GENSCAN_predicted_CDS_2|786_bp
atgaatgtgtgggactcagaacagccacggaaatcccaggggcagatgacgtttcggctc
tgggggctctgcctctgcctgtcccagtccttcatcctcagaggccttggaggtgacaac
tgcgaaccgtggaggacggagaacactgaactaaatcgtgcgcttctcatgttgggttac
gcacacgacttttgttccagtggaaatactttgttcagcctcttccctcagatgccggca
gaccagatgtccttgaagcaggcagcaaggcttcgtgcaacgctgacggcctctcagctt
gtccctggacactcttctcagaactctgagcctacccaaatgagaaggaaccagaaaacc
aaccctggtaatatgacaaaacaaggttctttaacaccccccaaaatcacactagctcac
ttcgattcaaaccaaggagaaatccctgatttacctgaaaaagaattcagaagattagtt
attaagctaatcagggaggcaccagagaaaggcaaggcccaatttaaggaagtcaaagaa
atgacacaagaaatgagggcagaaatgttcaaggaaatagatagcataaataaaaaagaa
tcgaaacttcaggaaacaatggacacacttatagaaatgcaaaacgctctggaaaatctc
agcaatagactcgaacaagcagaagaaagaacttcagagcttgaagacaaggctttcaaa
ttagcccaatcctgcaaaggcaaagaaaaaagaagaaaatatgaacaaagcctccaagaa
gtctag

>gi568815594f:187902808_188103737|GENSCAN_predicted_peptide_3|62_aa
MDRLSLIGTVHLSDNVKQVKEFAKLIWGKEVLDSEKSQCKASAESVPTLSEEIEGQGSGR
LS

>gi568815594f:187902808_188103737|GENSCAN_predicted_CDS_3|189_bp
atggacaggttgagtcttattgggacggtgcatttaagtgacaatgtgaagcaggtgaag
gaatttgccaagttgatctggggaaaggaagtcctggacagtgagaagagccagtgcaaa
gccagtgcagagagcgtgccaactttgtccgaggagattgaggggcagggcagcggcaga
ttaagttaa

>gi568815594f:187902808_188103737|GENSCAN_predicted_peptide_4|132_aa
MDEAGNHHSQQTITRTENQTSHVLTHRWELNNENTWTQSGEHQTPGPVVGWRERRGIALG
EIPNVNDKLMGAANQHGTLMSTDCRIRSQPQNTFTASPDLVFDGITGYQRLAKWICETDH
RKSQTTYAKARK

>gi568815594f:187902808_188103737|GENSCAN_predicted_CDS_4|399_bp
atggatgaagctggaaaccatcattctcagcaaactatcacaaggacagaaaaccaaaca
tcacatgttcttactcataggtgggaactgaacaatgagaacacttggacacagagtggg
gaacatcaaacaccggggcctgtcgtcgggtggagggagaggagagggatagcattagga
gaaatacctaatgtaaatgacaagttaatgggtgcagcaaatcaacatggcacactaatg
tcgactgattgtagaattcggtcacagccacagaataccttcacagcatcacctgattta
gtgtttgatggaataaccgggtaccagcgactggccaagtggatatgtgaaactgatcat
cgcaaaagtcaaacaacctatgcaaaggccagaaaatga

>gi568815594f:187902808_188103737|GENSCAN_predicted_peptide_5|234_aa
MPGKALAGPGWPERPPRRPIIEVDRVEDRLAWSKDINAYNGEESTEKLPFRIIHDKNRDL
FILLGMLDPAEKDEKDMPVTARVVFVIGPDKKPKLSIIYLATTGRNFDEILRVVTSLQLT
AEKRVATPVDWKGSPLLSVQVPTEPTVYLSEKKGKLFPGSWLITRRTKGFCAGPCVLACA
VLYTKKKMPFLTSVPGPQLKEQSLGWICEGHHLTTTGAAHLKLSQSAHTNKEIL

>gi568815594f:187902808_188103737|GENSCAN_predicted_CDS_5|705_bp
atgcccggaaaagccctggctggccctggttggcctgaacgcccaccccgtaggccgata
attgaggtcgaccgtgttgaggaccgtcttgcctggagcaaggatatcaatgcttacaat
ggtgaagaatccacagaaaagttaccttttcgcatcatccatgataagaatcgggacctt
ttcatcctgttgggcatgctggatccagcggagaaggatgaaaaggacatgcctgtgaca
gctcgtgtggtgtttgttattggtcctgataagaagccgaagctgtctatcatctacctg
gctaccactggcaggaactttgatgagattctcagggtagtcacctctctccagctgaca
gcagaaaagagggttgccaccccagttgattggaagggaagccccctcctctctgtgcaa
gttcccacggagcccaccgtgtacttgtctgaaaagaaggggaaacttttccctgggagc
tggttaatcacacgaagaacaaaaggcttctgtgccggaccttgcgtgcttgcctgtgca
gtgctttacacgaagaaaaagatgcccttcctcacaagtgtacctggcccacagctcaaa
gagcagagcttgggttggatttgtgaagggcaccatttgaccaccaccggggcagcccat
ctaaaactctcccagtcagctcatactaataaggaaatcttgtag

>gi568815594f:187902808_188103737|GENSCAN_predicted_peptide_6|187_aa
MAGRKVGAGARPRRGADGGGSRPWWIRIPGLLGFECGMARSEQEGISVDGRASLTGEGIV
MEGPEMSGGECGEAMQAQTLGPRRPWEELRSSVQEPWERNILKESTKCALEQVDLGDVVD
IKKPVQPLSSSGMPCCPIPRKSCPFTDRCVPLSPRYSRTMFSYPAPHFDFPPLNAESSPL
AYNAAIA

>gi568815594f:187902808_188103737|GENSCAN_predicted_CDS_6|564_bp
atggcgggcaggaaggtgggggctggggcgaggcccaggcgcggggctgacggcggaggt
tctaggccctggtggatacgtattcctggcctcctggggtttgaatgcggaatggccagg
tcagaacaggagggaatcagcgtggacggcagagcctccctgacaggagagggaatagtt
atggaaggacctgagatgagtggaggcgagtgtggagaggctatgcaggcccagactctg
ggaccccgtaggccatgggaagaacttcgatcttcagtccaggagccctgggaacggaat
attctgaaagaatccaccaaatgtgccttagaacaggttgacttaggtgatgtagtcgat
ataaagaaaccagtgcagcccctcagctcttcaggcatgccgtgctgtcccatccccagg
aaaagctgccccttcactgatcgctgcgtgcccctttctccacgctactcaaggacgatg
ttcagttatcccgctccccattttgactttccccctctgaacgctgaatcatccccattg
gcatacaatgctgcgatagcatga

>gi568815594f:187902808_188103737|GENSCAN_predicted_peptide_7|310_aa
MSQQLKKRAKTRHQKGLGGRAPSGAKPRQGKSSQDLQAEIEPVSAVWALCDGYVCYEPGP
QALGGDDFSDCYIECVIRGEFSQPILEEDSLFESLEYLKKGSEQQLSQKVFEASSLECSL
EYMKKGVKKELPQKIVGENSLEYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARKKPPINK
EYDSLSAIACPQSGCTRKLRNRAALRKHLLIHGPRDHVCAECGKAFVESSKLKRHFLVHT
GEKPFRCTFEGCGKRFSLDFNLRTHVRIHTGEKRFVCPFQGCNRRFIQSNNLKAHILTHA
NTNKNEQEGK

>gi568815594f:187902808_188103737|GENSCAN_predicted_CDS_7|933_bp
atgagccagcaactgaagaaacgggcaaagacaagacaccagaaaggcctgggtggaaga
gcccccagtggggctaagcccaggcaaggcaagtcaagccaagacctgcaggcggaaata
gaacctgtcagcgcggtgtgggccttatgtgatggctatgtgtgctatgagcctggccct
caggctctcggaggggatgatttctcagactgttacatagaatgcgtcataaggggtgag
ttttctcaacccatcctggaagaggactcactttttgagtccttggaatacctaaagaaa
ggatcagaacaacagctttctcaaaaggttttcgaagcaagctcccttgaatgttctttg
gaatacatgaaaaaaggggtaaagaaagagcttccacaaaagatagttggagagaattcg
cttgagtattctgagtacatgacaggcaagaagcttccgcctggaggaatacctggcatt
gacctatcagatcctaaacagctcgcagaatttgctagaaagaagccccccataaataaa
gaatatgacagtctgagcgcaatcgcttgtcctcagagtggatgcactaggaagttgagg
aatagagctgccctgagaaagcatctcctcattcatggtccccgagaccacgtctgtgcg
gaatgtgggaaagcgttcgttgagagctcaaaactaaagagacatttcctggttcatact
ggagagaagccgtttcggtgcacttttgaagggtgcggaaagcgcttctctctggacttt
aatttgcgtacgcacgtgcgcatccacacgggggagaaacgtttcgtgtgtccctttcaa
ggctgcaacaggaggtttattcagtcaaataacctgaaagcccacatcctaacgcatgca
aatacgaacaagaatgaacaagagggaaagtag

>gi568815594f:187902808_188103737|GENSCAN_predicted_peptide_8|201_aa
MWVKICFSQPEMTRLNLVSYTSSGQGKCTCKNNSIKTPTSKCQVPTEGSQSEELLETVGC
MSLTLAEIKKKGNKKTWKRIHLCAFQRVPLSVLNGMGNHKKIQEQALCVGAMRLCAHSGS
EEGGTSSSKLMFYTRAFRSCDSTFKTENLSPFHLLSSVLQQESHRHYARPLPVAGLDCAQ
EGGLGVVMLLKRQLVSKAAAN

>gi568815594f:187902808_188103737|GENSCAN_predicted_CDS_8|606_bp
atgtgggtgaaaatctgcttctctcaaccagaaatgacaagattaaacctcgtaagctat
acaagcagtggccagggaaaatgtacatgtaaaaacaacagcatcaagacacctacatca
aaatgtcaagtccctactgaaggaagccagagtgaagaattactggagactgttggctgc
atgtccctcactcttgccgaaataaagaaaaagggcaataagaaaacctggaaaagaatc
cacctgtgtgcctttcaacgggtccctttgtctgtgctgaatggaatgggaaaccacaaa
aaaatacaggagcaggccctttgtgtaggtgccatgagactctgtgcccacagtggaagc
gaggagggtggcacatcatcctcaaaactcatgttctacacccgagccttcagatcctgt
gactctaccttcaaaacagagaatctgagcccttttcacctgctcagctcagtcctgcag
caagaaagccataggcattatgcaaggcctctgcctgtggctggcttggattgtgcccag
gagggtggtcttggggtagtcatgcttcttaaacggcagttggtttccaaggcagcagca
aactag

>gi568815594f:187902808_188103737|GENSCAN_predicted_peptide_9|122_aa
MLIAYAHSLPPFTITNSETASNSSQVNGIKLLGLLNCVSQNAAVFGERILKDVMKLRPLG
WALIQSDCCLCKKRKLGHTLGHPCEAAARAKERGLRGEEGPRRQPQLGLPAFRTPRKWIY
AG

>gi568815594f:187902808_188103737|GENSCAN_predicted_CDS_9|369_bp
atgctaattgcctatgcacattctctcccacctttcaccatcacaaattcagaaacagcc
agcaactcctcacaagtgaatggtattaagctgttaggtctcctaaactgcgtatctcag
aatgcggctgtgtttggagagaggatcttaaaagacgtgatgaagttaaggccattaggg
tgggccttaatccaatctgactgctgtctttgtaagaagaggaaattgggacacaccctg
ggacacccctgtgaagcagctgcaagagccaaggagaggggcctcagaggagaggaagga
ccccgccgacagcctcagcttgggcttccagccttcaggactccgagaaaatggatctat
gctggttaa

>gi568815594f:187902808_188103737|GENSCAN_predicted_peptide_10|515_aa
MIESEYSMRLRLLNEECEQNLQRQQECISDLNLRETLLNQAIKLATELEEMFQEMLQRLG
RVGRENMEKLKESEARASEQVRSLLKLIVELEKKCGEGTLALLKCLDLEIRPPELREMNF
CCAEATQSMNAKYSLERSKSLLLEHLEPAHITDLSLCHIRGLSSMFRVLQRHLTLDPETA
HPCLALSEDLRTMRLRHGQQDGAGNPERLDFSAMVLAAESFTSGRHYWEVDVEKATRWQV
GIYHGSADAKGSTARASGEKVLLTGSVMGTEWTLWVFPPLKRLFLEKKLDTVGVFLDCEH
GQISFYNVTEMSLIYNFSHCAFQGALRPVFSLCIPNGDTSPDSLTILQHGPSCDATEQFD
LLEEARQHFANRDQMFHLINKECIQPDKGITRHTPPQSVLTRGLWGYQTAGLHQLETAIL
TDPILLSLRGIWQGHGTVVEGSSTPPVLESSDPNRGRRHCTTDIPTELSAAVTPTPLFFK
HTTRTASRGPDTCWPLGLEYPPGNSPTAPTHAASI

>gi568815594f:187902808_188103737|GENSCAN_predicted_CDS_10|1548_bp
atgattgagtctgagtatagtatgagactccggttgttgaatgaagagtgtgagcagaat
ctccagagacagcaggaatgcatatctgacttgaacctgagagaaacccttctgaatcaa
gcgatcaagcttgccaccgagctagaggagatgttccaggaaatgctacagagactgggc
cgtgtggggagagagaacatggagaaactgaaggagagtgaagccagggcttctgaacag
gtccgcagcctcctaaagctcatcgtggagcttgagaaaaagtgtggggaaggcaccttg
gcattgctcaagtgccttgatcttgaaattcggcctccagaactgcgagaaatgaatttc
tgctgtgcagaagctactcagtctatgaatgcaaaatactctttagaaaggagcaagtca
ctgctgcttgagcatctggagcccgctcatatcacagacctgagtttatgccacataaga
ggactcagcagcatgttcagagtactccagagacatttaacattggatcctgaaacagct
catccctgcctggcactatctgaggacctgagaactatgagattgagacatgggcagcag
gatggggctggcaacccagaaagattggatttcagtgccatggtgctggctgcggagagc
ttcacctcagggaggcactactgggaggtggacgtggaaaaggcaaccaggtggcaagtg
ggcatataccacggctctgcagacgcgaagggcagcacggccagagcttccggagagaaa
gtcttgctcacggggtcggtgatggggaccgagtggactctctgggtcttcccccctctg
aaaaggctcttcctggaaaagaagttggacacagttggcgttttccttgactgcgaacac
gggcagatatcattctacaatgtgaccgagatgtccctcatttacaatttctcccattgc
gccttccaaggagctctcaggcctgtgttttccctctgtatcccaaatggagacacaagt
ccagactccctcaccatcttacaacatggtccttcttgtgatgctactgaacaatttgat
ttattagaagaagcccgacagcactttgccaacagggaccaaatgtttcacctgatcaac
aaagagtgcatccagccagataagggcatcaccaggcacactcctccacaatcagtcctc
accagaggactctggggctatcaaacagcaggacttcaccagctcgaaacagccatctta
acagaccccatcttgctgtcactgagggggatttggcagggtcatgggacagtagtggag
ggaagctctaccccacctgtcctggagagctctgacccgaatcgtggacgccgtcactgc
accacggacattccgactgaactctctgctgcagtaactccaactcccctgttcttcaaa
cacacaacacgcactgccagtcgaggccctgacacatgctggccattaggcctggaatac
cctcccggaaacagccccacggctcctacccatgctgcttccatctaa