FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9661, 343 aa
  1>>>pF1KB9661 343 - 343 aa - 343 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5812+/-0.000347; mu= 12.6857+/- 0.022
 mean_var=156.3141+/-33.843, 0's: 0 Z-trim(119.0): 22  B-trim: 3524 in 2/54
 Lambda= 0.102583
 statistics sampled from 32526 (32560) to 32526 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.382), width:  16
 Scan time:  7.200

The best scores are:                                      opt bits E(85289)
NP_008909 (OMIM: 300951,300953) RING finger protei ( 343) 2392 365.5 9.4e-101


>>NP_008909 (OMIM: 300951,300953) RING finger protein 11  (343 aa)
 initn: 2392 init1: 2392 opt: 2392  Z-score: 1929.8  bits: 365.5 E(85289): 9.4e-101
Smith-Waterman score: 2392; 100.0% identity (100.0% similar) in 343 aa overlap (1-343:1-343)

               10        20        30        40        50        60
pF1KB9 MAEQLSPGKAVDQVCTFLFKKPGRKGAAGRRKRPACDPEPGESGSSSDEGCTVVRPEKKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MAEQLSPGKAVDQVCTFLFKKPGRKGAAGRRKRPACDPEPGESGSSSDEGCTVVRPEKKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 VTHNPMIQKTRDSGKQKAAYGDLSSEEEEENEPESLGVVYKSTRSAKPVGPEDMGATAVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 VTHNPMIQKTRDSGKQKAAYGDLSSEEEEENEPESLGVVYKSTRSAKPVGPEDMGATAVY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 ELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVRK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 GPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 GPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 YGVYEDENYEVGSDDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCYVCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 YGVYEDENYEVGSDDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCYVCD
              250       260       270       280       290       300

              310       320       330       340   
pF1KB9 QQTNGVFNPAKELIAKLEKHRATGEGGASDLPEDPDEDAIPIT
       :::::::::::::::::::::::::::::::::::::::::::
NP_008 QQTNGVFNPAKELIAKLEKHRATGEGGASDLPEDPDEDAIPIT
              310       320       330       340   




343 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:01:55 2016 done: Fri Nov  4 18:01:56 2016
 Total Scan time:  7.200 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]