Result of FASTA (ccds) for pF1KB9634
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9634, 325 aa
  1>>>pF1KB9634 325 - 325 aa - 325 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4633+/-0.000842; mu= -5.5724+/- 0.051
 mean_var=332.0092+/-71.265, 0's: 0 Z-trim(117.9): 16  B-trim: 2174 in 2/53
 Lambda= 0.070388
 statistics sampled from 18729 (18746) to 18729 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.844), E-opt: 0.2 (0.576), width:  16
 Scan time:  3.390

The best scores are:                                      opt bits E(32554)
CCDS8818.1 NR4A1 gene_id:3164|Hs108|chr12          ( 598) 2060 222.2 8.4e-58
CCDS55828.1 NR4A1 gene_id:3164|Hs108|chr12         ( 611) 2060 222.2 8.5e-58
CCDS73471.1 NR4A1 gene_id:3164|Hs108|chr12         ( 652) 2060 222.2   9e-58


>>CCDS8818.1 NR4A1 gene_id:3164|Hs108|chr12               (598 aa)
 initn: 2060 init1: 2060 opt: 2060  Z-score: 1151.2  bits: 222.2 E(32554): 8.4e-58
Smith-Waterman score: 2060; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:1-292)

               10        20        30        40        50        60
pF1KB9 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKVPRSPRWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
CCDS88 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK
              250       260       270       280       290       300

              310       320                                        
pF1KB9 LLLEMERGWPHPIGTCGLPLGSPPS                                   
                                                                   
CCDS88 YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDAS
              310       320       330       340       350       360

>>CCDS55828.1 NR4A1 gene_id:3164|Hs108|chr12              (611 aa)
 initn: 2060 init1: 2060 opt: 2060  Z-score: 1151.1  bits: 222.2 E(32554): 8.5e-58
Smith-Waterman score: 2060; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:14-305)

                            10        20        30        40       
pF1KB9              MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAP
                    :::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MWLAKACWSIQSEMPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAP
               10        20        30        40        50        60

        50        60        70        80        90       100       
pF1KB9 TALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQ
               70        80        90       100       110       120

       110       120       130       140       150       160       
pF1KB9 VYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTY
              130       140       150       160       170       180

       170       180       190       200       210       220       
pF1KB9 EGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMP
              190       200       210       220       230       240

       230       240       250       260       270       280       
pF1KB9 TAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGC
              250       260       270       280       290       300

       290       300       310       320                           
pF1KB9 KGFFKVPRSPRWGLLLEMERGWPHPIGTCGLPLGSPPS                      
       :::::                                                       
CCDS55 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG
              310       320       330       340       350       360

>>CCDS73471.1 NR4A1 gene_id:3164|Hs108|chr12              (652 aa)
 initn: 2060 init1: 2060 opt: 2060  Z-score: 1150.7  bits: 222.2 E(32554): 9e-58
Smith-Waterman score: 2060; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:55-346)

                                             10        20        30
pF1KB9                               MPCIQAQYGTPAPSPGPRDHLASDPLTPEF
                                     ::::::::::::::::::::::::::::::
CCDS73 PPRQPGSFCWALKADGIMWLAKACWSIQSEMPCIQAQYGTPAPSPGPRDHLASDPLTPEF
           30        40        50        60        70        80    

               40        50        60        70        80        90
pF1KB9 IKPTMDLASPEAAPAAPTALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IKPTMDLASPEAAPAAPTALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSS
           90       100       110       120       130       140    

              100       110       120       130       140       150
pF1KB9 SSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQ
          150       160       170       180       190       200    

              160       170       180       190       200       210
pF1KB9 LSPWDGSFGHFSPSQTYEGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LSPWDGSFGHFSPSQTYEGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLF
          210       220       230       240       250       260    

              220       230       240       250       260       270
pF1KB9 PSQATHQLGEGESYSMPTAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PSQATHQLGEGESYSMPTAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVC
          270       280       290       300       310       320    

              280       290       300       310       320          
pF1KB9 GDNASCQHYGVRTCEGCKGFFKVPRSPRWGLLLEMERGWPHPIGTCGLPLGSPPS     
       ::::::::::::::::::::::                                      
CCDS73 GDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAV
          330       340       350       360       370       380    




325 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:53:16 2016 done: Fri Nov  4 17:53:17 2016
 Total Scan time:  3.390 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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