GENSCAN 1.0	Date run:  4-Nov-116	Time: 17:50:10

Sequence gi568815593r:135434980_135635690 : 200711 bp : 47.41% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +    673    782  110  0  2   79   85   103 0.770   7.25
 1.02 Term +   2630   2765  136  2  1  104   49    41 0.441  -0.71
 1.03 PlyA +   5629   5634    6                               1.05

 2.09 PlyA -   7004   6999    6                               1.05
 2.08 Term -  10916  10810  107  0  2   52   41    89 0.298  -0.83
 2.07 Intr -  11551  11467   85  1  1   85  100    32 0.802   3.49
 2.06 Intr -  13250  13133  118  1  1   84   64    84 0.848   6.07
 2.05 Intr -  14970  14479  492  2  0   71   31   490 0.836  33.71
 2.04 Intr -  26655  26512  144  2  0   57   86    84 0.740   4.50
 2.03 Intr -  31505  31140  366  1  0   87   97   293 0.938  24.36
 2.02 Intr -  31849  31696  154  2  1   71   -3   142 0.857   2.53
 2.01 Init -  37372  37234  139  1  1   71   80   142 0.851  12.00
 2.00 Prom -  44063  44024   40                              -6.56

 3.04 PlyA -  45961  45956    6                               1.05
 3.03 Term -  47533  47381  153  1  0  101   41   117 0.746   6.22
 3.02 Intr -  51464  51391   74  0  2   79   -6    52 0.104  -5.97
 3.01 Init -  52041  51999   43  0  1   81  102    49 0.656   6.18
 3.00 Prom -  54660  54621   40                              -4.46

 4.05 PlyA -  55036  55031    6                              -0.45
 4.04 Term -  55794  55617  178  2  1   66   49   186 0.931   9.66
 4.03 Intr -  57493  57389  105  0  0   48   57   107 0.788   2.93
 4.02 Intr -  69392  69308   85  0  1   85   87     4 0.068  -1.12
 4.01 Init -  75137  75062   76  2  1   90   48   101 0.476   7.55
 4.00 Prom -  76434  76395   40                              -3.16

 5.04 PlyA -  79734  79729    6                               1.05
 5.03 Term -  82603  82569   35  2  2  116   48    19 0.383  -1.55
 5.02 Intr -  93880  93773  108  2  0   39  119   102 0.369   8.66
 5.01 Init -  97129  97057   73  1  1   58   36    88 0.288   1.83
 5.00 Prom -  99143  99104   40                              -5.56

 6.02 PlyA -  99169  99164    6                               1.05
 6.01 Sngl - 100711  99998  714  1  0   85   47   978 0.664  89.63
 6.00 Prom - 106577 106538   40                              -5.86

 7.03 PlyA - 107114 107109    6                               1.05
 7.02 Term - 112554 112376  179  1  2  100   47   111 0.874   6.05
 7.01 Init - 115492 115351  142  1  1   88   93     9 0.200   1.76
 7.00 Prom - 119908 119869   40                              -5.56

 8.07 PlyA - 119918 119913    6                               1.05
 8.06 Term - 120794 120691  104  0  2   49   45   126 0.432   2.84
 8.05 Intr - 123800 123720   81  0  0   64   98    49 0.177   3.11
 8.04 Intr - 137432 137350   83  1  2  128   80   -30 0.309  -0.52
 8.03 Intr - 139706 139593  114  1  0  104  101   241 0.981  26.56
 8.02 Intr - 143560 143455  106  2  1   80   73   236 0.998  20.57
 8.01 Init - 143799 143736   64  0  1   88  113   240 0.681  25.81
 8.00 Prom - 147004 146965   40                              -7.76

 9.08 PlyA - 147252 147247    6                               1.05
 9.07 Term - 153670 153430  241  0  1   95   44   133 0.763   5.10
 9.06 Intr - 156642 156562   81  2  0   68   94    51 0.352   2.45
 9.05 Intr - 159892 159792  101  1  2   95   41    41 0.247  -0.99
 9.04 Intr - 170680 170589   92  2  2   34  121    18 0.129  -0.59
 9.03 Intr - 171275 171216   60  0  0   50  121    40 0.016   2.21
 9.02 Intr - 192055 191954  102  2  0  121   98    14 0.476   5.85
 9.01 Init - 197242 197038  205  1  1   76   48    87 0.208   2.51

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 105407 105589  183  1  0   68   54   128 0.839   4.94


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593r:135434980_135635690|GENSCAN_predicted_peptide_1|81_aa
MDTRSHSALGQNHPSLCVCSGLLVAPGPDLEISIALRNYETVTHTPFAFAAPLVAIGMVP
SGTEPAVTHFPVPQAPASTIR

>gi568815593r:135434980_135635690|GENSCAN_predicted_CDS_1|246_bp
atggacacgagatcacacagcgcccttggccagaaccaccccagcctctgtgtctgcagt
gggctgctggtggcaccagggcctgacctggagattagcatcgccctgaggaattatgag
acagtaacgcacactccttttgcatttgcggctcctcttgtggccatcggtatggttcct
tcagggactgagcctgctgtgactcacttcccagtcccccaggccccagcaagcaccatc
agatag

>gi568815593r:135434980_135635690|GENSCAN_predicted_peptide_2|534_aa
MTACKIETTDLVELGPGVLEALIGKKARAGKETVKPMTGQFLQLSPEPRGATGKNKSPGN
DPAAAIATAGAAATAGPGSPCSLQNALIYSHSFLEHHLKAEHPAHRTDPGTQQVLHKRLL
NAGLEQCRNSSYSEIAGASRGVPHRRRRRIQGVEGAGERVQSAIYRQFVGLAGKALALRR
DGAPQTALFATLLRIHSLSNRSAITSQSPVNFAAYLRRERSPLGQREEENAFYIMVVAMW
KRHISLNIRFRMKTHVCKAYVKHVMHERTSSMEKPLTVLRVSLYHPTLGPSAFANVPPRL
QHDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVWVNGL
TLRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDEWE
GISQGQPPPGSGCQQFLFSAQKDDRFAPRASYKEVQLHSQALSIFSIRKTELEPSGWLQG
LVFALDITIPHLLRQPEQAGILTLAFLCFSKNVNLAKLSVRDTGSPRGRLANAP

>gi568815593r:135434980_135635690|GENSCAN_predicted_CDS_2|1605_bp
atgacggcctgcaagattgaaacgactgaccttgttgaattgggacctggcgttttggag
gctctgataggcaagaaggccagagcaggcaaggaaactgtgaagccaatgactggccag
tttctacagctctcgccagagcctagaggtgcaaccggaaagaacaagtcccctggaaac
gaccccgctgctgccatcgccactgctggtgctgctgctacggcaggccctggctctcca
tgcagtctccagaatgccctcatctactcccattcatttcttgagcaccacctgaaggct
gaacacccagcacacaggacagaccctggtactcagcaggtgctgcataagcgtctgtta
aatgcaggactggagcagtgcagaaacagctcttactctgaaatcgcaggcgcttcccgg
ggagtcccgcaccggcgcagacggcggatccagggcgtggagggggccggggaacgggtt
cagagtgccatctaccggcagttcgtcggactggcaggaaaggccttggccctgcggcgg
gatggagccccccagactgcgctgtttgctacgctgctccggatccattcactctccaac
cgctctgcaatcacttcgcaatcaccagtaaactttgccgcctacttgagaagagaaaga
tcccccctggggcagagggaggaggaaaatgctttttatattatggtagtggccatgtgg
aaaagacatatttccctcaacattcgattccgaatgaaaacgcacgtttgtaaagcatat
gtgaaacatgtcatgcacgaaaggacttcttccatggagaagcccctcaccgtcctgcga
gtgagcctgtaccatcccacgctgggcccatctgcctttgccaatgtcccaccacggctg
cagcatgataccagccctctgcttctcggacgggggcaggacgcccacctccagctgcag
ctccctcgcctctcccgccgtcacctgtccctggagccctacctggagaaaggcagtgcc
ctgctggccttctgcctcaaggccctgagccgcaagggctgtgtgtgggtcaatgggctg
acgctgaggtacctggagcaggtccccctgagcaccgtcaacagggtctccttctcaggc
atccagatgctggttcgcgtagaagaaggcacatccctggaggcttttgtctgctatttc
catgtcagcccttcacccctgatttacagacctgaggctgaggaaactgacgaatgggaa
ggcatctcccaggggcagcctccccctggttcaggctgtcaacaatttctgttttctgcc
caaaaggatgatcgttttgcacccagggcaagctacaaggaggtccaacttcactcacag
gccctgagcatcttctccatcaggaaaacagagctggaaccgtcaggctggcttcagggc
ctggtcttcgcacttgatatcactatccctcacctgctcagacagccagagcaggcgggt
attttaaccctcgcattcctctgcttttccaagaatgtgaatcttgccaagctgtccgtg
agagacacgggctcccctcgagggagacttgcaaatgctccataa

>gi568815593r:135434980_135635690|GENSCAN_predicted_peptide_3|89_aa
MGVPSAPPPFFTDEDQLPSFDPPRWDSSTVLEEPVALTQLSRDDDSDDSNSHIDLGSLPL
HPALPLKISVSDQTTSSHPEELITIAGPK

>gi568815593r:135434980_135635690|GENSCAN_predicted_CDS_3|270_bp
atgggtgttccttcagcccctccacccttcttcacggatgaagaccagctgccttccttt
gacccaccaagatgggactcctccacagtcctggaagagcctgtggccttgacccaactg
agcagagatgatgacagtgatgatagtaacagccacattgacctaggcagtcttcccctc
cacccggccttgcctctgaagatctcagtatctgatcagacaaccagttctcaccctgaa
gagctgatcacaattgcaggccccaagtga

>gi568815593r:135434980_135635690|GENSCAN_predicted_peptide_4|147_aa
MTVDTAEFFPSDPISPSNKDDHTAEGYSFFHPPSTGLLQLLLWKCPDSLSTSQLSSSPNQ
QQVLPEHYFMLQPYPQEPSFINHTTMPDGPPIASRAPAACGDGKGPGPELEVEAAWPQLA
KTAPTLASFTGASSSLSLESRGPDIVF

>gi568815593r:135434980_135635690|GENSCAN_predicted_CDS_4|444_bp
atgacggtggacacagctgagttcttcccatcagatcctatcagccccagtaacaaggat
gaccatactgcagaagggtatagctttttccacccaccctcaacagggcttctccagctg
ctgctctggaagtgtcctgacagcctcagcacatcacagctgtccagtagccctaaccag
caacaagtgttgcctgaacactacttcatgctccagccctacccgcaggagcccagtttc
atcaaccacacaaccatgccagatgggccgcccatcgcgtccagagcacctgctgcgtgc
ggcgacgggaaaggccccggccctgaactggaggtggaggcggcttggccacagctggct
aagaccgcgcctacgctggcatcttttactggagcttcttcctcgctcagcctggagtct
agaggtcccgacatcgtcttctga

>gi568815593r:135434980_135635690|GENSCAN_predicted_peptide_5|71_aa
MYDPEHLSRTQSTFPKRNVFNNIVENMYAVAPTSAKQGIKAAKFNTKETNGEDFSTEDAP
GPSSKYSHIRS

>gi568815593r:135434980_135635690|GENSCAN_predicted_CDS_5|216_bp
atgtatgacccagagcacctttccaggacccagagcacctttccaaaaagaaacgtcttt
aacaacatcgttgaaaatatgtatgcagttgctccaacctcagccaagcagggaatcaag
gctgcaaagttcaacaccaaagagaccaatggtgaagattttagcacagaagatgctcct
ggcccgagctccaaatacagccacattaggagttag

>gi568815593r:135434980_135635690|GENSCAN_predicted_peptide_6|237_aa
MPARLETCISDLDCASSSGSDLSGFLTDEEDCARLQQAASASGPPAPARRGAPNISRASE
VPGAQDDEQERRRRRGRTRVRSEALLHSLRRSRRVKANDRERNRMHNLNAALDALRSVLP
SFPDDTKLTKIETLRFAYNYIWALAETLRLADQGLPGGGARERLLPPQCVPCLPGPPSPA
SDAESWGSGAAAASPLSDPSSPAASEDFTYRPGDPVFSFPSLPKDLLHTTPCFIPYH

>gi568815593r:135434980_135635690|GENSCAN_predicted_CDS_6|714_bp
atgccagcccgccttgagacctgcatctccgacctcgactgcgccagcagcagcggcagt
gacctatccggcttcctcaccgacgaggaagactgtgccagactccaacaggcagcctcc
gcttcggggccgcccgcgccggcccgcaggggcgcgcccaatatctcccgggcgtctgag
gttccaggggcacaggacgacgagcaggagaggcggcggcgccgcggccggacgcgggtc
cgctccgaggcgctgctgcactcgctgcgcaggagccggcgcgtcaaggccaacgatcgc
gagcgcaaccgcatgcacaacttgaacgcggccctggacgcactgcgcagcgtgctgccc
tcgttccccgacgacaccaagctcaccaaaatcgagacgctgcgcttcgcctacaactac
atctgggctctggccgagacactgcgcctggcggatcaagggctgcccggaggcggtgcc
cgggagcgcctcctgccgccgcagtgcgtcccctgcctgcccggtcccccaagccccgcc
agcgacgcggagtcctggggctcaggtgccgccgccgcctccccgctctctgaccccagt
agcccagccgcctccgaagacttcacctaccgccccggcgaccctgttttctccttccca
agcctgcccaaagacttgctccacacaacgccctgtttcattccttaccactag

>gi568815593r:135434980_135635690|GENSCAN_predicted_peptide_7|106_aa
MEVRSQVAFLKASSRPLAADAVTQVCPALSHCSVPSHSEEALLFPGPGEEELCMCTHVSM
HVSTHAGMNTWCPCTNPFPPQISLERQLYSKDMNDDGDDDEVKKRD

>gi568815593r:135434980_135635690|GENSCAN_predicted_CDS_7|321_bp
atggaggtgcgctcacaagtggctttccttaaagccagttccaggcctcttgctgctgat
gctgtgacccaggtgtgccccgcactcagccactgctctgtgccctctcactctgaggag
gccctcctcttccctggccctggtgaggaagagctatgtatgtgcacgcatgtatccatg
catgtcagcacccatgcaggcatgaacacctggtgcccatgcacaaatccattccctcca
caaatatcccttgagcgtcaactatactcaaaggatatgaatgatgatggtgatgatgat
gaagtcaagaagagggactga

>gi568815593r:135434980_135635690|GENSCAN_predicted_peptide_8|183_aa
MRLLAAALLLLLLALYTARVDGSKCKCSRKGPKIRYSDVKKLEMKPKYPHCEEKMVIITT
KSVSRYRGQEHCLHPKLQSTKRFIKWYNAWNEKRRKQLLELAFFWRTCIIWAKYKEIYKP
KSRVYPQGRLSVEEIDSCMEMFTEASFTTASYKIPDQYSSKLSQSSKTEKARNFDSQEEP
EET

>gi568815593r:135434980_135635690|GENSCAN_predicted_CDS_8|552_bp
atgaggctcctggcggccgcgctgctcctgctgctgctggcgctgtacaccgcgcgtgtg
gacgggtccaaatgcaagtgctcccggaagggacccaagatccgctacagcgacgtgaag
aagctggaaatgaagccaaagtacccgcactgcgaggagaagatggttatcatcaccacc
aagagcgtgtccaggtaccgaggtcaggagcactgcctgcaccccaagctgcagagcacc
aagcgcttcatcaagtggtacaacgcctggaacgagaagcgcaggaagcagcttctagag
ctagcattcttctggaggacatgcattatttgggcaaaatacaaagaaatatacaagcct
aagtcaagagtctatcctcagggaagactttcagtggaagaaattgatagctgcatggag
atgttcactgaagcatcatttaccacagcatcctacaaaatacctgaccagtactcctca
aaactgtcacagtcatcaaaaacagagaaagccagaaacttcgacagccaagaggagcct
gaggagacatga

>gi568815593r:135434980_135635690|GENSCAN_predicted_peptide_9|293_aa
MALKTKPTHCSTEDRIFYDPVILLTHDVTMDRASKGCCKRQSGHMCCHTEVSLTHLFHPH
PQEAKNHIDGLLSPQAPTSCAKPGHKWGYFYGSVARRQPAGQDSLATQTTSLTMQTFYVE
EKEWPNSQQESQAVVEVVKKMLNVLISEKQVPKEDKKAYLSLCVKVLFMLSNAMHRRDLG
TLQAVMPLFEEKQWELRRLEQALQKKAGYMEHSRSISTTCFMKAFPIPNLDGTALQPPIW
NPRIRNSFEVFSQPAGKGLSGLQTSCRASGPQPPQPCNPGTEQALSKGSTWCL

>gi568815593r:135434980_135635690|GENSCAN_predicted_CDS_9|882_bp
atggccctcaagacaaagcctacgcactgtagtacagaagacagaatcttctatgaccca
gtcatcttgctaactcatgatgtcaccatggatcgggcctccaaaggatgctgcaaaaga
caatcaggccacatgtgttgtcacactgaagttagccttacacacctctttcatcctcat
cctcaggaggccaagaaccacatagatgggctcctttctccccaggctcccacctcctgt
gccaagccaggccataagtggggctacttctatgggtctgttgcaagaaggcaaccagca
ggccaagatagccttgcaacccagaccacctccctgacaatgcagacattttatgtggaa
gaaaaagaatggccaaattcccagcaagaaagtcaggcagtggtagaggtagtgaagaag
atgttaaatgttctcatttctgaaaagcaagtacctaaggaagacaaaaaggcttacctg
agcctgtgtgtgaaggtgctcttcatgctgtcaaatgctatgcataggagggatctgggc
accctccaagcagtgatgccgctgtttgaggaaaagcaatgggagctgcgtaggctggag
caagcgctgcagaagaaagcaggatacatggaacactccaggtctatttccactacctgc
ttcatgaaagcattcccaatccccaacctggatgggactgccttacagccccccatctgg
aatcctcgcatccgtaactcatttgaagtattctctcagcctgctggcaagggcctctct
ggcctgcagacatcctgccgagcctctggcccgcagcccccgcagccctgcaaccccggc
acagagcaggcactcagcaagggctcaacttggtgtttatag