GENSCAN 1.0	Date run:  4-Nov-116	Time: 17:30:07

Sequence gi568815592r:139273135_139473944 : 200810 bp : 41.03% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   6718   6820  103  0  1   58   44   138 0.243   6.85
 1.02 Intr +   9970  10032   63  2  0   88  131    -8 0.092   1.27
 1.03 Term +  13711  13724   14  2  2  125   33    35 0.088  -0.91
 1.04 PlyA +  13830  13835    6                               1.05

 2.06 PlyA -  14787  14782    6                               1.05
 2.05 Term -  15779  15334  446  0  2   39   33   580 0.156  42.01
 2.04 Intr -  19327  19182  146  0  2   20   42   142 0.148   1.81
 2.03 Intr -  23551  23471   81  0  0   60   84    92 0.297   3.83
 2.02 Intr -  24102  23920  183  2  0   22   45   142 0.306   1.28
 2.01 Init -  25893  25769  125  0  2   50   49   153 0.624   7.29
 2.00 Prom -  32398  32359   40                              -6.85

 3.00 Prom +  36651  36690   40                              -3.65
 3.01 Init +  47630  47851  222  1  0   74   22   134 0.508   4.00
 3.02 Term +  57242  57463  222  1  0   54   48   165 0.851   5.03
 3.03 PlyA +  57926  57931    6                               1.05

 4.00 Prom +  59982  60021   40                              -4.65
 4.01 Init +  63646  63682   37  0  1   83  102    30 0.476   4.26
 4.02 Intr +  70950  71098  149  1  2   86   30    87 0.027   1.73
 4.03 Intr +  76395  76542  148  2  1    3   80   120 0.035   1.59
 4.04 Term +  82783  82955  173  2  2   83   49   159 0.740   8.51
 4.05 PlyA +  83965  83970    6                               1.05

 5.00 Prom +  85743  85782   40                              -5.25
 5.01 Sngl +  88576  88989  414  0  0   88   45   165 0.667   8.25
 5.02 PlyA +  89664  89669    6                               1.05

 6.08 PlyA -  90733  90728    6                               1.05
 6.07 Term - 100818  99998  821  1  2  115   41  1016 0.849  91.88
 6.06 Intr - 101118 100923  196  0  1    3   22    57 0.354 -11.33
 6.05 Intr - 101422 101279  144  1  0    4  121   306 0.755  25.06
 6.04 Intr - 101676 101474  203  1  2   57   40   117 0.759   1.88
 6.03 Intr - 104414 104294  121  2  1   41   93    79 0.490   2.85
 6.02 Intr - 105927 105826  102  0  0   81  109    95 0.777  10.35
 6.01 Init - 110163 110125   39  0  0  108  100    12 0.513   2.74
 6.00 Prom - 121346 121307   40                              -1.15

 7.02 PlyA - 122641 122636    6                               1.05
 7.01 Sngl - 130157 129939  219  2  0   59   54   154 0.423   4.01
 7.00 Prom - 132906 132867   40                              -4.75

 8.00 Prom + 135597 135636   40                              -6.85
 8.01 Sngl + 135689 135874  186  1  0   75   45   211 0.939  10.33
 8.02 PlyA + 136461 136466    6                               1.05

 9.00 Prom + 138138 138177   40                              -3.75
 9.01 Init + 149579 149743  165  1  0   70   45    86 0.365   2.18
 9.02 Intr + 153715 153856  142  0  1   65  -22   148 0.535   0.51
 9.03 Intr + 153919 154095  177  2  0  114   87    46 0.542   6.07
 9.04 Term + 154818 154999  182  1  2   39   55   125 0.559   1.09
 9.05 PlyA + 155353 155358    6                               1.05

10.00 Prom + 157338 157377   40                              -9.25
10.01 Init + 163284 163326   43  2  1   98   82    76 0.952   8.64
10.02 Term + 163668 163816  149  1  2   46   48   135 0.928   2.38
10.03 PlyA + 166035 166040    6                               1.05

11.03 PlyA - 166952 166947    6                               1.05
11.02 Term - 170742 170662   81  0  0   67   42   123 0.689   2.31
11.01 Intr - 199461 199393   69  0  0  101   87    76 0.953   7.26

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  15765  15334  432  0  0   99   33   564 0.827  48.03


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592r:139273135_139473944|GENSCAN_predicted_peptide_1|59_aa
MLSVVGSLHESGTTCVADTALLHKAVVTGTVLLEDAKGKVTLPTREIFKYSPNCSDGTV

>gi568815592r:139273135_139473944|GENSCAN_predicted_CDS_1|180_bp
atgctcagcgtggtaggaagtctacatgaaagtggaaccacctgtgtagcagacacagcg
ctgttgcataaggctgtggtcactggcacagttttattggaagatgccaaggggaaagtg
actttacccacgagagagatttttaaatattcccccaactgctccgatgggaccgtctag

>gi568815592r:139273135_139473944|GENSCAN_predicted_peptide_2|326_aa
MVPASPSGESFRKFPLMVEGEGEQASHGKREEEGENMEEGTSKEEEEKRQKKGSSNVREA
RRIESINPKPQRMRTRTQYIVVNDSTGSVLHRDELDVSGTGKQIPEDCSLKKLNQKGSEL
SDMRLRGGQGNLTLIKLVQEEEEKEDESSTTLEITQEVRKTDLYPKRTTMVKDCICNGDT
TPKMEANHSEQLSAERQSTPPGDSSSLPSHNGLEKEDGQDSPTPVQPPEKEASVHPDISE
ELNRQLEDIINTYGSAASTAGKEGSARASEQPENAESPDNEDGDCEETTEEAGREPVASG
EPPTVKEPVSNKEQKLEKKILKGLGK

>gi568815592r:139273135_139473944|GENSCAN_predicted_CDS_2|981_bp
atggtgccagcatctccttctggggagagtttcaggaagtttccactcatggtggaaggt
gaaggggagcaggcatcacatggcaagagggaggaagaaggagagaacatggaggaaggt
accagtaaagaagaagaagaaaaaaggcagaaaaagggaagctctaatgttagggaagcc
agaagaattgaatccataaaccccaaaccacaacggatgaggactagaacacaatacata
gtggtaaatgattcaacaggaagtgtgcttcacagggatgagttggatgtaagtgggaca
ggcaagcagatacctgaggattgttctctgaagaagcttaaccagaaaggctctgaactg
agcgatatgaggctcagaggaggacaaggaaacctgacactaattaagctagtgcaagaa
gaagaagaaaaagaagatgaatcttccaccacactggagataacccaagaagtaagaaaa
actgatctctacccaaaaaggacaacaatggtgaaagactgcatttgcaacggggatact
actcccaagatggaggctaatcactctgaacagctctcagcggaacgacagtcaacacct
ccaggtgacagttcatcattacccagtcacaatggcctggagaaggaagatggccaggat
tctccaaccccagtccaaccaccagagaaagaggcaagtgtgcaccccgatatctctgaa
gagctgaatcgacagctggaagacatcattaacacttatgggtctgctgccagcacagca
gggaaagagggctctgccagggccagtgagcagcctgagaatgcagaatcacctgacaac
gaggatggggactgtgaggaaacaactgaagaggctggaagagaacccgttgcttctgga
gagccacccactgtcaaagagcccgtcagcaataaggagcaaaaattggaaaagaaaatc
ctaaaaggattaggcaagtag

>gi568815592r:139273135_139473944|GENSCAN_predicted_peptide_3|147_aa
MILTQQGDFRVYISPMLHRHKSLGNTSKKALLPFPTFSFFLPEADVFVRATVAIFHSKAT
VKMKAMGLGQHSREEFVEPISTLHSLIGSDIVQPPNLSQAGMLTFADFWEKVCFPAEQEA
SWNGMPSAAALFCFHEEPKTESGTGEV

>gi568815592r:139273135_139473944|GENSCAN_predicted_CDS_3|444_bp
atgattctcactcaacaaggtgacttcagagtctatatctctcccatgctacataggcac
aagtcattgggtaacacttctaagaaagctcttctgccctttcccactttctccttcttc
ttacctgaagcagatgtatttgttagagctacagtggccatattccactctaaggcaact
gtgaagatgaaagccatgggcttgggacagcacagcagagaagaatttgtggaaccaatc
tctacgttgcattctctgattggttcagacattgtccagccacccaatctgagtcaagca
ggtatgctgacattcgctgatttctgggaaaaggtctgcttcccagctgaacaagaagcc
tcatggaatggaatgcctagtgcagctgccctattttgcttccatgaagagccaaagaca
gagagcggcacaggggaagtctga

>gi568815592r:139273135_139473944|GENSCAN_predicted_peptide_4|168_aa
MNLAVAAVAVRQGSCTASWNITGAAGELAPSSYWGYLPCMWRARAWTCLTQPPPGFAPPL
ALWGSTPVLKEEGSVYVSPKTFSVGTGSSSSSSEFGMIDGGGWSGSNLLTQTHCILDRAF
TTCLSPARQNTRMHKFYEAGLLPTDRQQGTTDAKDAGQAGPSGLRKAT

>gi568815592r:139273135_139473944|GENSCAN_predicted_CDS_4|507_bp
atgaatttggcagtggctgctgtagccgtgaggcaaggcagctgcactgcttcctggaat
attaccggagcagccggagaactggcccccagctcctactggggttatttgccctgcatg
tggagagccagagcatggacctgcctgacccagcccccacctggctttgctccaccactt
gccctgtgggggtcgacgccagttctgaaagaagaaggaagtgtttatgtgagtcctaag
acattctcagttggaactggaagtagttcttccagttctgagtttggcatgattgatgga
ggtggttggtctggttctaacctgttaacacaaacccactgcatcttggaccgcgctttt
actacttgcctgagtccagcaagacagaacactcgcatgcacaagttttatgaagcgggt
ttattacccacagataggcagcaaggcacaacagatgccaaggatgcagggcaagctggt
ccctcaggacttaggaaagctacctag

>gi568815592r:139273135_139473944|GENSCAN_predicted_peptide_5|137_aa
MAAQIHHFSWPELVQGLCSIAYNTWGFHREDATDAGTRQLDPGSTWRQSIVAITWEPWLL
LLVDAPTHGFSLWHGFLTAWPCQGSWTSYIVAQSSRGVCPKRTKGKLCGVFLFSLESYTG
RESISEPQIQGRGLMLF

>gi568815592r:139273135_139473944|GENSCAN_predicted_CDS_5|414_bp
atggctgcccagattcaccatttcagttggcctgagctagtgcaaggactttgctccata
gcgtataatacctgggggttccacagggaagatgctacagatgctggcactcgacagctg
gaccctggaagcacctggaggcagtcgatagtggctatcacctgggaaccttggctgctg
ctgctggtggacgcacctacacatggcttttccctgtggcatggcttccttacagcatgg
ccgtgtcagggtagctggacttcttatattgtagcccagagctccagaggcgtgtgtccc
aagagaaccaaggggaagctatgcggtgttttcttattcagtcttgaaagttacacagga
agagagtccataagtgaacctcagattcagggaagaggcctaatgctgttttga

>gi568815592r:139273135_139473944|GENSCAN_predicted_peptide_6|541_aa
MVMPVISVLWEAKVLAKARDSPLKTCFSQKFTPMGTFVHYSAVSDAQLWEMNTTIQCCEG
HRQITCSLTQVHGINPGYTELLGALGYSSAARAAGGGDAAPGPGPGCSRCSGIRVLAPPA
LEALAPPFRNAYINCGQSPKKHSSLLAAAGRSCRARPLRDLGADIATAKRFARQEGPLYV
LLSRSWTRRARPRSSEQKSQKRKGYGALPLLGHFGEQRGCGLGSPRPIAGEGAVCAASGC
VMSGSSSVVASPGAQAVSGILGVVVRSRRLEMADHMMAMNHGRFPDGTNGLHHHPAHRMG
MGQFPSPHHHQQQQPQHAFNALMGEHIHYGAGNMNATSGIRHAMGPGTVNGGHPPSALAP
AARFNNSQFMGPPVASQGGSLPASMQLQKLNNQYFNHHPYPHNHYMPDLHPAAGHQMNGT
NQHFRDCNPKHSGGSSTPGGSGGSSTPGGSGSSSGGGAGSSNSGGGSGSGNMPASVAHVP
AAMLPPNVIDTDFIDEEVLMSLVIEMGLDRIKELPELWLGQNEFDFMTDFVCKQQPSRVS
C

>gi568815592r:139273135_139473944|GENSCAN_predicted_CDS_6|1626_bp
atggtcatgcctgtaatctcagtgctttgggaggccaaggttttagctaaagccagagac
tcacctctaaaaacttgtttcagtcaaaagttcacaccaatggggacctttgtccattac
tcagcagtcagtgatgcccagctctgggaaatgaatacaaccattcagtgctgtgagggc
cacagacagatcacttgctcgctcacccaggttcacgggataaaccctggttatacggaa
cttctgggagccctgggttactcctctgcagcacgtgccgcgggcggcggggacgcggct
ccgggacccggtccagggtgttcgcggtgttccggaatccgcgtcttggcgccgcccgcc
ctggaggctctcgctccgcctttccgaaatgcctatattaactgtggccaaagccctaag
aaacacagctcattgttggcagctgccgggcggtcctgccgagctcggccgctgcgagac
ctcggcgccgacatcgcgacagcgaagcgctttgcacgccaggaaggtcccctctatgtg
ctgctgagccggtcctggacgcgacgagcccgccctcggtcttcggagcagaaatcgcaa
aaacggaagggctacggggcacttcctttattaggccacttcggggagcaaagggggtgt
gggctcgggtccccccgcccgatcgcaggggaaggggctgtttgtgcagcgtccggctgt
gttatgagtggtagctcttccgtggtggctagcccgggtgcacaggctgttagtgggatc
ttgggggtggtggttcgcagccgacgactggaaatggcagaccatatgatggccatgaac
cacgggcgcttccccgacggcaccaatgggctgcaccatcaccctgcccaccgcatgggc
atggggcagttcccgagcccccatcaccaccagcagcagcagccccagcacgccttcaac
gccctaatgggcgagcacatacactacggcgcgggcaacatgaatgccacgagcggcatc
aggcatgcgatggggccggggactgtgaacggagggcaccccccgagcgcgctggccccc
gcggccaggtttaacaactcccagttcatgggtcccccggtggccagccagggaggctcc
ctgccggccagcatgcagctgcagaagctcaacaaccagtatttcaaccatcacccctac
ccccacaaccactacatgccggatttgcaccctgctgcaggccaccagatgaacgggaca
aaccagcacttccgagattgcaaccccaagcacagcggcggcagcagcacccccggcggc
tcgggcggcagcagcacccccggcggctctggcagcagctcgggcggcggcgcgggcagc
agcaacagcggcggcggcagcggcagcggcaacatgcccgcctccgtggcccacgtcccc
gctgcaatgctgccgcccaatgtcatagacactgatttcatcgacgaggaagttcttatg
tccttggtgatagaaatgggtttggaccgcatcaaggagctgcccgaactctggctgggg
caaaacgagtttgattttatgacggacttcgtgtgcaaacagcagcccagcagagtgagc
tgttga

>gi568815592r:139273135_139473944|GENSCAN_predicted_peptide_7|72_aa
MHSIKCSKIVTDVSHSSHSSNRSVLRGREKPQASKRQWEKSITCSLKVLFLGLVTHQTCC
YGVSMPRVSFPG

>gi568815592r:139273135_139473944|GENSCAN_predicted_CDS_7|219_bp
atgcacagcattaagtgctcaaagattgtgaccgatgttagtcattcttcccactcgtcc
aacaggagtgttcttagaggacgagagaaaccacaggccagcaagaggcaatgggagaag
tccatcacatgctctctaaaggtcctgttcctgggcctggttacacatcagacctgttgt
tacggtgtctctatgccaagggtgtcatttcctggctga

>gi568815592r:139273135_139473944|GENSCAN_predicted_peptide_8|61_aa
MQEEKVNHTAETLLEAGEFFFGTTLDCSHFDLEKTHRRKSPRGNVECGSFEKGSEREKGT
S

>gi568815592r:139273135_139473944|GENSCAN_predicted_CDS_8|186_bp
atgcaggaagaaaaggtcaatcatactgctgagactttgctggaagctggtgaatttttc
tttggtacaactttggactgtagccactttgatttagagaagacccatcgtcggaaaagc
cctcgtgggaacgtggaatgcgggagctttgagaaggggtctgaaagagaaaagggaact
agctag

>gi568815592r:139273135_139473944|GENSCAN_predicted_peptide_9|221_aa
MDGTLLRETPTTGPGEERGRPHGGFRCSSGWKSQKRMYQRVVSTHTPSVGRGAAEGRVAF
QFESRPEMFERTKESSPMSLDVQNLPIADPDWQRSCHTHAEPESRCLSKTQIGCPLFSSG
KPYPPPLKTGVICPAALHFYSTFGTSHTKTCVLVTCQPSQPGCLAISHRRGGAPGCSRRP
KRAKEPKQIGETEFQPRSYLLNTQGPMVATHTNALIHNMKD

>gi568815592r:139273135_139473944|GENSCAN_predicted_CDS_9|666_bp
atggatggaactctgctaagggaaacgccaacaacaggcccaggggaagagagaggaaga
ccccatggaggattcagatgttcttctgggtggaagagccaaaagcgaatgtaccagcgt
gttgttagcacacacacacccagcgtgggaagaggagcagctgagggcagagttgctttt
caatttgaaagcagacctgaaatgttcgaaagaaccaaggagtcaagtccaatgtccctg
gacgttcaaaacctccccatcgccgaccccgattggcagagaagctgccacacccatgca
gagcccgaatcccgctgtctttccaagacccagatagggtgccctctcttctcttctggg
aaaccttatccccctcccctgaagactggagttatctgtcctgctgcccttcacttttat
tcaacgtttggcacgtcccatactaagacgtgtgttttagttacctgccagccttcccaa
ccaggatgtttggctatcagccacagaagaggaggggccccagggtgcagcagaagaccc
aagagagccaaagaacccaaacagataggtgaaacagagttccaaccaagaagttaccta
ctgaacactcagggacccatggttgctacacatactaatgctctaattcataatatgaag
gactga

>gi568815592r:139273135_139473944|GENSCAN_predicted_peptide_10|63_aa
MGMQAAVAIKLVLTDLQMPQATEVFGWTPRLCRRTKVLLFADCVGSRSHDDDDDDDDHDH
AFS

>gi568815592r:139273135_139473944|GENSCAN_predicted_CDS_10|192_bp
atggggatgcaagcagctgtggccatcaaactggttctaacagatctgcagatgcctcag
gccacagaggtatttggctggactccacgtctgtgtagaaggacaaaagtcttgctattt
gcagattgtgtgggtagcaggagtcatgacgatgatgatgatgatgacgatcatgatcat
gcttttagttga

>gi568815592r:139273135_139473944|GENSCAN_predicted_peptide_11|49_aa
LEIKPFWLPIVGEVETVNGVCNEHLKFVELNQRETCSKIRIQMNQVEAS

>gi568815592r:139273135_139473944|GENSCAN_predicted_CDS_11|150_bp
ctagaaatcaagcctttctggcttccgattgttggagaagtggaaacagttaatggagta
tgcaatgagcatttaaagtttgtggaactaaaccagagggagacctgcagcaaaatccga
attcaaatgaaccaggtggaagcaagttag