FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9578, 237 aa 1>>>pF1KB9578 237 - 237 aa - 237 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.1527+/-0.000316; mu= 3.3096+/- 0.020 mean_var=212.7831+/-43.550, 0's: 0 Z-trim(123.3): 69 B-trim: 547 in 1/55 Lambda= 0.087924 statistics sampled from 42655 (42750) to 42655 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.501), width: 16 Scan time: 7.580 The best scores are: opt bits E(85289) NP_004307 (OMIM: 100790,209880) achaete-scute homo ( 236) 1549 208.0 1.1e-53 NP_005161 (OMIM: 601886) achaete-scute homolog 2 [ ( 193) 423 65.1 9.8e-11 NP_982260 (OMIM: 609155) achaete-scute homolog 4 [ ( 173) 254 43.6 0.00026 NP_065697 (OMIM: 609154) achaete-scute homolog 3 [ ( 181) 222 39.6 0.0044 NP_068808 (OMIM: 602407) heart- and neural crest d ( 217) 215 38.8 0.0094 >>NP_004307 (OMIM: 100790,209880) achaete-scute homolog (236 aa) initn: 1309 init1: 1309 opt: 1549 Z-score: 1084.5 bits: 208.0 E(85289): 1.1e-53 Smith-Waterman score: 1549; 99.6% identity (99.6% similar) in 237 aa overlap (1-237:1-236) 10 20 30 40 50 60 pF1KB9 MESSAKMESGGAGQQPQPQPQQPFLPPAACFFATAAAAAAAAAAAAAQSAQQQQQQQQQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MESSAKMESGGAGQQPQPQPQQPFLPPAACFFATAAAAAAAAAAAAAQSAQQQQQQQQQQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 QQQAPQLRPAADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRRLNFSGFGYSLPQQQPAA :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 QQ-APQLRPAADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRRLNFSGFGYSLPQQQPAA 70 80 90 100 110 130 140 150 160 170 180 pF1KB9 VARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLDEHDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 VARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLDEHDA 120 130 140 150 160 170 190 200 210 220 230 pF1KB9 VSAAFQAGVLSPTISPNYSNDLNSMAGSPVSSYSSDEGSYDPLSPEEQELLDFTNWF ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 VSAAFQAGVLSPTISPNYSNDLNSMAGSPVSSYSSDEGSYDPLSPEEQELLDFTNWF 180 190 200 210 220 230 >>NP_005161 (OMIM: 601886) achaete-scute homolog 2 [Homo (193 aa) initn: 517 init1: 350 opt: 423 Z-score: 313.7 bits: 65.1 E(85289): 9.8e-11 Smith-Waterman score: 472; 52.0% identity (68.0% similar) in 175 aa overlap (89-237:23-190) 60 70 80 90 100 110 pF1KB9 QQQQQAPQLRPAADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRR----LNFSGFGYSLP :.: .::::.::.:: .: : NP_005 MDGGTLPRSAPPAPPVPVGCAARRRPASPELLRCSRRRRPATAETGGG---- 10 20 30 40 120 130 140 150 160 170 pF1KB9 QQQPAAVARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQL ::::::::::::::::::::: .::.:::.:.:.::.:::::::::::::::::.: NP_005 ---AAAVARRNERERNRVKLVNLGFQALRQHVPHGGASKKLSKVETLRSAVEYIRALQRL 50 60 70 80 90 100 180 190 200 210 pF1KB9 LDEHDAVSAAFQAGV----LSPTI------------SPNYSNDL-----NSMAGSPVSSY : ::::: :. .:. . :. ::. ... .: ::: :.: NP_005 LAEHDAVRNALAGGLRPQAVRPSAPRGPPGTTPVAASPSRASSSPGRGGSSEPGSPRSAY 110 120 130 140 150 160 220 230 pF1KB9 SSDE-GSYDPLSPEEQELLDFTNWF :::. : ::: :.:::::..:. NP_005 SSDDSGCEGALSPAERELLDFSSWLGGY 170 180 190 >>NP_982260 (OMIM: 609155) achaete-scute homolog 4 [Homo (173 aa) initn: 234 init1: 234 opt: 254 Z-score: 198.4 bits: 43.6 E(85289): 0.00026 Smith-Waterman score: 254; 38.9% identity (60.5% similar) in 162 aa overlap (67-218:17-171) 40 50 60 70 80 90 pF1KB9 AAAAAAAAAAAQSAQQQQQQQQQQQQQAPQLRPAADGQPSG--GGHKSAPKQVK-RQRSS :: : : :. : . : .: : .. NP_982 MMETRKPAERLALPYSLRTAPLGVPGTLPGLPRRDPLRVALRLDAA 10 20 30 40 100 110 120 130 140 pF1KB9 SPELMR--CKRRLNFSGFGY-SLPQQ---QPAAVARRNERERNRVKLVNLGFATLREHVP : : : : :. : .: . .:: . .::::::.::. :: :.: ::.:.: NP_982 CWEWARSGCAR-----GWQYLPVPLDSAFEPAFLRKRNERERQRVRCVNEGYARLRDHLP 50 60 70 80 90 100 150 160 170 180 190 200 pF1KB9 NGAANKKMSKVETLRSAVEYIRALQQLLDEHDAVSAAFQAGVLSPTISPNYSNDLNSMAG :.:..:::::::.:..::. ::.:: :..: . ::.. : . ..: .: :. NP_982 RELADKRLSKVETLRAAIDYIKHLQELL-ERQAWGLEGAAGAV-PQRRAECNSDGESKAS 110 120 130 140 150 210 220 230 pF1KB9 S-PVSSYSSDEGSYDPLSPEEQELLDFTNWF : : : .:: NP_982 SAPSPSSEPEEGGS 160 170 >>NP_065697 (OMIM: 609154) achaete-scute homolog 3 [Homo (181 aa) initn: 214 init1: 214 opt: 222 Z-score: 176.3 bits: 39.6 E(85289): 0.0044 Smith-Waterman score: 222; 43.3% identity (63.9% similar) in 97 aa overlap (105-201:82-175) 80 90 100 110 120 130 pF1KB9 PSGGGHKSAPKQVKRQRSSSPELMRCKRRLNFSGFGYSLPQQQPAAVARRNERERNRVKL :. : :: :: . .::::::.::: NP_065 ELPRLPFPSDSLILGNYSEPCPFSFPMPYPNYRGCEYSY---GPAFTRKRNERERQRVKC 60 70 80 90 100 140 150 160 170 180 190 pF1KB9 VNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLDEHDAVSAAFQAGVLSPTI :: :.: ::.:.:. .:..:::::::.:..:: ::.:: : . . : : NP_065 VNEGYAQLRHHLPEEYLEKRLSKVETLRAAIKYINYLQSLLYPDKAETKNNPGKVSSMIA 110 120 130 140 150 160 200 210 220 230 pF1KB9 SPNYSNDLNSMAGSPVSSYSSDEGSYDPLSPEEQELLDFTNWF . .. : NP_065 TTSHHADPMFRIV 170 180 >>NP_068808 (OMIM: 602407) heart- and neural crest deriv (217 aa) initn: 219 init1: 158 opt: 215 Z-score: 170.4 bits: 38.8 E(85289): 0.0094 Smith-Waterman score: 244; 31.7% identity (56.1% similar) in 205 aa overlap (20-212:8-195) 10 20 30 40 50 60 pF1KB9 MESSAKMESGGAGQQPQPQPQQPFLPPAACFFATAAAAAAAAAAAAAQSAQQQQQQQQQQ :..: . . ::.::::::::::. . . NP_068 MSLVGGFPHHPVVHHEGYPFAAAAAAAAAAAAS------------RCS 10 20 30 70 80 90 100 110 120 pF1KB9 QQQAPQLRPAADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRRLNFSGFGYSLPQQQPAA ... : .. :.: . .: . . : ::: :. : .: : : . NP_068 HEENPYFHGWLIGHP-----EMSPPDYSMALSYSPEYASGAAGLDHSHYGGVPPGAGPPG 40 50 60 70 80 90 130 140 150 160 170 pF1KB9 ------VARR---NERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRAL : :: :..:: :.. .: .:: ::: .:: :. :.::..::: :. :: : NP_068 LGGPRPVKRRGTANRKERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYL 100 110 120 130 140 150 180 190 200 210 220 pF1KB9 QQLL--DEHDAVSAAFQAGVLSPTISPN-YSNDLNSMAGSPVSSYSSDEGSYDPLSPEEQ ..:: :.... . ::.: . . .. . ...:: . : ::: NP_068 MDLLAKDDQNGEAEAFKAEIKKTDVKEEKRKKELNEILKSTVSSNDKKTKGRTGWPQHVW 160 170 180 190 200 210 230 pF1KB9 ELLDFTNWF NP_068 ALELKQ 237 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 17:27:28 2016 done: Fri Nov 4 17:27:29 2016 Total Scan time: 7.580 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]