FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9578, 237 aa 1>>>pF1KB9578 237 - 237 aa - 237 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.8478+/-0.000829; mu= 5.3570+/- 0.050 mean_var=203.5080+/-40.015, 0's: 0 Z-trim(115.5): 41 B-trim: 126 in 1/52 Lambda= 0.089905 statistics sampled from 15995 (16035) to 15995 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.493), width: 16 Scan time: 2.520 The best scores are: opt bits E(32554) CCDS31886.1 ASCL1 gene_id:429|Hs108|chr12 ( 236) 1549 212.3 2.3e-55 CCDS7732.1 ASCL2 gene_id:430|Hs108|chr11 ( 193) 423 66.1 1.8e-11 >>CCDS31886.1 ASCL1 gene_id:429|Hs108|chr12 (236 aa) initn: 1309 init1: 1309 opt: 1549 Z-score: 1107.5 bits: 212.3 E(32554): 2.3e-55 Smith-Waterman score: 1549; 99.6% identity (99.6% similar) in 237 aa overlap (1-237:1-236) 10 20 30 40 50 60 pF1KB9 MESSAKMESGGAGQQPQPQPQQPFLPPAACFFATAAAAAAAAAAAAAQSAQQQQQQQQQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MESSAKMESGGAGQQPQPQPQQPFLPPAACFFATAAAAAAAAAAAAAQSAQQQQQQQQQQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 QQQAPQLRPAADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRRLNFSGFGYSLPQQQPAA :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 QQ-APQLRPAADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRRLNFSGFGYSLPQQQPAA 70 80 90 100 110 130 140 150 160 170 180 pF1KB9 VARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLDEHDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 VARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLDEHDA 120 130 140 150 160 170 190 200 210 220 230 pF1KB9 VSAAFQAGVLSPTISPNYSNDLNSMAGSPVSSYSSDEGSYDPLSPEEQELLDFTNWF ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 VSAAFQAGVLSPTISPNYSNDLNSMAGSPVSSYSSDEGSYDPLSPEEQELLDFTNWF 180 190 200 210 220 230 >>CCDS7732.1 ASCL2 gene_id:430|Hs108|chr11 (193 aa) initn: 517 init1: 350 opt: 423 Z-score: 319.3 bits: 66.1 E(32554): 1.8e-11 Smith-Waterman score: 472; 52.0% identity (68.0% similar) in 175 aa overlap (89-237:23-190) 60 70 80 90 100 110 pF1KB9 QQQQQAPQLRPAADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRR----LNFSGFGYSLP :.: .::::.::.:: .: : CCDS77 MDGGTLPRSAPPAPPVPVGCAARRRPASPELLRCSRRRRPATAETGGG---- 10 20 30 40 120 130 140 150 160 170 pF1KB9 QQQPAAVARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQL ::::::::::::::::::::: .::.:::.:.:.::.:::::::::::::::::.: CCDS77 ---AAAVARRNERERNRVKLVNLGFQALRQHVPHGGASKKLSKVETLRSAVEYIRALQRL 50 60 70 80 90 100 180 190 200 210 pF1KB9 LDEHDAVSAAFQAGV----LSPTI------------SPNYSNDL-----NSMAGSPVSSY : ::::: :. .:. . :. ::. ... .: ::: :.: CCDS77 LAEHDAVRNALAGGLRPQAVRPSAPRGPPGTTPVAASPSRASSSPGRGGSSEPGSPRSAY 110 120 130 140 150 160 220 230 pF1KB9 SSDE-GSYDPLSPEEQELLDFTNWF :::. : ::: :.:::::..:. CCDS77 SSDDSGCEGALSPAERELLDFSSWLGGY 170 180 190 237 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 17:27:27 2016 done: Fri Nov 4 17:27:28 2016 Total Scan time: 2.520 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]