GENSCAN 1.0	Date run:  4-Nov-116	Time: 17:25:32

Sequence gi568815590f:38687583_38948020 : 260438 bp : 44.15% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.06 PlyA -   2401   2396    6                               1.05
 1.05 Term -   8541   8351  191  1  2   44   48   133 0.175   2.51
 1.04 Intr -  13432  13372   61  1  1   56   91    60 0.150   1.41
 1.03 Intr -  22896  22855   42  0  0   94  105    20 0.300   2.74
 1.02 Intr -  23491  23371  121  0  1   50   95    59 0.146   3.30
 1.01 Init -  32484  32399   86  0  2   88   48    74 0.045   2.18
 1.00 Prom -  35958  35919   40                              -2.06

 2.05 PlyA -  36084  36079    6                              -3.44
 2.04 Term -  36483  36362  122  1  2  119   47   137 0.954  11.34
 2.03 Intr -  47218  47100  119  0  2   87   50    47 0.043   0.91
 2.02 Intr -  51278  51148  131  2  2   60   33    86 0.122  -0.21
 2.01 Init -  55334  55332    3  2  0  113   81     0 0.248   1.80
 2.00 Prom -  94923  94884   40                              -2.46

 3.00 Prom +  95542  95581   40                              -5.06
 3.01 Init +  97845  97920   76  2  1   48   83    53 0.751   2.05
 3.02 Intr +  99975 100228  254  1  2   83   18   269 0.491  16.55
 3.03 Intr + 100505 100668  164  1  2   14   61   162 0.952   4.87
 3.04 Intr + 101122 101237  116  1  2   85   98    54 0.920   6.19
 3.05 Intr + 131940 133053 1114  1  1   81   92   681 0.976  56.59
 3.06 Intr + 137726 137786   61  2  1  115  100    40 0.988   6.64
 3.07 Intr + 139586 139793  208  1  1   92   80   146 0.848  12.85
 3.08 Intr + 143543 143595   53  0  2   53   89    60 0.701   1.23
 3.09 Intr + 148580 148705  126  1  0   95   83   173 0.997  18.38
 3.10 Intr + 150888 150964   77  2  2   63   50   123 0.968   4.31
 3.11 Intr + 152642 152685   44  2  2  101   87    28 0.888   1.88
 3.12 Intr + 154705 154865  161  2  2   43   75    90 0.897   2.91
 3.13 Intr + 155707 155813  107  0  2   50   71   137 0.983   7.21
 3.14 Intr + 159117 159237  121  0  1   40   87   139 0.997   9.50
 3.15 Term + 160373 160441   69  1  0   86   53    86 0.988   2.84
 3.16 PlyA + 162808 162813    6                               1.05

 4.11 PlyA - 163751 163746    6                               1.05
 4.10 Term - 178817 178712  106  1  1   66   45   102 0.064   1.58
 4.09 Intr - 187006 186879  128  1  2   10   94   126 0.198   4.88
 4.08 Intr - 215968 215745  224  2  2  105   86    72 0.643   6.55
 4.07 Intr - 227016 226897  120  1  0    8   99    74 0.001   0.97
 4.06 Intr - 233842 233678  165  2  0   41  109    43 0.039   1.63
 4.05 Intr - 234351 234201  151  0  1   52   99    63 0.131   3.54
 4.04 Intr - 235452 235366   87  0  0   94   78   126 0.951  12.37
 4.03 Intr - 236693 236582  112  1  1   82   89   -11 0.192  -1.22
 4.02 Intr - 243239 243141   99  1  0   24   97   145 0.936   8.23
 4.01 Init - 244101 243989  113  0  2   74   20   107 0.802   2.18
 4.00 Prom - 244734 244695   40                              -5.76

 5.00 Prom + 249972 250011   40                              -1.46
 5.01 Init + 251821 251851   31  0  1   61  103     7 0.035  -0.42
 5.02 Intr + 258542 258639   98  0  2   55  103    87 0.099   6.63
 5.03 Term + 259094 259165   72  1  0   78   44    58 0.167  -1.69
 5.04 PlyA + 259875 259880    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 230348 230488  141  1  0   59   94   250 0.982  22.83
S.002 Term + 231405 231515  111  2  0   95   41    27 0.820  -2.74


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590f:38687583_38948020|GENSCAN_predicted_peptide_1|166_aa
MAGCRSRALPRGKAAKARREIEPSSCWPRCPGFSVLSAAARFSITSPSRPSRNPTIASLS
LFNNVDTYMLSAQVLVMLLLDALIWNEDLVSQSSMIPATAIGSEQAQPAMLNMNSKCQPS
MHACKRTAPQTALALTHQGLFQCVMDPTVQGIQVAALELGYLKQHS

>gi568815590f:38687583_38948020|GENSCAN_predicted_CDS_1|501_bp
atggcgggctgcaggtcccgagccctgccccgcgggaaggcagctaaggcccggcgagaa
attgagcccagcagctgctggcccaggtgcccaggcttctctgttttatcagctgctgca
agattctccatcacctccccaagcagacccagcaggaatccaaccattgcaagcctatca
cttttcaacaacgtggacacttacatgctttcagcacaggtgcttgtgatgttgttactg
gatgctctgatatggaacgaagacctcgtcagtcaatcttccatgatcccggccaccgca
attggctcagagcaggcccagcctgccatgctcaacatgaattctaagtgccaaccaagc
atgcacgcctgcaagcggacagcaccacagactgctctggcattaactcatcaggggctg
tttcagtgtgtcatggaccccactgttcagggcatccaagttgctgccctggagcttggc
tatctgaaacagcactcctga

>gi568815590f:38687583_38948020|GENSCAN_predicted_peptide_2|124_aa
MLRGPRTNGTPVSTSTSSTKILVFNTMHQRKEPGILEEMADSRTWKLKGASQLTMASAAL
RLASNATARPGRPSKASAASSHADGLYSRDVNKCPHINLYTNAYSSIIHNSCFRKQPKCP
STDE

>gi568815590f:38687583_38948020|GENSCAN_predicted_CDS_2|375_bp
atgctgagagggcctagaaccaatggcaccccagtatcaacaagcacatctagcaccaag
attttggttttcaacaccatgcaccaacgaaaggaaccagggatacttgaagaaatggct
gattctaggacttggaaactcaagggggcatcgcagctaactatggctagtgcagccctc
aggctggccagcaacgcgactgccaggcccggcaggccaagcaaagcctcggctgccagc
agccatgcagatggtctatactcgagagatgtgaacaaatgtccacacataaacctgtac
acgaatgcttatagcagcattattcataacagctgcttccgaaaacaacccaaatgtcca
tcaactgatgaatga

>gi568815590f:38687583_38948020|GENSCAN_predicted_peptide_3|916_aa
MGTERLEHESLISQAGVTSGKKTFRGAGAGGAALMAFSPWQILSPVQWAKWTWSAVRGGA
AGEDEAGGPEGDPEEEDSQAETKSLSFRQVHGVPAEMQTRLPPSICDSLCGPPVGKKSLP
GPSRGPTVYPKRSRGEEGRVMTGPWQLLGNGGLCRAVIRVIAEGSSDSEGNFETPEAETP
IRSPFKESCDPSLGLAGPGAKSQESQEADEQLVAEVVEKCSSKTCSKPSENEVPQQAIDS
HSVKNFREEPEHDFSKISIVRPFSIETKDSTDISAVLGTKAAHGCVTAVSGKALPSSPPD
ALQDEAMTEGSMGVTLEASAEADLKAGNSCPELVPSRRSKLRKPKPVPLRKKAIGGEFSD
TNAAVEGTPLPKASYHFSPEELDENTSPLLGDARFQKSPPDLKETPGTLSSDTNDSGVEL
GEESRSSPLKLEFDFTEDTGNIEARKALPRKLGRKLGSTLTPKIQKDGISKSAGLEQPTD
PVARDGPLSQTSSKPDPSQWESPSFNPFGSHSVLQNSPPLSSEGSYHFDPDNFDESMDPF
KPTTTLTSSDFCSPTGNHVNEILESPKKAKSRLITSGCKVKKHETQSLALDACSRDEGAV
ISQISDISNRDGHATDEEKLASTSCGQKSAGAEVKGEPEEDLEYFECSNVPVSTINHAFS
SSEAGIEKETCQKMEEDGSTVLGLLESSAEKAPVSVSCGGESPLDGICLSESDKTAVLTL
IREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQ
LTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQR
YQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEE
LTKICDELIAKLGKTD

>gi568815590f:38687583_38948020|GENSCAN_predicted_CDS_3|2751_bp
atgggaaccgaaagattagagcacgagtcactgatcagccaggcaggggtgacctcaggc
aagaaaaccttcagaggagctggagccggaggagccgcgctcatggcgttcagcccgtgg
cagatcctgtcccccgtgcagtgggcgaaatggacgtggtctgcggtacgcggcggggcc
gccggcgaggacgaggctggcgggcccgagggcgaccccgaggaggaggattcgcaagcc
gagaccaaatccttgagtttcaggcaagtacacggcgtccccgctgagatgcagacgcgc
ttgcctccatccatctgcgactccctctgtggcccccccgtggggaagaagtcgctcccc
ggcccttcccggggccctaccgtgtacccaaaacgcagccgcggtgaagaaggtcgcgtg
atgacaggcccctggcagctgctgggaaatggtggtctctgccgggctgtcatccgcgtg
attgcggaaggcagctcggattctgaaggtaattttgagactcctgaagctgaaaccccg
atccgatcacctttcaaggagtcctgtgatccatcactcggattggcaggacctggggcc
aaaagccaagaatcacaagaagctgatgaacagcttgtagcagaagtggttgaaaaatgt
tcatctaagacttgttctaaaccttcagaaaatgaagtgccacagcaggccattgactct
cactcagtcaagaatttcagagaagaacctgaacatgattttagcaaaatttccatcgtg
aggccattttcaatagaaacgaaggattccacggatatctcggcagtcctcggaacaaaa
gcagctcatggctgtgtaactgcagtctcaggcaaggctctgccttccagcccgccagac
gccctccaggacgaggcgatgacagaaggcagcatgggggtcaccctcgaggcctccgca
gaagctgatctaaaagctggcaactcctgtccagagcttgtgcccagcagaagaagcaag
ctgagaaagcccaagcctgtccccctgaggaagaaagcaattggaggagagttctcagac
accaacgctgctgtggagggcacacctctccccaaggcatcctatcacttcagtcctgaa
gagttggatgagaacacaagtcctttgctaggagatgccaggttccagaagtctccccct
gaccttaaagaaactcccggcactctcagtagtgacaccaacgactcaggggttgagctg
ggggaggagtcgaggagctcacctctcaagcttgagtttgatttcacagaagatacagga
aacatagaggccaggaaagcccttccaaggaagcttggcaggaaactgggtagcacactg
actcccaagatacaaaaagatggcatcagtaagtcagcaggtttagaacagcctacagac
ccagtggcacgagacgggcctctctcccaaacatcttccaagccagatcctagtcagtgg
gaaagccccagcttcaacccctttgggagccactctgttctgcagaactccccacccctc
tcttctgagggctcctaccactttgacccagataactttgacgaatccatggatcccttt
aaaccaactacgaccttaacaagcagtgacttttgttctcccactggtaatcacgttaat
gaaatcttagaatcacccaagaaggcaaagtcgcgtttaataacgagtggctgtaaggtg
aagaagcatgaaactcagtctctcgccctggatgcatgttctcgggatgaaggggcagtg
atctcccagatttcagacatttctaatagggatggccatgctactgatgaggagaaactg
gcatccacgtcatgtggtcagaaatcagctggtgccgaggtgaaaggtgagccagaggaa
gacctggagtactttgaatgttccaatgttcctgtgtctaccataaatcatgcgttttca
tcctcagaagcaggcatagagaaggagacgtgccagaagatggaagaagacgggtccact
gtgcttgggctgctggagtcctctgcagagaaggcccctgtgtcggtgtcctgtggaggt
gagagccccctggatgggatctgcctcagcgaatcagacaagacagccgtgctcacctta
ataagagaagagataattactaaagagattgaagcaaatgaatggaagaagaaatacgaa
gagacccggcaagaagttttggagatgaggaaaattgtagctgaatatgaaaagactatt
gctcaaatgattgaagatgaacaaaggacaagtatgacctctcagaagagcttccagcaa
ctgaccatggagaaggaacaggccctggctgaccttaactctgtggaaaggtccctttct
gatctcttcaggagatatgagaacctgaaaggtgttctggaagggttcaagaagaatgaa
gaagccttgaagaaatgtgctcaggattacttagccagagttaaacaagaggagcagcga
taccaggccctgaaaatccacgcagaagagaaactggacaaagccaatgaagagattgct
caggttcgaacaaaagcaaaggctgagagtgcagctctccatgctggactccgcaaagag
cagatgaaggtggagtccctggaaagggccctgcagcagaagaaccaagaaattgaagaa
ctgacaaaaatctgtgatgagctgattgcaaagctgggaaagactgactga

>gi568815590f:38687583_38948020|GENSCAN_predicted_peptide_4|434_aa
MVKFPTSPYKPTEFIKYWKTNAALPTTGKQRFLVTSPRDTAAGERKGYASQQPTESPWLL
HQQPTERKEERRAHLCPTMTAVSPTQNALLLLFISAWGRVGITIKGHLLTLKLPGGKGLT
EFIFHIIYKTLHGLSTENLTETSTLKSGVAVWLFTQQRTNPTTEEVKCPELFLYHSKTLF
FQEYAKPGCEERSNSPGRQLATARQDSPSKSVRVKHSPSGEAWREAGKSRQKSIRMTCTN
TAGSNRVEFLVAQAHEGPLSTATQSCEMAGSGHPPQRDAGSAEQKPAPTKTCMSSRFILT
TQKYRAEYGSAHYHDMMGSAGPISLTQKREESTNDKEKERVAKTLHQRAGSFSINTKTNG
AKFPCSPDTADSEALPSGCHCLRLRHKQHNLEEDSWLQLRSASASDSHRSTNLTVNCVCE
ESRLHAAYENLTNA

>gi568815590f:38687583_38948020|GENSCAN_predicted_CDS_4|1305_bp
atggtgaagttcccaaccagtccatacaagcccactgagttcataaagtactggaagacc
aatgcagctctgcccaccaccggcaaacaacgttttctcgtgacatctcccagagacaca
gcagctggtgagagaaaaggctacgccagccagcagcccacagagtcaccctggctgctg
caccagcagccaacagagaggaaggaggaaaggcgagctcacctctgccccacaatgact
gctgtttccccaactcagaacgcccttctcctcctcttcatctctgcttggggcagagta
ggtataacaatcaaaggacatcttctaaccctgaagcttcctggtggcaaaggcctcacc
gaattcattttccacatcatctacaagaccttgcacgggctgagcacagagaacttaact
gaaacatccacacttaaatctggagtggccgtttggctgttcacacaacaaagaactaac
ccaaccactgaagaagtaaaatgtcctgaattatttctgtatcacagcaagactctcttt
tttcaagaatatgccaagccagggtgtgaagaaagatccaactctccagggaggcagctg
gcaacagccagacaggattccccaagcaagtcagttcgggtaaagcacagccctagtggg
gaagcatggcgtgaagcaggtaaatcaagacaaaaatccattcgaatgacttgcactaac
acagcaggctccaacagagtggagttcctggtggcccaagcccatgaaggccctctgtcc
acagccacacaaagttgtgagatggctggctcaggccatcccccacaacgggacgctggg
tcagcagaacaaaaacctgcaccaaccaaaacctgcatgtcttcaagatttattttaacc
actcaaaaataccgagctgaatatggttcagctcactaccatgacatgatgggatctgca
ggccctatttccttaacacagaagagagaagaaagcaccaatgacaaggaaaaagaaagg
gttgcaaaaactcttcaccaaagggcaggcagtttctcaatcaataccaagaccaatggt
gccaagttcccttgctctccggatacggctgattcagaagctttgccaagtggatgccat
tgcctgcgcctgcgtcacaagcagcacaacttagaagaggacagctggctgcagctcaga
tcagcgtcagcatcggattctcatagaagcacaaaccttaccgtgaattgcgtgtgcgag
gaatctaggttgcacgctgcttatgagaatctaaccaatgcctga

>gi568815590f:38687583_38948020|GENSCAN_predicted_peptide_5|66_aa
MSWFAESPFHVINALSQRYFLQANDQKDMKDWVEALNQASKITKSLLFKSITELVHGLSY
ECALFP

>gi568815590f:38687583_38948020|GENSCAN_predicted_CDS_5|201_bp
atgagttggtttgccgaatcgcccttccatgttatcaatgccctgtctcagagatatttc
cttcaagccaatgatcagaaagatatgaaggactgggttgaagccctgaaccaagccagc
aagatcaccaaaagccttctgtttaaaagcatcacagagctcgttcatggactgtcctac
gagtgtgctctttttccttga