Result of FASTA (omim) for pF1KB9544
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9544, 601 aa
  1>>>pF1KB9544 601 - 601 aa - 601 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7699+/-0.000344; mu= 4.2886+/- 0.022
 mean_var=206.3536+/-42.285, 0's: 0 Z-trim(121.6): 68  B-trim: 1012 in 1/58
 Lambda= 0.089283
 statistics sampled from 38343 (38427) to 38343 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.451), width:  16
 Scan time: 10.250

The best scores are:                                      opt bits E(85289)
NP_001003681 (OMIM: 604702) HMG domain-containing  ( 601) 3880 512.4 1.7e-144
XP_006724163 (OMIM: 604702) PREDICTED: HMG domain- ( 644) 3825 505.4 2.4e-142
XP_006724164 (OMIM: 604702) PREDICTED: HMG domain- ( 603) 3466 459.1 1.9e-128
XP_006724165 (OMIM: 604702) PREDICTED: HMG domain- ( 492) 3172 421.2 4.1e-117


>>NP_001003681 (OMIM: 604702) HMG domain-containing prot  (601 aa)
 initn: 3880 init1: 3880 opt: 3880  Z-score: 2715.2  bits: 512.4 E(85289): 1.7e-144
Smith-Waterman score: 3880; 100.0% identity (100.0% similar) in 601 aa overlap (1-601:1-601)

               10        20        30        40        50        60
pF1KB9 MAYDDSVKKEDCFDGDHTFEDIGLAAGRSQREKKRSYKDFLREEEEIAAQVRNSSKKKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAYDDSVKKEDCFDGDHTFEDIGLAAGRSQREKKRSYKDFLREEEEIAAQVRNSSKKKLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 DSELYFLGTDTHKKKRKHSSDDYYYGDISSLESSQKKKKKSSPQSTDTAMDLLKAITSPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSELYFLGTDTHKKKRKHSSDDYYYGDISSLESSQKKKKKSSPQSTDTAMDLLKAITSPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 AAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVSGSSGELPLEDGGSHKSKKMKPLYVNTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVSGSSGELPLEDGGSHKSKKMKPLYVNTE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 TLTLREPDGLKMKLILSPKEKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLGHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLTLREPDGLKMKLILSPKEKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLGHE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 ELEAGELVIDDSYREIKKKKKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELEAGELVIDDSYREIKKKKKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 GPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKKEEKDKERERGEKPKKKNMSAYQVFCKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKKEEKDKERERGEKPKKKNMSAYQVFCKE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 YRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRKAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRKAS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 SSEGSMKVKASSVGVLSPQKKSPPTTMLLPASPAKAPETEPIDVAAHLQLLGESLSLIGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSEGSMKVKASSVGVLSPQKKSPPTTMLLPASPAKAPETEPIDVAAHLQLLGESLSLIGH
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 RLQETEGMVAVSGSLSVLLDSIICALGPLACLTTQLPELNGCPKQVLSNTLDNIAYIMPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLQETEGMVAVSGSLSVLLDSIICALGPLACLTTQLPELNGCPKQVLSNTLDNIAYIMPG
              550       560       570       580       590       600

        
pF1KB9 L
       :
NP_001 L
        

>>XP_006724163 (OMIM: 604702) PREDICTED: HMG domain-cont  (644 aa)
 initn: 3822 init1: 3822 opt: 3825  Z-score: 2676.5  bits: 505.4 E(85289): 2.4e-142
Smith-Waterman score: 3825; 99.2% identity (99.5% similar) in 598 aa overlap (4-601:47-644)

                                          10        20        30   
pF1KB9                            MAYDDSVKKEDCFDGDHTFEDIGLAAGRSQREK
                                     : .  .::::::::::::::::::::::::
XP_006 VCALGSTEAPWPLALFSPSPRWRRSAALRRDPGEPSEDCFDGDHTFEDIGLAAGRSQREK
         20        30        40        50        60        70      

            40        50        60        70        80        90   
pF1KB9 KRSYKDFLREEEEIAAQVRNSSKKKLKDSELYFLGTDTHKKKRKHSSDDYYYGDISSLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KRSYKDFLREEEEIAAQVRNSSKKKLKDSELYFLGTDTHKKKRKHSSDDYYYGDISSLES
         80        90       100       110       120       130      

           100       110       120       130       140       150   
pF1KB9 SQKKKKKSSPQSTDTAMDLLKAITSPLAAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SQKKKKKSSPQSTDTAMDLLKAITSPLAAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVS
        140       150       160       170       180       190      

           160       170       180       190       200       210   
pF1KB9 GSSGELPLEDGGSHKSKKMKPLYVNTETLTLREPDGLKMKLILSPKEKGSSSVDEESFQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GSSGELPLEDGGSHKSKKMKPLYVNTETLTLREPDGLKMKLILSPKEKGSSSVDEESFQY
        200       210       220       230       240       250      

           220       230       240       250       260       270   
pF1KB9 PSQQATVKKSSKKSARDEQGALLLGHELQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PSQQATVKKSSKKSARDEQGALLLGHELQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQ
        260       270       280       290       300       310      

           280       290       300       310       320       330   
pF1KB9 FAESHSANLDLSGLEPILVESDSSSGGELEAGELVIDDSYREIKKKKKSKKSKKKKDKEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FAESHSANLDLSGLEPILVESDSSSGGELEAGELVIDDSYREIKKKKKSKKSKKKKDKEK
        320       330       340       350       360       370      

           340       350       360       370       380       390   
pF1KB9 HKEKRHSKSKRSLGLSAVPVGEVTVTSGPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 HKEKRHSKSKRSLGLSAVPVGEVTVTSGPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKK
        380       390       400       410       420       430      

           400       410       420       430       440       450   
pF1KB9 EEKDKERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EEKDKERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDK
        440       450       460       470       480       490      

           460       470       480       490       500       510   
pF1KB9 LIWKQKAQYLQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQKKSPPTTMLLPASP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LIWKQKAQYLQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQKKSPPTTMLLPASP
        500       510       520       530       540       550      

           520       530       540       550       560       570   
pF1KB9 AKAPETEPIDVAAHLQLLGESLSLIGHRLQETEGMVAVSGSLSVLLDSIICALGPLACLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AKAPETEPIDVAAHLQLLGESLSLIGHRLQETEGMVAVSGSLSVLLDSIICALGPLACLT
        560       570       580       590       600       610      

           580       590       600 
pF1KB9 TQLPELNGCPKQVLSNTLDNIAYIMPGL
       ::::::::::::::::::::::::::::
XP_006 TQLPELNGCPKQVLSNTLDNIAYIMPGL
        620       630       640    

>>XP_006724164 (OMIM: 604702) PREDICTED: HMG domain-cont  (603 aa)
 initn: 3463 init1: 3463 opt: 3466  Z-score: 2427.0  bits: 459.1 E(85289): 1.9e-128
Smith-Waterman score: 3466; 99.1% identity (99.4% similar) in 543 aa overlap (4-546:47-589)

                                          10        20        30   
pF1KB9                            MAYDDSVKKEDCFDGDHTFEDIGLAAGRSQREK
                                     : .  .::::::::::::::::::::::::
XP_006 VCALGSTEAPWPLALFSPSPRWRRSAALRRDPGEPSEDCFDGDHTFEDIGLAAGRSQREK
         20        30        40        50        60        70      

            40        50        60        70        80        90   
pF1KB9 KRSYKDFLREEEEIAAQVRNSSKKKLKDSELYFLGTDTHKKKRKHSSDDYYYGDISSLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KRSYKDFLREEEEIAAQVRNSSKKKLKDSELYFLGTDTHKKKRKHSSDDYYYGDISSLES
         80        90       100       110       120       130      

           100       110       120       130       140       150   
pF1KB9 SQKKKKKSSPQSTDTAMDLLKAITSPLAAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SQKKKKKSSPQSTDTAMDLLKAITSPLAAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVS
        140       150       160       170       180       190      

           160       170       180       190       200       210   
pF1KB9 GSSGELPLEDGGSHKSKKMKPLYVNTETLTLREPDGLKMKLILSPKEKGSSSVDEESFQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GSSGELPLEDGGSHKSKKMKPLYVNTETLTLREPDGLKMKLILSPKEKGSSSVDEESFQY
        200       210       220       230       240       250      

           220       230       240       250       260       270   
pF1KB9 PSQQATVKKSSKKSARDEQGALLLGHELQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PSQQATVKKSSKKSARDEQGALLLGHELQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQ
        260       270       280       290       300       310      

           280       290       300       310       320       330   
pF1KB9 FAESHSANLDLSGLEPILVESDSSSGGELEAGELVIDDSYREIKKKKKSKKSKKKKDKEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FAESHSANLDLSGLEPILVESDSSSGGELEAGELVIDDSYREIKKKKKSKKSKKKKDKEK
        320       330       340       350       360       370      

           340       350       360       370       380       390   
pF1KB9 HKEKRHSKSKRSLGLSAVPVGEVTVTSGPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 HKEKRHSKSKRSLGLSAVPVGEVTVTSGPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKK
        380       390       400       410       420       430      

           400       410       420       430       440       450   
pF1KB9 EEKDKERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EEKDKERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDK
        440       450       460       470       480       490      

           460       470       480       490       500       510   
pF1KB9 LIWKQKAQYLQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQKKSPPTTMLLPASP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LIWKQKAQYLQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQKKSPPTTMLLPASP
        500       510       520       530       540       550      

           520       530       540       550       560       570   
pF1KB9 AKAPETEPIDVAAHLQLLGESLSLIGHRLQETEGMVAVSGSLSVLLDSIICALGPLACLT
       :::::::::::::::::::::::::::::::::                           
XP_006 AKAPETEPIDVAAHLQLLGESLSLIGHRLQETESNTLDNIAYIMPGL             
        560       570       580       590       600                

           580       590       600 
pF1KB9 TQLPELNGCPKQVLSNTLDNIAYIMPGL

>>XP_006724165 (OMIM: 604702) PREDICTED: HMG domain-cont  (492 aa)
 initn: 3172 init1: 3172 opt: 3172  Z-score: 2223.5  bits: 421.2 E(85289): 4.1e-117
Smith-Waterman score: 3172; 100.0% identity (100.0% similar) in 492 aa overlap (110-601:1-492)

      80        90       100       110       120       130         
pF1KB9 SDDYYYGDISSLESSQKKKKKSSPQSTDTAMDLLKAITSPLAAGSKPSKKTGEKSSGSSS
                                     ::::::::::::::::::::::::::::::
XP_006                               MDLLKAITSPLAAGSKPSKKTGEKSSGSSS
                                             10        20        30

     140       150       160       170       180       190         
pF1KB9 HSESKKEHHRKKVSGSSGELPLEDGGSHKSKKMKPLYVNTETLTLREPDGLKMKLILSPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 HSESKKEHHRKKVSGSSGELPLEDGGSHKSKKMKPLYVNTETLTLREPDGLKMKLILSPK
               40        50        60        70        80        90

     200       210       220       230       240       250         
pF1KB9 EKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLGHELQSFLKTARKKHKSSSDAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLGHELQSFLKTARKKHKSSSDAH
              100       110       120       130       140       150

     260       270       280       290       300       310         
pF1KB9 SSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGGELEAGELVIDDSYREIKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGGELEAGELVIDDSYREIKKK
              160       170       180       190       200       210

     320       330       340       350       360       370         
pF1KB9 KKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTSGPPPSIPYAGAAAPPLPLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTSGPPPSIPYAGAAAPPLPLP
              220       230       240       250       260       270

     380       390       400       410       420       430         
pF1KB9 GLHTDGHSEKKKKKEEKDKERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GLHTDGHSEKKKKKEEKDKERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSK
              280       290       300       310       320       330

     440       450       460       470       480       490         
pF1KB9 KLAEVWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KLAEVWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQ
              340       350       360       370       380       390

     500       510       520       530       540       550         
pF1KB9 KKSPPTTMLLPASPAKAPETEPIDVAAHLQLLGESLSLIGHRLQETEGMVAVSGSLSVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KKSPPTTMLLPASPAKAPETEPIDVAAHLQLLGESLSLIGHRLQETEGMVAVSGSLSVLL
              400       410       420       430       440       450

     560       570       580       590       600 
pF1KB9 DSIICALGPLACLTTQLPELNGCPKQVLSNTLDNIAYIMPGL
       ::::::::::::::::::::::::::::::::::::::::::
XP_006 DSIICALGPLACLTTQLPELNGCPKQVLSNTLDNIAYIMPGL
              460       470       480       490  




601 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:07:57 2016 done: Fri Nov  4 17:07:59 2016
 Total Scan time: 10.250 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com