Result of FASTA (omim) for pF1KB9273
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9273, 376 aa
  1>>>pF1KB9273 376 - 376 aa - 376 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2973+/-0.000367; mu= 16.2834+/- 0.023
 mean_var=62.5979+/-12.387, 0's: 0 Z-trim(113.1): 23  B-trim: 299 in 1/53
 Lambda= 0.162104
 statistics sampled from 22255 (22273) to 22255 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.261), width:  16
 Scan time:  7.650

The best scores are:                                      opt bits E(85289)
NP_001269714 (OMIM: 580000,580000,610230,613070) m ( 376) 2619 621.2 1.2e-177
NP_060476 (OMIM: 580000,580000,610230,613070) mito ( 421) 2360 560.7 2.2e-159
XP_011528573 (OMIM: 580000,580000,610230,613070) P ( 386) 2137 508.5  1e-143
XP_011528574 (OMIM: 580000,580000,610230,613070) P ( 370) 1968 469.0 7.9e-132
XP_011528575 (OMIM: 580000,580000,610230,613070) P ( 355) 1760 420.3 3.4e-117
NP_001269711 (OMIM: 580000,580000,610230,613070) m ( 307) 1525 365.3  1e-100
XP_011528576 (OMIM: 580000,580000,610230,613070) P ( 307) 1525 365.3  1e-100
NP_001269713 (OMIM: 580000,580000,610230,613070) m ( 236) 1402 336.5 3.8e-92
XP_005261738 (OMIM: 580000,580000,610230,613070) P ( 244) 1402 336.5 3.9e-92
NP_001269712 (OMIM: 580000,580000,610230,613070) m ( 281) 1143 276.0 7.5e-74
XP_011528577 (OMIM: 580000,580000,610230,613070) P ( 289) 1143 276.0 7.7e-74
XP_005261735 (OMIM: 580000,580000,610230,613070) P ( 289) 1143 276.0 7.7e-74


>>NP_001269714 (OMIM: 580000,580000,610230,613070) mitoc  (376 aa)
 initn: 2619 init1: 2619 opt: 2619  Z-score: 3310.4  bits: 621.2 E(85289): 1.2e-177
Smith-Waterman score: 2619; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)

               10        20        30        40        50        60
pF1KB9 MQALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 CQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 DAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 PGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 YRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVCCVLQGGRVPGQREDPAAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVCCVLQGGRVPGQREDPAAGA
              310       320       330       340       350       360

              370      
pF1KB9 VCLHAPEGPAQSWDGH
       ::::::::::::::::
NP_001 VCLHAPEGPAQSWDGH
              370      

>>NP_060476 (OMIM: 580000,580000,610230,613070) mitochon  (421 aa)
 initn: 2358 init1: 2358 opt: 2360  Z-score: 2982.3  bits: 560.7 E(85289): 2.2e-159
Smith-Waterman score: 2360; 98.3% identity (98.3% similar) in 352 aa overlap (1-349:1-352)

               10        20        30        40        50        60
pF1KB9 MQALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MQALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 CQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 CQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 DAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 PGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 PGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPAL
              250       260       270       280       290       300

              310       320       330       340          350       
pF1KB9 YRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVCCVL---QGGRVPGQREDPA
       :::::::::::::::::::::::::::::::::::::::: :::   : : :        
NP_060 YRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVQAV
              310       320       330       340       350       360

       360       370                                               
pF1KB9 AGAVCLHAPEGPAQSWDGH                                         
                                                                   
NP_060 RALATGQFAVFYKGDECLGSGKILRLGPSAYTLQKGQRRAGMATESPSDSPEDGPGLSPL
              370       380       390       400       410       420

>>XP_011528573 (OMIM: 580000,580000,610230,613070) PREDI  (386 aa)
 initn: 2135 init1: 2135 opt: 2137  Z-score: 2701.0  bits: 508.5 E(85289): 1e-143
Smith-Waterman score: 2137; 98.1% identity (98.1% similar) in 317 aa overlap (36-349:1-317)

          10        20        30        40        50        60     
pF1KB9 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRVCQILD
                                     ::::::::::::::::::::::::::::::
XP_011                               MKNWDSLDEHGVCTADKDCEDAYRVCQILD
                                             10        20        30

          70        80        90       100       110       120     
pF1KB9 IPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADAIAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADAIAT
               40        50        60        70        80        90

         130       140       150       160       170       180     
pF1KB9 GHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDAL
              100       110       120       130       140       150

         190       200       210       220       230       240     
pF1KB9 RRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFI
              160       170       180       190       200       210

         250       260       270       280       290       300     
pF1KB9 SIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLL
              220       230       240       250       260       270

         310       320       330       340          350       360  
pF1KB9 RTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVCCVL---QGGRVPGQREDPAAGAVC
       ::::::::::::::::::::::::::::::::::: :::   : : :             
XP_011 RTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVQAVRALAT
              280       290       300       310       320       330

            370                                                
pF1KB9 LHAPEGPAQSWDGH                                          
                                                               
XP_011 GQFAVFYKGDECLGSGKILRLGPSAYTLQKGQRRAGMATESPSDSPEDGPGLSPLL
              340       350       360       370       380      

>>XP_011528574 (OMIM: 580000,580000,610230,613070) PREDI  (370 aa)
 initn: 2031 init1: 1760 opt: 1968  Z-score: 2487.7  bits: 469.0 E(85289): 7.9e-132
Smith-Waterman score: 1981; 80.6% identity (83.4% similar) in 386 aa overlap (1-376:1-370)

               10        20        30        40        50        60
pF1KB9 MQALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 CQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 DAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPR
              190       200       210       220       230       240

              250       260                 270       280       290
pF1KB9 PGHFISIEDNKVLGTHKGWFLY----TLGQ-----RA-NIGGLREPWYVVEKDSVKGDVF
       ::::::::::::::::::        . :      :: . ::  .     . :.:   . 
XP_011 PGHFISIEDNKVLGTHKGPPDRPPSPVQGPAEDQPRALDCGGASRSTGPGQDDGV--PLP
              250       260       270       280       290          

              300       310       320       330       340       350
pF1KB9 VAPRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVCCVLQGGRVP
       . :     ::  :    :: : ...   .         ::         :::::::::::
XP_011 IPPPDGTSALCAD--PQSRWHRVGDSCAGCAC-----PCH-------RTVCCVLQGGRVP
      300       310         320            330              340    

              360       370      
pF1KB9 GQREDPAAGAVCLHAPEGPAQSWDGH
       ::::::::::::::::::::::::::
XP_011 GQREDPAAGAVCLHAPEGPAQSWDGH
          350       360       370

>>XP_011528575 (OMIM: 580000,580000,610230,613070) PREDI  (355 aa)
 initn: 1760 init1: 1760 opt: 1760  Z-score: 2225.1  bits: 420.3 E(85289): 3.4e-117
Smith-Waterman score: 1760; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)

               10        20        30        40        50        60
pF1KB9 MQALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 CQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 DAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 PGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPAL
       ::::::::::::::::::                                          
XP_011 PGHFISIEDNKVLGTHKGPPDRPPSPVQGPAEDQPRALDCGGASRSTGPGQDDGVPLPIP
              250       260       270       280       290       300

>>NP_001269711 (OMIM: 580000,580000,610230,613070) mitoc  (307 aa)
 initn: 1523 init1: 1523 opt: 1525  Z-score: 1929.0  bits: 365.3 E(85289): 1e-100
Smith-Waterman score: 1525; 97.4% identity (97.4% similar) in 234 aa overlap (119-349:5-238)

       90       100       110       120       130       140        
pF1KB9 YEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADAIATGHYARTSLEDEEVFEQKHVKKPE
                                     ::::::::::::::::::::::::::::::
NP_001                           MMCSGADAIATGHYARTSLEDEEVFEQKHVKKPE
                                         10        20        30    

      150       160       170       180       190       200        
pF1KB9 GLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDALRRTIFPLGGLTKEFVKKIAAENR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDALRRTIFPLGGLTKEFVKKIAAENR
           40        50        60        70        80        90    

      210       220       230       240       250       260        
pF1KB9 LHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRA
          100       110       120       130       140       150    

      270       280       290       300       310       320        
pF1KB9 NIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMME
          160       170       180       190       200       210    

      330       340          350       360       370               
pF1KB9 CHFRFRHQMALVCCVL---QGGRVPGQREDPAAGAVCLHAPEGPAQSWDGH         
       :::::::::::: :::   : : :                                    
NP_001 CHFRFRHQMALVPCVLTLNQDGTVWVTAVQAVRALATGQFAVFYKGDECLGSGKILRLGP
          220       230       240       250       260       270    

>>XP_011528576 (OMIM: 580000,580000,610230,613070) PREDI  (307 aa)
 initn: 1523 init1: 1523 opt: 1525  Z-score: 1929.0  bits: 365.3 E(85289): 1e-100
Smith-Waterman score: 1525; 97.4% identity (97.4% similar) in 234 aa overlap (119-349:5-238)

       90       100       110       120       130       140        
pF1KB9 YEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADAIATGHYARTSLEDEEVFEQKHVKKPE
                                     ::::::::::::::::::::::::::::::
XP_011                           MMCSGADAIATGHYARTSLEDEEVFEQKHVKKPE
                                         10        20        30    

      150       160       170       180       190       200        
pF1KB9 GLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDALRRTIFPLGGLTKEFVKKIAAENR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDALRRTIFPLGGLTKEFVKKIAAENR
           40        50        60        70        80        90    

      210       220       230       240       250       260        
pF1KB9 LHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRA
          100       110       120       130       140       150    

      270       280       290       300       310       320        
pF1KB9 NIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMME
          160       170       180       190       200       210    

      330       340          350       360       370               
pF1KB9 CHFRFRHQMALVCCVL---QGGRVPGQREDPAAGAVCLHAPEGPAQSWDGH         
       :::::::::::: :::   : : :                                    
XP_011 CHFRFRHQMALVPCVLTLNQDGTVWVTAVQAVRALATGQFAVFYKGDECLGSGKILRLGP
          220       230       240       250       260       270    

>>NP_001269713 (OMIM: 580000,580000,610230,613070) mitoc  (236 aa)
 initn: 1395 init1: 1395 opt: 1402  Z-score: 1775.3  bits: 336.5 E(85289): 3.8e-92
Smith-Waterman score: 1402; 93.9% identity (97.2% similar) in 213 aa overlap (164-376:24-236)

           140       150       160       170       180       190   
pF1KB9 EDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDALRRTIFPLG
                                     :..  .:..  . : .::::::::::::::
NP_001        MPLPQVTMQELPWKMKKSLSRSTLRSPKGFSEIGLKLEMVSQDALRRTIFPLG
                      10        20        30        40        50   

           200       210       220       230       240       250   
pF1KB9 GLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIEDNKVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIEDNKVL
            60        70        80        90       100       110   

           260       270       280       290       300       310   
pF1KB9 GTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWI
           120       130       140       150       160       170   

           320       330       340       350       360       370   
pF1KB9 AEEPPAALVRDKMMECHFRFRHQMALVCCVLQGGRVPGQREDPAAGAVCLHAPEGPAQSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEEPPAALVRDKMMECHFRFRHQMALVCCVLQGGRVPGQREDPAAGAVCLHAPEGPAQSW
           180       190       200       210       220       230   

          
pF1KB9 DGH
       :::
NP_001 DGH
          

>>XP_005261738 (OMIM: 580000,580000,610230,613070) PREDI  (244 aa)
 initn: 1395 init1: 1395 opt: 1402  Z-score: 1775.1  bits: 336.5 E(85289): 3.9e-92
Smith-Waterman score: 1402; 93.9% identity (97.2% similar) in 213 aa overlap (164-376:32-244)

           140       150       160       170       180       190   
pF1KB9 EDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDALRRTIFPLG
                                     :..  .:..  . : .::::::::::::::
XP_005 LWIILGQMPLPQVTMQELPWKMKKSLSRSTLRSPKGFSEIGLKLEMVSQDALRRTIFPLG
              10        20        30        40        50        60 

           200       210       220       230       240       250   
pF1KB9 GLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIEDNKVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIEDNKVL
              70        80        90       100       110       120 

           260       270       280       290       300       310   
pF1KB9 GTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWI
             130       140       150       160       170       180 

           320       330       340       350       360       370   
pF1KB9 AEEPPAALVRDKMMECHFRFRHQMALVCCVLQGGRVPGQREDPAAGAVCLHAPEGPAQSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEEPPAALVRDKMMECHFRFRHQMALVCCVLQGGRVPGQREDPAAGAVCLHAPEGPAQSW
             190       200       210       220       230       240 

          
pF1KB9 DGH
       :::
XP_005 DGH
          

>>NP_001269712 (OMIM: 580000,580000,610230,613070) mitoc  (281 aa)
 initn: 1134 init1: 1134 opt: 1143  Z-score: 1446.8  bits: 276.0 E(85289): 7.5e-74
Smith-Waterman score: 1143; 89.9% identity (93.7% similar) in 189 aa overlap (164-349:24-212)

           140       150       160       170       180       190   
pF1KB9 EDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDALRRTIFPLG
                                     :..  .:..  . : .::::::::::::::
NP_001        MPLPQVTMQELPWKMKKSLSRSTLRSPKGFSEIGLKLEMVSQDALRRTIFPLG
                      10        20        30        40        50   

           200       210       220       230       240       250   
pF1KB9 GLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIEDNKVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIEDNKVL
            60        70        80        90       100       110   

           260       270       280       290       300       310   
pF1KB9 GTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWI
           120       130       140       150       160       170   

           320       330       340          350       360       370
pF1KB9 AEEPPAALVRDKMMECHFRFRHQMALVCCVL---QGGRVPGQREDPAAGAVCLHAPEGPA
       ::::::::::::::::::::::::::: :::   : : :                     
NP_001 AEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVQAVRALATGQFAVFYK
           180       190       200       210       220       230   

                                                       
pF1KB9 QSWDGH                                          
                                                       
NP_001 GDECLGSGKILRLGPSAYTLQKGQRRAGMATESPSDSPEDGPGLSPLL
           240       250       260       270       280 




376 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:01:14 2016 done: Fri Nov  4 17:01:16 2016
 Total Scan time:  7.650 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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