FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8994, 329 aa 1>>>pF1KB8994 329 - 329 aa - 329 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0414+/-0.000688; mu= 18.6088+/- 0.042 mean_var=100.5185+/-26.350, 0's: 0 Z-trim(111.8): 71 B-trim: 1489 in 2/48 Lambda= 0.127924 statistics sampled from 12597 (12700) to 12597 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.39), width: 16 Scan time: 2.400 The best scores are: opt bits E(32554) CCDS46515.1 GPBAR1 gene_id:151306|Hs108|chr2 ( 330) 2204 416.8 1.2e-116 >>CCDS46515.1 GPBAR1 gene_id:151306|Hs108|chr2 (330 aa) initn: 2202 init1: 1774 opt: 2204 Z-score: 2207.9 bits: 416.8 E(32554): 1.2e-116 Smith-Waterman score: 2204; 99.7% identity (99.7% similar) in 330 aa overlap (1-329:1-330) 10 20 30 40 50 60 pF1KB8 MTPNSTGEVPSPIPKGALGLSLALASLIITANLLLALGIAWDRRLRSPPAGCFFLSLLLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MTPNSTGEVPSPIPKGALGLSLALASLIITANLLLALGIAWDRRLRSPPAGCFFLSLLLA 10 20 30 40 50 60 70 80 90 100 110 pF1KB8 GLLTGLALP-LPGLWNQSRRGYWSCLLVYLAPNFSFLSLLANLLLVHGERYMAVLRPLQP ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 GLLTGLALPTLPGLWNQSRRGYWSCLLVYLAPNFSFLSLLANLLLVHGERYMAVLRPLQP 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB8 PGSIRLALLLTWAGPLLFASLPALGWNHWTPGANCSSQAIFPAPYLYLEVYGLLLPAVGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 PGSIRLALLLTWAGPLLFASLPALGWNHWTPGANCSSQAIFPAPYLYLEVYGLLLPAVGA 130 140 150 160 170 180 180 190 200 210 220 230 pF1KB8 AAFLSVRVLATAHRQLQDICRLERAVCRDEPSALARALTWRQARAQAGAMLLFGLCWGPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 AAFLSVRVLATAHRQLQDICRLERAVCRDEPSALARALTWRQARAQAGAMLLFGLCWGPY 190 200 210 220 230 240 240 250 260 270 280 290 pF1KB8 VATLLLSVLAYEQRPPLGPGTLLSLLSLGSASAAAVPVAMGLGDQRYTAPWRAAAQRCLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 VATLLLSVLAYEQRPPLGPGTLLSLLSLGSASAAAVPVAMGLGDQRYTAPWRAAAQRCLQ 250 260 270 280 290 300 300 310 320 pF1KB8 GLWGRASRDSPGPSIAYHPSSQSSVDLDLN :::::::::::::::::::::::::::::: CCDS46 GLWGRASRDSPGPSIAYHPSSQSSVDLDLN 310 320 330 329 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 16:55:29 2016 done: Fri Nov 4 16:55:29 2016 Total Scan time: 2.400 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]