FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8992, 201 aa 1>>>pF1KB8992 201 - 201 aa - 201 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1698+/-0.000981; mu= 14.6920+/- 0.060 mean_var=81.7325+/-17.082, 0's: 0 Z-trim(106.0): 171 B-trim: 298 in 1/50 Lambda= 0.141866 statistics sampled from 8551 (8747) to 8551 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.269), width: 16 Scan time: 1.720 The best scores are: opt bits E(32554) CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 ( 201) 1307 276.9 5.7e-75 CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 ( 192) 1245 264.2 3.7e-71 CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 ( 200) 921 197.9 3.5e-51 CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 ( 201) 770 167.0 7e-42 CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 ( 175) 527 117.2 5.9e-27 CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 ( 181) 525 116.8 8.1e-27 CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 ( 181) 523 116.4 1.1e-26 CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 ( 180) 519 115.6 1.9e-26 CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 ( 192) 516 115.0 3e-26 CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 ( 180) 503 112.3 1.8e-25 CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 ( 196) 454 102.3 2e-22 CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 ( 574) 452 102.3 5.9e-22 CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 424 96.2 1.3e-20 CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 ( 179) 422 95.7 1.8e-20 CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 ( 182) 415 94.3 4.8e-20 CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2 ( 179) 413 93.9 6.4e-20 CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 ( 569) 417 95.2 8.4e-20 CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 ( 546) 406 92.9 3.9e-19 CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 ( 184) 387 88.6 2.6e-18 CCDS45664.1 ARL5C gene_id:390790|Hs108|chr17 ( 179) 348 80.6 6.4e-16 CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 ( 186) 331 77.1 7.4e-15 CCDS46425.1 ARL5A gene_id:26225|Hs108|chr2 ( 142) 329 76.6 8e-15 CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 ( 186) 328 76.5 1.1e-14 CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3 ( 186) 323 75.5 2.3e-14 CCDS13533.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 201) 322 75.3 2.8e-14 CCDS46630.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 173) 295 69.7 1.2e-12 CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3 ( 428) 299 70.9 1.3e-12 CCDS73510.1 ARL1 gene_id:400|Hs108|chr12 ( 135) 288 68.2 2.6e-12 CCDS55770.1 ARL2 gene_id:402|Hs108|chr11 ( 157) 277 66.0 1.4e-11 CCDS68172.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 154) 274 65.4 2.1e-11 CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5 ( 244) 270 64.7 5.2e-11 CCDS73004.1 ARL8A gene_id:127829|Hs108|chr1 ( 147) 267 63.9 5.4e-11 >>CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 (201 aa) initn: 1307 init1: 1307 opt: 1307 Z-score: 1459.4 bits: 276.9 E(32554): 5.7e-75 Smith-Waterman score: 1307; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201) 10 20 30 40 50 60 pF1KB8 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS63 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 GISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS63 GISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 PLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS63 PLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMIL 130 140 150 160 170 180 190 200 pF1KB8 KRRKSLKQKKKRTGDLRSCEV ::::::::::::::::::::: CCDS63 KRRKSLKQKKKRTGDLRSCEV 190 200 >>CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 (192 aa) initn: 1245 init1: 1245 opt: 1245 Z-score: 1391.1 bits: 264.2 E(32554): 3.7e-71 Smith-Waterman score: 1245; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192) 10 20 30 40 50 60 pF1KB8 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS25 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 GISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS25 GISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 PLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS25 PLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMIL 130 140 150 160 170 180 190 200 pF1KB8 KRRKSLKQKKKRTGDLRSCEV :::::::::::: CCDS25 KRRKSLKQKKKR 190 >>CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 (200 aa) initn: 918 init1: 918 opt: 921 Z-score: 1032.4 bits: 197.9 E(32554): 3.5e-51 Smith-Waterman score: 921; 69.5% identity (91.6% similar) in 190 aa overlap (3-192:10-199) 10 20 30 40 50 pF1KB8 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIK .: ::. .:::.:::.:::: ::::::::::.:::::::::: :::::::: CCDS53 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB8 LSNGTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTK .. :..: .. ::::::::::::::::::.::::::..:::::::.:.:::::::::.:. CCDS53 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB8 FAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMD ..::::.:.:..:::::: .:: ..:::: ::. :: .: .:.::.:::::.:: ::.. CCDS53 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE 130 140 150 160 170 180 180 190 200 pF1KB8 KLYEMILKRRKSLKQKKKRTGDLRSCEV ::..::.:::: :.:.::. CCDS53 KLHDMIIKRRKMLRQQKKKR 190 200 >>CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 (201 aa) initn: 770 init1: 770 opt: 770 Z-score: 865.4 bits: 167.0 E(32554): 7e-42 Smith-Waterman score: 770; 59.0% identity (85.6% similar) in 188 aa overlap (5-192:13-200) 10 20 30 40 50 pF1KB8 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKI :: . ::.::.:..::::::::..::::::.:::..::: ::::::: CCDS11 MGNHLTEMAPTASSFLPHFQALHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKI 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB8 KLSNGTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVT .. : ..::. . :::::::::::::.::.: :::...:::.....::::::.:::... CCDS11 RVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRIS 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB8 KFAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGM . ..:::.:.::.::::: : .: .::.::.::..:: :: ::: :. : :: .:. CCDS11 RASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGL 130 140 150 160 170 180 180 190 200 pF1KB8 DKLYEMILKRRKSLKQKKKRTGDLRSCEV ..::::::::.:. . ::: CCDS11 ERLYEMILKRKKAARGGKKRR 190 200 >>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 (175 aa) initn: 524 init1: 283 opt: 527 Z-score: 597.4 bits: 117.2 E(32554): 5.9e-27 Smith-Waterman score: 527; 45.7% identity (76.6% similar) in 175 aa overlap (1-175:1-169) 10 20 30 40 50 60 pF1KB8 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAK ::.. :.: . . ..:.:::::.:::::.::.::... :.:.::.:::.: . : : CCDS96 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETV-----TYK 10 20 30 40 50 70 80 90 100 110 120 pF1KB8 GISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGT ... . ::::::.:.::::. : :.:.:.::: .: ::..::. :::.. . : . . CCDS96 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA 60 70 80 90 100 110 130 140 150 160 170 180 pF1KB8 PLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMIL .:..::::::: .. ::...:.: . : ...:::.:: :.:: ::. : CCDS96 IILIFANKQDLPDAMKPHEIQEKLGLTR-IRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 120 130 140 150 160 170 190 200 pF1KB8 KRRKSLKQKKKRTGDLRSCEV CCDS96 S >>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 (181 aa) initn: 538 init1: 292 opt: 525 Z-score: 595.0 bits: 116.8 E(32554): 8.1e-27 Smith-Waterman score: 525; 46.4% identity (76.0% similar) in 183 aa overlap (2-184:6-181) 10 20 30 40 50 pF1KB8 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSN ::. ... . . ..:.:.:::.:::::.::.::..:.:.:.::::::.: .. .: CCDS87 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB8 GTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAE :: ::::::.:.::::. : . :.:.:.:::: : .:..::. :: .. : CCDS87 -----ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE 70 80 90 100 110 120 130 140 150 160 170 pF1KB8 NQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLY . . :::.:::::::... .::: .:.:: : ....: .:: :.:: ::.: : CCDS87 LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWLA 120 130 140 150 160 170 180 190 200 pF1KB8 EMILKRRKSLKQKKKRTGDLRSCEV .. :: .: CCDS87 NQ-LKNKK 180 >>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 (181 aa) initn: 509 init1: 292 opt: 523 Z-score: 592.8 bits: 116.4 E(32554): 1.1e-26 Smith-Waterman score: 523; 46.0% identity (75.4% similar) in 187 aa overlap (1-183:1-181) 10 20 30 40 50 pF1KB8 MGNISSNI--SAF--QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSN :::: .:. . : . ..:.:.:::.:::::.::.::..:.:.:.::::::.: .. .: CCDS15 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB8 GTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAE :: ::::::.:.::::. : . :.:.:.:::: : .:..::. :: .. : CCDS15 -----ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE 70 80 90 100 110 120 130 140 150 160 170 pF1KB8 NQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLY . . :::.:::::::... .::: .:.:: : ....: .:: :.:: ::.: : CCDS15 LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWLS 120 130 140 150 160 170 180 190 200 pF1KB8 EMILKRRKSLKQKKKRTGDLRSCEV ... ... CCDS15 NQLRNQK 180 >>CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 (180 aa) initn: 506 init1: 289 opt: 519 Z-score: 588.4 bits: 115.6 E(32554): 1.9e-26 Smith-Waterman score: 519; 46.3% identity (76.8% similar) in 177 aa overlap (6-182:10-180) 10 20 30 40 50 pF1KB8 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSN : : . ....:.:.:::.:::::.::.::..:.:.:.::::::.: .. .: CCDS34 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB8 GTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAE : ::::::.:.::::. : . :.:.:.:::: : .:..:. ::.:. . : CCDS34 -----ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE 70 80 90 100 110 120 130 140 150 160 170 pF1KB8 NQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLY . . :::.:::::.:...::.:. .:.:..: . :..:: .:: : :: .:.: : CCDS34 LRDAVLLVFANKQDMPNAMPVSELTDKLGLQHL-RSRTWYVQATCATQGTGLYDGLDWLS 120 130 140 150 160 170 180 190 200 pF1KB8 EMILKRRKSLKQKKKRTGDLRSCEV . . :: CCDS34 HELSKR 180 >>CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 (192 aa) initn: 516 init1: 353 opt: 516 Z-score: 584.7 bits: 115.0 E(32554): 3e-26 Smith-Waterman score: 516; 41.1% identity (76.8% similar) in 185 aa overlap (1-185:1-181) 10 20 30 40 50 60 pF1KB8 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAK ::...:. .. ....::::::::.:.::.::. . ..:.::::::.: :.: . CCDS31 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELE----R 10 20 30 40 50 70 80 90 100 110 120 pF1KB8 GISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGT ..: ::::::::.: .: : . :::..:::::.: .::::.. ..... : . ... CCDS31 NLSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNV 60 70 80 90 100 110 130 140 150 160 170 180 pF1KB8 PLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMIL :....:::::.: .: . .: ... ...: ...::: ::. ::::..:. :: .. CCDS31 PVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVK 120 130 140 150 160 170 190 200 pF1KB8 KRRKSLKQKKKRTGDLRSCEV .. :: CCDS31 SHMKSRGDTLAFFKQN 180 190 >>CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 (180 aa) initn: 492 init1: 271 opt: 503 Z-score: 570.7 bits: 112.3 E(32554): 1.8e-25 Smith-Waterman score: 503; 45.7% identity (74.2% similar) in 186 aa overlap (1-182:1-180) 10 20 30 40 50 pF1KB8 MG-NISSNISAF---QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSN :: .::: .: . ....:.:.:::.:::::.::.::..:.:.:.::::::.: .. .: CCDS28 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB8 GTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAE : ::::::...::::: : . :.:.:.:::: : .:..:. ::.:. : CCDS28 -----ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDE 70 80 90 100 110 120 130 140 150 160 170 pF1KB8 NQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLY . . ::..:::::::... ..:. .:.:. : :..:: .:: : :: ::.: : CCDS28 LRDAVLLLFANKQDLPNAMAISEMTDKLGLQSL-RNRTWYVQATCATQGTGLYEGLDWLS 120 130 140 150 160 170 180 190 200 pF1KB8 EMILKRRKSLKQKKKRTGDLRSCEV . . :: CCDS28 NELSKR 180 201 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 16:53:45 2016 done: Fri Nov 4 16:53:45 2016 Total Scan time: 1.720 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]