Result of FASTA (ccds) for pF1KB8988
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8988, 388 aa
  1>>>pF1KB8988 388 - 388 aa - 388 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1071+/-0.000803; mu= 1.5643+/- 0.048
 mean_var=247.9370+/-50.117, 0's: 0 Z-trim(117.0): 53  B-trim: 4 in 1/51
 Lambda= 0.081452
 statistics sampled from 17619 (17672) to 17619 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.543), width:  16
 Scan time:  3.400

The best scores are:                                      opt bits E(32554)
CCDS5977.1 SOX7 gene_id:83595|Hs108|chr8           ( 388) 2730 333.2 2.5e-91
CCDS6159.1 SOX17 gene_id:64321|Hs108|chr8          ( 414)  847 111.9 1.1e-24
CCDS13552.1 SOX18 gene_id:54345|Hs108|chr20        ( 384)  559 78.0 1.6e-14
CCDS11689.1 SOX9 gene_id:6662|Hs108|chr17          ( 509)  461 66.6 5.7e-11


>>CCDS5977.1 SOX7 gene_id:83595|Hs108|chr8                (388 aa)
 initn: 2730 init1: 2730 opt: 2730  Z-score: 1753.1  bits: 333.2 E(32554): 2.5e-91
Smith-Waterman score: 2730; 100.0% identity (100.0% similar) in 388 aa overlap (1-388:1-388)

               10        20        30        40        50        60
pF1KB8 MASLLGAYPWPEGLECPALDAELSDGQSPPAVPRPPGDKGSESRIRRPMNAFMVWAKDER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MASLLGAYPWPEGLECPALDAELSDGQSPPAVPRPPGDKGSESRIRRPMNAFMVWAKDER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KRLAVQNPDLHNAELSKMLGKSWKALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KRLAVQNPDLHNAELSKMLGKSWKALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 QAKRLCKRVDPGFLLSSLSRDQNALPEKRSGSRGALGEKEDRGEYSPGTALPSLRGCYHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QAKRLCKRVDPGFLLSSLSRDQNALPEKRSGSRGALGEKEDRGEYSPGTALPSLRGCYHE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GPAGGGGGGTPSSVDTYPYGLPTPPEMSPLDVLEPEQTFFSSPCQEEHGHPRRIPHLPGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GPAGGGGGGTPSSVDTYPYGLPTPPEMSPLDVLEPEQTFFSSPCQEEHGHPRRIPHLPGH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 PYSPEYAPSPLHCSHPLGSLALGQSPGVSMMSPVPGCPPSPAYYSPATYHPLHSNLQAHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PYSPEYAPSPLHCSHPLGSLALGQSPGVSMMSPVPGCPPSPAYYSPATYHPLHSNLQAHL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 GQLSPPPEHPGFDALDQLSQVELLGDMDRNEFDQYLNTPGHPDSATGAMALSGHVPVSQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GQLSPPPEHPGFDALDQLSQVELLGDMDRNEFDQYLNTPGHPDSATGAMALSGHVPVSQV
              310       320       330       340       350       360

              370       380        
pF1KB8 TPTGPTETSLISVLADATATYYNSYSVS
       ::::::::::::::::::::::::::::
CCDS59 TPTGPTETSLISVLADATATYYNSYSVS
              370       380        

>>CCDS6159.1 SOX17 gene_id:64321|Hs108|chr8               (414 aa)
 initn: 775 init1: 525 opt: 847  Z-score: 556.8  bits: 111.9 E(32554): 1.1e-24
Smith-Waterman score: 847; 43.3% identity (61.9% similar) in 404 aa overlap (5-385:27-411)

                                     10        20        30        
pF1KB8                       MASLLGAYPWPEGLECPALDAELSDGQSPPAVPRPPGD
                                 ::  :: :.:  :  : ... :..:     : : 
CCDS61 MSSPDAGYASDDQSQTQSALPAVMAGLGPCPWAESLS-PIGDMKVK-GEAPANSGAPAGA
               10        20        30         40         50        

       40           50        60        70        80        90     
pF1KB8 KG---SESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALTLSQKRPYV
        :   .::::::::::::::::::::::: :::::::::::::::::::::::..:::.:
CCDS61 AGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFV
       60        70        80        90       100       110        

         100       110       120       130       140         150   
pF1KB8 DEAERLRLQHMQDYPNYKYRPRRKKQAKRLCKRVDPGFLLSSLSRDQNAL--PEKRSGSR
       .::::::.:::::.:::::::::.::.::: :::. :::  .:.. : :   ::    . 
CCDS61 EEAERLRVQHMQDHPNYKYRPRRRKQVKRL-KRVEGGFL-HGLAEPQAAALGPEGGRVAM
      120       130       140        150        160       170      

           160       170         180       190       200       210 
pF1KB8 GALGEKEDRGEYSPGTAL--PSLRGCYHEGPAGGGGGGTPSSVDTYPYGLPTPPEMSPLD
        .:: .  .  .  :  :  : . : :..  .     :.:  .: ::  :::: . ::::
CCDS61 DGLGLQFPEQGFPAGPPLLPPHMGGHYRDCQSL----GAPP-LDGYP--LPTP-DTSPLD
        180       190       200           210          220         

             220           230              240       250       260
pF1KB8 VLEPEQTFFSSP----CQEEHGHPRRI-------PHLPGHPYSPEYAPSPLHCSHPLGSL
        ..:. .::..:    :     .           :. :. :. :. .: :   : : : :
CCDS61 GVDPDPAFFAAPMPGDCPAAGTYSYAQVSDYAGPPEPPAGPMHPRLGPEPAGPSIP-GLL
      230       240       250       260       270       280        

                 270       280       290       300        310      
pF1KB8 ALGQSPGV---SMMSPVPGCPPSPAYYSPATYHPLHSNLQAHLGQLSPPPEH-PGFDALD
       :  ..  :   .: ::  :   .  .     ..  :..     :: :::::  :  :. :
CCDS61 APPSALHVYYGAMGSPGAGGGRGFQMQPQHQHQHQHQHHPPGPGQPSPPPEALPCRDGTD
       290       300       310       320       330       340       

        320       330       340       350       360       370      
pF1KB8 QLSQVELLGDMDRNEFDQYLNTPGHPDSATGAMALSGHVPVSQVTPTGPTETSLISVLAD
         . .::::..::.::.:::.   .:. .   .  .::   : :.    .. .. ::..:
CCDS61 PSQPAELLGEVDRTEFEQYLHFVCKPEMG---LPYQGHD--SGVN-LPDSHGAISSVVSD
       350       360       370          380          390       400 

         380        
pF1KB8 AT-ATYYNSYSVS
       :. :.:: .:   
CCDS61 ASSAVYYCNYPDV
             410    

>>CCDS13552.1 SOX18 gene_id:54345|Hs108|chr20             (384 aa)
 initn: 745 init1: 480 opt: 559  Z-score: 374.4  bits: 78.0 E(32554): 1.6e-14
Smith-Waterman score: 782; 41.6% identity (58.2% similar) in 409 aa overlap (2-388:30-383)

                                           10        20         30 
pF1KB8                             MASLLGAYPWPEGLECPALDAELSDGQ-SPPA
                                    :.  :    : .:  ::  :   . : ::: 
CCDS13 MQRSPPGYGAQDDPPARRDCAWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPR
               10        20        30        40        50        60

                    40             50        60        70        80
pF1KB8 VPRP------PGDKG-----SESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLG
        :.:      :. .:     .::::::::::::::::::::::: :::::::: ::::::
CCDS13 SPEPGRYGLSPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLG
               70        80        90       100       110       120

               90       100       110       120       130       140
pF1KB8 KSWKALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQAKRLCKRVDPGFLLSSLSR
       :.:: :. ..:::.:.::::::.::..:.:::::::::::::..  .:..::.:: .:. 
CCDS13 KAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARK-ARRLEPGLLLPGLAP
              130       140       150       160        170         

              150       160       170       180       190       200
pF1KB8 DQNALPEKRSGSRGALGEKEDRGEYSPGTALPSLRGCYHEGPAGGGGGGTPSSVDTYPYG
        :   ::   .. :                  : :. ..: :        : ...    :
CCDS13 PQPP-PEPFPAASG------------------SARA-FRELP--------PLGAEFDGLG
     180        190                          200               210 

              210        220       230       240       250         
pF1KB8 LPTPPEMSPLDVLEP-EQTFFSSPCQEEHGHPRRIPHLPGHPYSPEYAPSPLHCSHPLGS
       :::: : :::: ::: : .::  :   :    :        :.   :::. :    : : 
CCDS13 LPTP-ERSPLDGLEPGEAAFFPPPAAPEDCALR--------PFRAPYAPTELS-RDPGGC
              220       230       240               250        260 

     260       270       280           290       300       310     
pF1KB8 LALGQSPGVSMMSPVPGCPPSPAYY----SPATYHPLHSNLQAHLGQLSPPPEHPGFDAL
          :   . .. .  :. : .  ::    .:. : :         : :::::: : ... 
CCDS13 Y--GAPLAEALRTAPPAAPLAGLYYGTLGTPGPY-P---------GPLSPPPEAPPLESA
               270       280       290                 300         

         320        330        340       350       360          370
pF1KB8 DQLSQV-ELLGDMDRNEFDQYLN-TPGHPDSATGAMALSGHVPVSQVTPTG---PTETSL
       . :. . .: .:.: .::::::: .  .:: : :   :  :: .... : .   : :.::
CCDS13 EPLGPAADLWADVDLTEFDQYLNCSRTRPD-APG---LPYHVALAKLGPRAMSCPEESSL
     310       320       330        340          350       360     

              380         
pF1KB8 ISVLADATATYYNSYSVS 
       ::.:.::... : :  .: 
CCDS13 ISALSDASSAVYYSACISG
         370       380    

>>CCDS11689.1 SOX9 gene_id:6662|Hs108|chr17               (509 aa)
 initn: 479 init1: 383 opt: 461  Z-score: 310.5  bits: 66.6 E(32554): 5.7e-11
Smith-Waterman score: 461; 32.3% identity (54.7% similar) in 322 aa overlap (30-341:90-406)

                10        20        30        40        50         
pF1KB8  MASLLGAYPWPEGLECPALDAELSDGQSPPAVPRPPGDKGSESRIRRPMNAFMVWAKDE
                                     :   :  :.. .. ...::::::::::.  
CCDS11 LKKESEEDKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAA
      60        70        80        90       100       110         

      60        70        80        90       100       110         
pF1KB8 RKRLAVQNPDLHNAELSKMLGKSWKALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRK
       :..:: : : :::::::: ::: :. :. :.:::.:.::::::.:: .:.:.:::.:::.
CCDS11 RRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRR
     120       130       140       150       160       170         

     120       130       140         150       160       170       
pF1KB8 KQAKRLCKRVDPGFLLSSLSRDQ--NALPEKRSGSRGALGEKEDRGEYSPGTALPSLRGC
       :..:    ... .   . .: .   .::      : ....: .. ::.:  .  :     
CCDS11 KSVKNGQAEAEEATEQTHISPNAIFKALQADSPHSSSGMSEVHSPGEHSGQSQGPPTPPT
     180       190       200       210       220       230         

       180       190       200        210       220       230      
pF1KB8 YHEGPAGGGGGGTPSSVDTYPYGLPTPP-EMSPLDVLEPEQTFFSSPCQEEHGHPRRIPH
         .  .  : .         : :   :: ..  .:. :  .  .:.   :     .   .
CCDS11 TPKTDVQPGKADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISN--IETFDVNEFDQY
     240       250       260       270       280         290       

          240        250       260        270         280          
pF1KB8 LP--GHPYSPE-YAPSPLHCSHPLGSLA-LGQSPGVSMMSP--VPGCPPS-PAYYSPATY
       ::  :::  :  ..      :. ..: :    : :   ::   .:  ::. :    ::  
CCDS11 LPPNGHPGVPATHGQVTYTGSYGISSTAATPASAGHVWMSKQQAPPPPPQQPPQAPPAPQ
       300       310       320       330       340       350       

     290       300       310       320       330       340         
pF1KB8 HPLHSNLQAHLGQLSPPPEHPGFDALDQLSQVELLGDMDRNEFDQYLNTPGHPDSATGAM
        : . .  :   : . ::..:   .:  ::.    :. .:...     .:.:        
CCDS11 APPQPQ-AAPPQQPAAPPQQPQAHTLTTLSSEP--GQSQRTHIKTEQLSPSHYSEQQQHS
       360        370       380         390       400       410    

     350       360       370       380                             
pF1KB8 ALSGHVPVSQVTPTGPTETSLISVLADATATYYNSYSVS                     
                                                                   
CCDS11 PQQIAYSPFNLPHYSPSYPPITRSQYDYTDHQNSSSYYSHAAGQGTGLYSTFTYMNPAQR
          420       430       440       450       460       470    




388 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:52:00 2016 done: Fri Nov  4 16:52:00 2016
 Total Scan time:  3.400 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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