Result of FASTA (omim) for pF1KB8980
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8980, 376 aa
  1>>>pF1KB8980 376 - 376 aa - 376 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.5036+/-0.000329; mu= 4.9659+/- 0.021
 mean_var=229.2237+/-45.931, 0's: 0 Z-trim(123.1): 196  B-trim: 36 in 1/58
 Lambda= 0.084712
 statistics sampled from 42104 (42357) to 42104 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.497), width:  16
 Scan time:  9.580

The best scores are:                                      opt bits E(85289)
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 2513 319.3 9.1e-87
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356)  866 118.0 3.4e-26
XP_005257332 (OMIM: 142967) PREDICTED: homeobox pr ( 247)  457 67.9 2.9e-11
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  401 61.2 5.1e-09
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  401 61.2 5.1e-09
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  401 61.2 5.1e-09
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  401 61.2 5.1e-09
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  401 61.2 5.1e-09
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  401 61.2 5.1e-09
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432)  401 61.2 5.1e-09
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  401 61.2 5.1e-09
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  394 60.4 9.3e-09
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  394 60.4 9.3e-09
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  394 60.4 9.3e-09
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  394 60.4 9.3e-09
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  394 60.4 9.3e-09
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  394 60.4 9.3e-09
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  394 60.4 9.3e-09
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430)  360 56.2 1.6e-07
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299)  356 55.6 1.8e-07
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358)  356 55.7   2e-07
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358)  356 55.7   2e-07
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  356 55.7 2.3e-07
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  356 55.7 2.3e-07
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  356 55.7 2.3e-07
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431)  356 55.7 2.3e-07
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  356 55.7 2.3e-07
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  356 55.7 2.3e-07
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488)  356 55.8 2.5e-07
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  356 55.9 2.8e-07
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  356 55.9 2.8e-07
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  356 55.9 2.8e-07
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  356 55.9 2.8e-07
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  356 55.9 2.8e-07
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  356 55.9 2.8e-07
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  356 55.9 2.8e-07
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  356 55.9 2.8e-07
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255)  346 54.3 3.7e-07
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270)  334 52.9 1.1e-06
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251)  330 52.3 1.4e-06
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269)  325 51.8 2.3e-06
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  324 51.6 2.4e-06
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  324 51.6 2.4e-06
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217)  312 50.1 5.8e-06
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320)  314 50.5 6.5e-06
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301)  313 50.3 6.7e-06
NP_663632 (OMIM: 616542) GS homeobox 1 [Homo sapie ( 264)  310 49.9 7.9e-06
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222)  307 49.5   9e-06
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233)  306 49.4   1e-05
NP_573574 (OMIM: 616253) GS homeobox 2 [Homo sapie ( 304)  303 49.1 1.6e-05


>>NP_006726 (OMIM: 604685,612290) homeobox protein Hox-A  (376 aa)
 initn: 2513 init1: 2513 opt: 2513  Z-score: 1678.7  bits: 319.3 E(85289): 9.1e-87
Smith-Waterman score: 2513; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)

               10        20        30        40        50        60
pF1KB8 MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 DLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPTVPNCLST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPTVPNCLST
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 MGQNCGAGLNNDSPEALEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDSPVDISADSLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MGQNCGAGLNNDSPEALEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDSPVDISADSLD
              310       320       330       340       350       360

              370      
pF1KB8 FFTDTLTTIDLQHLNY
       ::::::::::::::::
NP_006 FFTDTLTTIDLQHLNY
              370      

>>NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [Homo  (356 aa)
 initn: 921 init1: 716 opt: 866  Z-score: 591.2  bits: 118.0 E(85289): 3.4e-26
Smith-Waterman score: 1037; 50.3% identity (67.5% similar) in 378 aa overlap (1-372:1-354)

               10        20        30        40        50        60
pF1KB8 MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN
       ::.::::::::::::::::::::::: : .:::.:::: :::      :::::::.:::.
NP_002 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPP---PPPFEQTFPSLQ
               10        20        30        40           50       

                 70        80        90        100       110       
pF1KB8 PGSHP--RHGAGGRPKPSPAGSRGSPVPAGALQP-PEYPWMKEKKAAKKTALLPAAAAAA
       ::.    :  .  : . .::     : :  :  : ::.:::::::.::: .   .. . :
NP_002 PGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPA
        60        70        80        90       100       110       

       120       130       140       150       160       170       
pF1KB8 TAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA
       ..:. . .  :  ..: . ...:::.::::::::::::::::::::::::::::::::::
NP_002 ASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA
       120       130       140       150       160       170       

       180       190       200       210        220       230      
pF1KB8 ALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCK-SLEDSEKVEEDEEEKTLFEQA
       :::::::::::::::::::::::::: .:  ..:  :  .:::   . .  ::      :
NP_002 ALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALED---ICDPAEEP-----A
       180       190       200       210       220                 

        240       250       260       270       280       290      
pF1KB8 LSVSGALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPTVPN
        : .:    : ..  .      . .:.. ..: . . :           ...  . . :.
NP_002 ASPGGPSASRAAW--EACCHPPEVVPGALSADPRPLAV-----------RLEGAGASSPG
     230       240         250       260                  270      

         300       310        320       330       340       350    
pF1KB8 C-LSTMGQNCGAGLNNDSPEA-LEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDSPVDI
       : :   :    . : .:   .  . : : :.. :..::::::: ..:::: ::::::: .
NP_002 CALRGAGGLEPGPLPEDVFSGRQDSPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPF
        280       290       300       310       320       330      

          360       370      
pF1KB8 SADSLDFFTDTLTTIDLQHLNY
       : . :::::.:: .::::    
NP_002 SEEELDFFTSTLCAIDLQFP  
        340       350        

>>XP_005257332 (OMIM: 142967) PREDICTED: homeobox protei  (247 aa)
 initn: 655 init1: 450 opt: 457  Z-score: 323.1  bits: 67.9 E(85289): 2.9e-11
Smith-Waterman score: 628; 49.0% identity (66.7% similar) in 243 aa overlap (133-372:24-245)

            110       120       130       140       150       160  
pF1KB8 AAKKTALLPAAAAAATAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEF
                                     : . ...:::.:::::::::::::::::::
XP_005        MLCPDPGRGCRLERERRKPKSNGLGLPEAGGGGARRLRTAYTNTQLLELEKEF
                      10        20        30        40        50   

            170       180       190       200       210        220 
pF1KB8 HFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCK-SLEDSE
       ::::::::::::::::::::::::::::::::::::::::: .:  ..:  :  .:::  
XP_005 HFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALED--
            60        70        80        90       100       110   

             230       240       250       260       270       280 
pF1KB8 KVEEDEEEKTLFEQALSVSGALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNE
        . .  ::      : : .:    : ..  .      . .:.. ..: . . :       
XP_005 -ICDPAEEP-----AASPGGPSASRAAW--EACCHPPEVVPGALSADPRPLAV-------
                   120       130         140       150             

             290        300       310        320       330         
pF1KB8 KNLKHFQHQSPTVPNC-LSTMGQNCGAGLNNDSPEA-LEVPSLQDFSVFSTDSCLQLSDA
           ...  . . :.: :   :    . : .:   .  . : : :.. :..::::::: .
XP_005 ----RLEGAGASSPGCALRGAGGLEPGPLPEDVFSGRQDSPFLPDLNFFAADSCLQLSGG
            160       170       180       190       200       210  

     340       350       360       370      
pF1KB8 VSPSLPGSLDSPVDISADSLDFFTDTLTTIDLQHLNY
       .:::: ::::::: .: . :::::.:: .::::    
XP_005 LSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP  
            220       230       240         

>>XP_011509368 (OMIM: 142980) PREDICTED: homeobox protei  (432 aa)
 initn: 575 init1: 359 opt: 401  Z-score: 283.0  bits: 61.2 E(85289): 5.1e-09
Smith-Waterman score: 435; 44.6% identity (66.9% similar) in 157 aa overlap (49-205:121-256)

       20        30        40        50        60        70        
pF1KB8 AECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRHGAGGRPKPSPA
                                     :::     :.: :.: : . .:: :  .: 
XP_011 MRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPP-----PTLPPSS-PTNPGGGVPAKKPK
              100       110       120            130        140    

       80        90       100       110       120       130        
pF1KB8 GSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLEIADG
       :. ..   .....   .:::::..  .:                  .: .  :: :  . 
XP_011 GGPNASSSSATISKQIFPWMKESRQNSKQK---------------NSCATAGESCEDKSP
          150       160       170                      180         

      140       150       160       170       180       190        
pF1KB8 SGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH
        : .:.:.:::::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.
XP_011 PGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKY
     190       200       210       220       230       240         

      200       210       220       230       240       250        
pF1KB8 KRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVSGALLEREGYTFQQNALSQ
       :.. . :                                                     
XP_011 KKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNM
     250       260       270       280       290       300         

>>XP_005246567 (OMIM: 142980) PREDICTED: homeobox protei  (432 aa)
 initn: 575 init1: 359 opt: 401  Z-score: 283.0  bits: 61.2 E(85289): 5.1e-09
Smith-Waterman score: 435; 44.6% identity (66.9% similar) in 157 aa overlap (49-205:121-256)

       20        30        40        50        60        70        
pF1KB8 AECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRHGAGGRPKPSPA
                                     :::     :.: :.: : . .:: :  .: 
XP_005 MRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPP-----PTLPPSS-PTNPGGGVPAKKPK
              100       110       120            130        140    

       80        90       100       110       120       130        
pF1KB8 GSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLEIADG
       :. ..   .....   .:::::..  .:                  .: .  :: :  . 
XP_005 GGPNASSSSATISKQIFPWMKESRQNSKQK---------------NSCATAGESCEDKSP
          150       160       170                      180         

      140       150       160       170       180       190        
pF1KB8 SGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH
        : .:.:.:::::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.
XP_005 PGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKY
     190       200       210       220       230       240         

      200       210       220       230       240       250        
pF1KB8 KRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVSGALLEREGYTFQQNALSQ
       :.. . :                                                     
XP_005 KKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNM
     250       260       270       280       290       300         

>>XP_011509367 (OMIM: 142980) PREDICTED: homeobox protei  (432 aa)
 initn: 575 init1: 359 opt: 401  Z-score: 283.0  bits: 61.2 E(85289): 5.1e-09
Smith-Waterman score: 435; 44.6% identity (66.9% similar) in 157 aa overlap (49-205:121-256)

       20        30        40        50        60        70        
pF1KB8 AECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRHGAGGRPKPSPA
                                     :::     :.: :.: : . .:: :  .: 
XP_011 MRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPP-----PTLPPSS-PTNPGGGVPAKKPK
              100       110       120            130        140    

       80        90       100       110       120       130        
pF1KB8 GSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLEIADG
       :. ..   .....   .:::::..  .:                  .: .  :: :  . 
XP_011 GGPNASSSSATISKQIFPWMKESRQNSKQK---------------NSCATAGESCEDKSP
          150       160       170                      180         

      140       150       160       170       180       190        
pF1KB8 SGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH
        : .:.:.:::::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.
XP_011 PGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKY
     190       200       210       220       230       240         

      200       210       220       230       240       250        
pF1KB8 KRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVSGALLEREGYTFQQNALSQ
       :.. . :                                                     
XP_011 KKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNM
     250       260       270       280       290       300         

>>XP_005246566 (OMIM: 142980) PREDICTED: homeobox protei  (432 aa)
 initn: 575 init1: 359 opt: 401  Z-score: 283.0  bits: 61.2 E(85289): 5.1e-09
Smith-Waterman score: 435; 44.6% identity (66.9% similar) in 157 aa overlap (49-205:121-256)

       20        30        40        50        60        70        
pF1KB8 AECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRHGAGGRPKPSPA
                                     :::     :.: :.: : . .:: :  .: 
XP_005 MRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPP-----PTLPPSS-PTNPGGGVPAKKPK
              100       110       120            130        140    

       80        90       100       110       120       130        
pF1KB8 GSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLEIADG
       :. ..   .....   .:::::..  .:                  .: .  :: :  . 
XP_005 GGPNASSSSATISKQIFPWMKESRQNSKQK---------------NSCATAGESCEDKSP
          150       160       170                      180         

      140       150       160       170       180       190        
pF1KB8 SGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH
        : .:.:.:::::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.
XP_005 PGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKY
     190       200       210       220       230       240         

      200       210       220       230       240       250        
pF1KB8 KRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVSGALLEREGYTFQQNALSQ
       :.. . :                                                     
XP_005 KKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNM
     250       260       270       280       290       300         

>>XP_005246570 (OMIM: 142980) PREDICTED: homeobox protei  (432 aa)
 initn: 575 init1: 359 opt: 401  Z-score: 283.0  bits: 61.2 E(85289): 5.1e-09
Smith-Waterman score: 435; 44.6% identity (66.9% similar) in 157 aa overlap (49-205:121-256)

       20        30        40        50        60        70        
pF1KB8 AECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRHGAGGRPKPSPA
                                     :::     :.: :.: : . .:: :  .: 
XP_005 MRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPP-----PTLPPSS-PTNPGGGVPAKKPK
              100       110       120            130        140    

       80        90       100       110       120       130        
pF1KB8 GSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLEIADG
       :. ..   .....   .:::::..  .:                  .: .  :: :  . 
XP_005 GGPNASSSSATISKQIFPWMKESRQNSKQK---------------NSCATAGESCEDKSP
          150       160       170                      180         

      140       150       160       170       180       190        
pF1KB8 SGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH
        : .:.:.:::::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.
XP_005 PGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKY
     190       200       210       220       230       240         

      200       210       220       230       240       250        
pF1KB8 KRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVSGALLEREGYTFQQNALSQ
       :.. . :                                                     
XP_005 KKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNM
     250       260       270       280       290       300         

>>XP_006712540 (OMIM: 142980) PREDICTED: homeobox protei  (432 aa)
 initn: 575 init1: 359 opt: 401  Z-score: 283.0  bits: 61.2 E(85289): 5.1e-09
Smith-Waterman score: 435; 44.6% identity (66.9% similar) in 157 aa overlap (49-205:121-256)

       20        30        40        50        60        70        
pF1KB8 AECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRHGAGGRPKPSPA
                                     :::     :.: :.: : . .:: :  .: 
XP_006 MRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPP-----PTLPPSS-PTNPGGGVPAKKPK
              100       110       120            130        140    

       80        90       100       110       120       130        
pF1KB8 GSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLEIADG
       :. ..   .....   .:::::..  .:                  .: .  :: :  . 
XP_006 GGPNASSSSATISKQIFPWMKESRQNSKQK---------------NSCATAGESCEDKSP
          150       160       170                      180         

      140       150       160       170       180       190        
pF1KB8 SGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH
        : .:.:.:::::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.
XP_006 PGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKY
     190       200       210       220       230       240         

      200       210       220       230       240       250        
pF1KB8 KRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVSGALLEREGYTFQQNALSQ
       :.. . :                                                     
XP_006 KKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNM
     250       260       270       280       290       300         

>>NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [Homo  (432 aa)
 initn: 575 init1: 359 opt: 401  Z-score: 283.0  bits: 61.2 E(85289): 5.1e-09
Smith-Waterman score: 435; 44.6% identity (66.9% similar) in 157 aa overlap (49-205:121-256)

       20        30        40        50        60        70        
pF1KB8 AECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRHGAGGRPKPSPA
                                     :::     :.: :.: : . .:: :  .: 
NP_008 MRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPP-----PTLPPSS-PTNPGGGVPAKKPK
              100       110       120            130        140    

       80        90       100       110       120       130        
pF1KB8 GSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLEIADG
       :. ..   .....   .:::::..  .:                  .: .  :: :  . 
NP_008 GGPNASSSSATISKQIFPWMKESRQNSKQK---------------NSCATAGESCEDKSP
          150       160       170                      180         

      140       150       160       170       180       190        
pF1KB8 SGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH
        : .:.:.:::::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.
NP_008 PGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKY
     190       200       210       220       230       240         

      200       210       220       230       240       250        
pF1KB8 KRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVSGALLEREGYTFQQNALSQ
       :.. . :                                                     
NP_008 KKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNM
     250       260       270       280       290       300         




376 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:49:31 2016 done: Fri Nov  4 16:49:32 2016
 Total Scan time:  9.580 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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