Result of FASTA (ccds) for pF1KB8959
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8959, 338 aa
  1>>>pF1KB8959 338 - 338 aa - 338 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4935+/-0.00097; mu= 11.6652+/- 0.059
 mean_var=143.4179+/-30.577, 0's: 0 Z-trim(108.6): 74  B-trim: 2 in 1/50
 Lambda= 0.107096
 statistics sampled from 10238 (10307) to 10238 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.317), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS4281.1 POU4F3 gene_id:5459|Hs108|chr5          ( 338) 2257 360.4 1.2e-99
CCDS34074.1 POU4F2 gene_id:5458|Hs108|chr4         ( 409) 1208 198.4 8.6e-51
CCDS31996.1 POU4F1 gene_id:5457|Hs108|chr13        ( 419)  996 165.6 6.4e-41
CCDS5040.1 POU3F2 gene_id:5454|Hs108|chr6          ( 443)  522 92.4 7.4e-19
CCDS33265.1 POU3F3 gene_id:5455|Hs108|chr2         ( 500)  512 90.9 2.3e-18
CCDS30679.1 POU3F1 gene_id:5453|Hs108|chr1         ( 451)  508 90.3 3.3e-18
CCDS14450.1 POU3F4 gene_id:5456|Hs108|chrX         ( 361)  496 88.3   1e-17
CCDS8431.1 POU2F3 gene_id:25833|Hs108|chr11        ( 436)  492 87.8 1.8e-17
CCDS58190.1 POU2F3 gene_id:25833|Hs108|chr11       ( 438)  492 87.8 1.8e-17
CCDS2919.1 POU1F1 gene_id:5449|Hs108|chr3          ( 291)  479 85.6 5.5e-17
CCDS46873.1 POU1F1 gene_id:5449|Hs108|chr3         ( 317)  478 85.5 6.5e-17
CCDS55655.1 POU2F1 gene_id:5451|Hs108|chr1         ( 703)  450 81.5 2.3e-15
CCDS55656.1 POU2F1 gene_id:5451|Hs108|chr1         ( 755)  450 81.5 2.4e-15
CCDS1259.2 POU2F1 gene_id:5451|Hs108|chr1          ( 766)  450 81.5 2.4e-15
CCDS34391.1 POU5F1 gene_id:5460|Hs108|chr6         ( 360)  444 80.3 2.7e-15
CCDS55274.1 POU5F1B gene_id:5462|Hs108|chr8        ( 359)  430 78.1 1.2e-14
CCDS31803.1 POU6F1 gene_id:5463|Hs108|chr12        ( 301)  386 71.2 1.2e-12
CCDS81691.1 POU6F1 gene_id:5463|Hs108|chr12        ( 611)  386 71.5 1.9e-12
CCDS55103.1 POU6F2 gene_id:11281|Hs108|chr7        ( 655)  381 70.8 3.5e-12


>>CCDS4281.1 POU4F3 gene_id:5459|Hs108|chr5               (338 aa)
 initn: 2257 init1: 2257 opt: 2257  Z-score: 1902.3  bits: 360.4 E(32554): 1.2e-99
Smith-Waterman score: 2257; 100.0% identity (100.0% similar) in 338 aa overlap (1-338:1-338)

               10        20        30        40        50        60
pF1KB8 MMAMNSKQPFGMHPVLQEPKFSSLHSGSEAMRRVCLPAPQLQGNIFGSFDESLLARAEAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MMAMNSKQPFGMHPVLQEPKFSSLHSGSEAMRRVCLPAPQLQGNIFGSFDESLLARAEAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AAVDIVSHGKNHPFKPDATYHTMSSVPCTSTSSTVPISHPAALTSHPHHAVHQGLEGDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AAVDIVSHGKNHPFKPDATYHTMSSVPCTSTSSTVPISHPAALTSHPHHAVHQGLEGDLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EHISPTLSVSGLGAPEHSVMPAQIHPHHLGAMGHLHQAMGMSHPHTVAPHSAMPACLSDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EHISPTLSVSGLGAPEHSVMPAQIHPHHLGAMGHLHQAMGMSHPHTVAPHSAMPACLSDV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 ESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQSTICRFESLTLSHNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQSTICRFESLTLSHNN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 MIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPS
              250       260       270       280       290       300

              310       320       330        
pF1KB8 SEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSAVH
       ::::::::::::::::::::::::::::::::::::::
CCDS42 SEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSAVH
              310       320       330        

>>CCDS34074.1 POU4F2 gene_id:5458|Hs108|chr4              (409 aa)
 initn: 1377 init1: 979 opt: 1208  Z-score: 1025.3  bits: 198.4 E(32554): 8.6e-51
Smith-Waterman score: 1506; 70.7% identity (86.3% similar) in 335 aa overlap (22-336:78-407)

                        10        20        30        40        50 
pF1KB8          MMAMNSKQPFGMHPVLQEPKFSSLHSGSEAMRRVCLPAPQLQGNIFGSFDE
                                     ::  .:::::::.:::.:   .::::..::
CCDS34 SSSSNAGGGGGGGGGGGGGGGRSSSSSSSGSSGGGGSEAMRRACLPTPP--SNIFGGLDE
        50        60        70        80        90         100     

              60        70                80        90         100 
pF1KB8 SLLARAEALAAVDIVSHGKNH--------PFKPDATYHTMSSVPCTS--TSSTVPISHPA
       ::::::::::::::::..:.:        :::::::::::...::::  .::.::::::.
CCDS34 SLLARAEALAAVDIVSQSKSHHHHPPHHSPFKPDATYHTMNTIPCTSAASSSSVPISHPS
         110       120       130       140       150       160     

                      110       120       130       140       150  
pF1KB8 ALTS---------HPHHAVHQGLEGDLLEHISPTLSVSGLGAPEHSVMPAQIHPHHLGAM
       ::..         : ::  ::.:::.::::.:: :.......:. .:. .  :  :...:
CCDS34 ALAGTHHHHHHHHHHHHQPHQALEGELLEHLSPGLALGAMAGPDGAVVSTPAHAPHMATM
         170       180       190       200       210       220     

             160       170       180       190       200       210 
pF1KB8 GHLHQA-MGMSHPHTVAPHSAMPACLSDVESDPRELEAFAERFKQRRIKLGVTQADVGAA
       . .::: ..:.: : .  : .   :.:::..:::.:::::::::::::::::::::::.:
CCDS34 NPMHQAALSMAHAHGLPSHMG---CMSDVDADPRDLEAFAERFKQRRIKLGVTQADVGSA
         230       240          250       260       270       280  

             220       230       240       250       260       270 
pF1KB8 LANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNG
       :::::::::::::::::::::::::::::::::::.::::::::: ..::: .:::::::
CCDS34 LANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPILQAWLEEAEKSHREKLTKPELFNG
            290       300       310       320       330       340  

             280       290       300       310       320       330 
pF1KB8 SERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR
       .:.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AEKKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR
            350       360       370       380       390       400  

              
pF1KB8 MKYSAVH
       :::::  
CCDS34 MKYSAGI
              

>>CCDS31996.1 POU4F1 gene_id:5457|Hs108|chr13             (419 aa)
 initn: 1451 init1: 945 opt: 996  Z-score: 848.2  bits: 165.6 E(32554): 6.4e-41
Smith-Waterman score: 1223; 59.6% identity (69.4% similar) in 376 aa overlap (49-338:50-419)

       20        30        40        50        60         70       
pF1KB8 PKFSSLHSGSEAMRRVCLPAPQLQGNIFGSFDESLLARAEALAAVDI-VSHGKNHPFKPD
                                     .::.::::::::::::: ::.::.::::::
CCDS31 HKYPSLHSSSEAIRRACLPTPPLQSNLFASLDETLLARAEALAAVDIAVSQGKSHPFKPD
      20        30        40        50        60        70         

        80        90       100       110        120                
pF1KB8 ATYHTMSSVPCTSTSSTVPISHPAALTSHPHHAVHQGLE-GDLLEHIS-PTLSV------
       ::::::.:::::::: :::..:      : ::  ::.:: ::::.::: :.:..      
CCDS31 ATYHTMNSVPCTSTS-TVPLAH-----HHHHHHHHQALEPGDLLDHISSPSLALMAGAGG
      80        90        100            110       120       130   

                                            130       140          
pF1KB8 ---------------------------------------SGLGAPEHSVMPAQIHPH-HL
                                              .: :.:  ... .. ::: :.
CCDS31 AGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGGSAHPHPHM
           140       150       160       170       180       190   

     150                160          170                           
pF1KB8 GAMGHL-HQAM--------GMSHPHTVAP---HSAMPAC---------------------
        ..::: : :         :. ::  ::    :.:  :                      
CCDS31 HSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAAASAAAAVVGAA
           200       210       220       230       240       250   

            180       190       200       210       220       230  
pF1KB8 ----LSDVESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQSTICRFE
           . : ..:::::::::::::::::::::::::::.::::::::::::::::::::::
CCDS31 GLASICDSDTDPRELEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGSLSQSTICRFE
           260       270       280       290       300       310   

            240       250       260       270       280       290  
pF1KB8 SLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAY
       ::::::::::::::.:::::::::.: ::: .:::::::.:.::::::::::::::::::
CCDS31 SLTLSHNNMIALKPILQAWLEEAEGAQREKMNKPELFNGGEKKRKRTSIAAPEKRSLEAY
           320       330       340       350       360       370   

            300       310       320       330        
pF1KB8 FAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSAVH
       ::.::::::::::::::::::::::::::::::::::::::.::..
CCDS31 FAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFSATY
           380       390       400       410         

>>CCDS5040.1 POU3F2 gene_id:5454|Hs108|chr6               (443 aa)
 initn: 535 init1: 364 opt: 522  Z-score: 452.1  bits: 92.4 E(32554): 7.4e-19
Smith-Waterman score: 537; 43.2% identity (66.9% similar) in 236 aa overlap (117-332:186-412)

         90       100       110       120       130                
pF1KB8 PCTSTSSTVPISHPAALTSHPHHAVHQGLEGDLLEHISPTLSVSGL----GAP----EHS
                                     : :: . .:...:.:.    : :    .:.
CCDS50 HHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLL-YSQPSFTVNGMLGAGGQPAGLHHHG
         160       170       180        190       200       210    

      140       150       160       170              180           
pF1KB8 VMPAQIHPHHLGAMGHLHQAMGMSHPHTVAPHS-------AMPACLSDVESD---PR--E
       .  :. .:::     : :     ::::   :         . :.   : .::   :   .
CCDS50 LRDAHDEPHHADHHPHPH-----SHPHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSDD
          220       230            240       250       260         

        190       200       210       220       230       240      
pF1KB8 LEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKP
       :: ::..::::::::: :::::: ::..:   : . .::.::::::.: :: .::  :::
CCDS50 LEQFAKQFKQRRIKLGFTQADVGLALGTLY--G-NVFSQTTICRFEALQLSFKNMCKLKP
     270       280       290         300        310       320      

        250       260       270       280       290       300      
pF1KB8 VLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAA
       .:. :::::...    .:  ..   .....::::: .  : .::..:   :.::...:..
CCDS50 LLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITS
        330       340       350       360       370       380      

        310       320       330                                 
pF1KB8 IAEKLDLKKNVVRVWFCNQRQKQKRMKYSAVH                         
       .:..:.:.:.::::::::.:::.:::                               
CCDS50 LADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ
        390       400       410       420       430       440   

>>CCDS33265.1 POU3F3 gene_id:5455|Hs108|chr2              (500 aa)
 initn: 542 init1: 362 opt: 512  Z-score: 443.1  bits: 90.9 E(32554): 2.3e-18
Smith-Waterman score: 540; 37.0% identity (61.0% similar) in 305 aa overlap (37-332:176-464)

         10        20        30        40          50        60    
pF1KB8 KQPFGMHPVLQEPKFSSLHSGSEAMRRVCLPAPQLQGNI--FGSFDESLLARAEALAAVD
                                     : :  ::.   .:.   .  : : : ::. 
CCDS33 GPDVKGGAGRDDLHAGTALHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAH
         150       160       170       180       190       200     

           70        80           90       100       110        120
pF1KB8 IVSHGKNHPFKPDATYHTMS---SVPCTSTSSTVPISHPAALTSHPHHAVHQGL-EGDLL
       . : . ..   :..  ...    .:    ..   : .  ..  .  .  :: :: .::  
CCDS33 LPSMAGGQQPPPQSLLYSQPGGFTVNGMLSAPPGPGGGGGGAGGGAQSLVHPGLVRGD--
         210       220       230       240       250       260     

              130       140       150       160         170        
pF1KB8 EHISPTLSVSGLGAPEHSVMPAQIHPHHLGAMGHLHQAMGMSHP--HTVAPHSAMPACLS
          .: :.       .: . :   ::::  .  :   . : . :  ..  :::   .  :
CCDS33 ---TPELAEHH-HHHHHHAHPHPPHPHHAQGPPHHGGGGGGAGPGLNSHDPHSDEDTPTS
              270        280       290       300       310         

      180       190       200       210       220        230       
pF1KB8 DVESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSL-SQSTICRFESLTLS
       :      .:: ::..::::::::: :::::: ::..:     :.. ::.::::::.: ::
CCDS33 D------DLEQFAKQFKQRRIKLGFTQADVGLALGTL----YGNVFSQTTICRFEALQLS
     320             330       340       350           360         

       240       250       260       270       280       290       
pF1KB8 HNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQP
        .::  :::.:. :::::...    .:  ..   .....::::: .  : .::..:   :
CCDS33 FKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCP
     370       380       390       400       410       420         

       300       310       320       330                           
pF1KB8 RPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSAVH                   
       .::...:. .:..:.:.:.::::::::.:::.:::                         
CCDS33 KPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQQTPDDVYSQVGTVSADTP
     430       440       450       460       470       480         

CCDS33 PPHHGLQTSVQ
     490       500

>>CCDS30679.1 POU3F1 gene_id:5453|Hs108|chr1              (451 aa)
 initn: 550 init1: 352 opt: 508  Z-score: 440.3  bits: 90.3 E(32554): 3.3e-18
Smith-Waterman score: 523; 44.0% identity (67.1% similar) in 234 aa overlap (108-336:188-401)

        80        90       100       110        120       130      
pF1KB8 ATYHTMSSVPCTSTSSTVPISHPAALTSHPHHAVHQ-GLEGDLLEHISPTLSVSGLGAPE
                                     :::.:. : :..:     : :     ::  
CCDS30 LYAQAAYPGGGGGGLAGMLAAGGGGAGPGLHHALHEDGHEAQLEPSPPPHL-----GAHG
       160       170       180       190       200            210  

        140       150          160       170       180       190   
pF1KB8 HSVMPAQIHPHHLG---AMGHLHQAMGMSHPHTVAPHSAMPACLSDVESDPRELEAFAER
       :    :. : :  :   : .::: . : .   .:. ::   :  ::      .:: ::..
CCDS30 H----AHGHAHAGGLHAAAAHLHPGAG-GGGSSVGEHSDEDAPSSD------DLEQFAKQ
                220       230        240       250             260 

           200       210       220        230       240       250  
pF1KB8 FKQRRIKLGVTQADVGAALANLKIPGVGSL-SQSTICRFESLTLSHNNMIALKPVLQAWL
       ::::::::: :::::: ::..:     :.. ::.::::::.: :: .::  :::.:. ::
CCDS30 FKQRRIKLGFTQADVGLALGTL----YGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWL
             270       280           290       300       310       

            260       270       280       290       300       310  
pF1KB8 EEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLD
       ::....    ..  ..   .....::::: .  : .::..:   :.::...:...:..:.
CCDS30 EETDSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQ
       320       330       340       350       360       370       

            320       330                                          
pF1KB8 LKKNVVRVWFCNQRQKQKRMKYSAVH                                  
       :.:.::::::::.:::.:::  .:                                    
CCDS30 LEKEVVRVWFCNRRQKEKRMTPAAGAGHPPMDDVYAPGELGPGGGGASPPSAPPPPPPAA
       380       390       400       410       420       430       

>>CCDS14450.1 POU3F4 gene_id:5456|Hs108|chrX              (361 aa)
 initn: 519 init1: 357 opt: 496  Z-score: 431.5  bits: 88.3 E(32554): 1e-17
Smith-Waterman score: 511; 39.2% identity (62.7% similar) in 268 aa overlap (66-332:101-336)

          40        50        60        70        80        90     
pF1KB8 LPAPQLQGNIFGSFDESLLARAEALAAVDIVSHGKNHPFKPDATYHTMSSVPCTSTSSTV
                                     :.: . :  .:.:     : .:  : .:. 
CCDS14 LATSPLDQQDVKPGREDLQLGAIIHHRSPHVAHHSPHTNHPNAW--GASPAPNPSITSS-
               80        90       100       110         120        

         100       110       120       130       140       150     
pF1KB8 PISHPAALTSHPHHAVHQGLEGDLLEHISPTLSVSGLGAPEHSVMPAQIHPHHLGAMGHL
         ..:  . :.:  .:     . .::: .  :.    .:  .:. :.  .:   : .:  
CCDS14 --GQPLNVYSQPGFTV-----SGMLEHGG--LTPPPAAASAQSLHPVLREPPDHGELGS-
         130       140              150       160       170        

         160       170       180       190       200       210     
pF1KB8 HQAMGMSHPHTVAPHSAMPACLSDVESDPRELEAFAERFKQRRIKLGVTQADVGAALANL
                :    ::   .  ::      ::: ::..::::::::: :::::: ::..:
CCDS14 ---------HHCQDHSDEETPTSD------ELEQFAKQFKQRRIKLGFTQADVGLALGTL
                180       190             200       210       220  

         220        230       240       250       260       270    
pF1KB8 KIPGVGSL-SQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSER
            :.. ::.::::::.: :: .::  :::.:. :::::...    .:  ..   ...
CCDS14 ----YGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRK
                230       240       250       260       270        

          280       290       300       310       320       330    
pF1KB8 KRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKY
       ..::::: .  :  ::..:   :.:....:...:..:.:.:.::::::::.:::.:::  
CCDS14 RKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRMTP
      280       290       300       310       320       330        

                              
pF1KB8 SAVH                   
                              
CCDS14 PGDQQPHEVYSHTVKTDTSCHDL
      340       350       360 

>>CCDS8431.1 POU2F3 gene_id:25833|Hs108|chr11             (436 aa)
 initn: 489 init1: 216 opt: 492  Z-score: 427.1  bits: 87.8 E(32554): 1.8e-17
Smith-Waterman score: 500; 39.8% identity (62.8% similar) in 266 aa overlap (83-332:80-339)

             60        70        80        90           100        
pF1KB8 LLARAEALAAVDIVSHGKNHPFKPDATYHTMSSVPCTSTSSTVPISH----PAALTSHPH
                                     ... :: . .:  :...    :. : :  .
CCDS84 LSDSLQQTLSHRPCHLSQGPAMMSGNQMSGLNASPCQDMASLHPLQQLVLVPGHLQSVSQ
      50        60        70        80        90       100         

      110             120       130       140       150       160  
pF1KB8 HAV------HQGLEGDLLEHISPTLSVSGLGAPEHSVMPAQIHPHHLGAMGHLHQAMGMS
         .      .:::. .::    :  . :::  :. .   :.    : :  :   .    .
CCDS84 FLLSQTQPGQQGLQPNLLPF--PQQQ-SGLLLPQTGPGLASQAFGHPGLPGSSLEPHLEA
     110       120         130        140       150       160      

            170       180       190       200       210       220  
pF1KB8 HPHTVAPHSAMPACLSDVESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGS
         :  .:.    .  .:  :: .::: ::. ::::::::: ::.::: :..  :. : ..
CCDS84 SQHLPVPKHLPSSGGADEPSDLEELEKFAKTFKQRRIKLGFTQGDVGLAMG--KLYG-ND
        170       180       190       200       210         220    

            230       240       250       260            270       
pF1KB8 LSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKN-----SKPELFNGSERKRK
       .::.:: :::.:.:: .::  :::.:. ::..::..  . .     : : : .   ::::
CCDS84 FSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAESSPSDPSVSTPSSYPSLSEVFGRKRK
           230       240       250       260       270       280   

        280       290       300       310       320       330      
pF1KB8 -RTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSA
        :::: .  . .::  :  .:.::::.:. :::.:...:.::::::::.:::.::.    
CCDS84 KRTSIETNIRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKRINCPV
           290       300       310       320       330       340   

                                                                   
pF1KB8 VH                                                          
                                                                   
CCDS84 ATPIKPPVYNSRLVSPSGSLGPLSVPPVHSTMPGTVTSSCSPGNNSRPSSPGSGLHASSP
           350       360       370       380       390       400   

>>CCDS58190.1 POU2F3 gene_id:25833|Hs108|chr11            (438 aa)
 initn: 489 init1: 216 opt: 492  Z-score: 427.1  bits: 87.8 E(32554): 1.8e-17
Smith-Waterman score: 500; 39.8% identity (62.8% similar) in 266 aa overlap (83-332:82-341)

             60        70        80        90           100        
pF1KB8 LLARAEALAAVDIVSHGKNHPFKPDATYHTMSSVPCTSTSSTVPISH----PAALTSHPH
                                     ... :: . .:  :...    :. : :  .
CCDS58 LSDSLQQTLSHRPCHLSQGPAMMSGNQMSGLNASPCQDMASLHPLQQLVLVPGHLQSVSQ
              60        70        80        90       100       110 

      110             120       130       140       150       160  
pF1KB8 HAV------HQGLEGDLLEHISPTLSVSGLGAPEHSVMPAQIHPHHLGAMGHLHQAMGMS
         .      .:::. .::    :  . :::  :. .   :.    : :  :   .    .
CCDS58 FLLSQTQPGQQGLQPNLLPF--PQQQ-SGLLLPQTGPGLASQAFGHPGLPGSSLEPHLEA
             120       130          140       150       160        

            170       180       190       200       210       220  
pF1KB8 HPHTVAPHSAMPACLSDVESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGS
         :  .:.    .  .:  :: .::: ::. ::::::::: ::.::: :..  :. : ..
CCDS58 SQHLPVPKHLPSSGGADEPSDLEELEKFAKTFKQRRIKLGFTQGDVGLAMG--KLYG-ND
      170       180       190       200       210         220      

            230       240       250       260            270       
pF1KB8 LSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKN-----SKPELFNGSERKRK
       .::.:: :::.:.:: .::  :::.:. ::..::..  . .     : : : .   ::::
CCDS58 FSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAESSPSDPSVSTPSSYPSLSEVFGRKRK
         230       240       250       260       270       280     

        280       290       300       310       320       330      
pF1KB8 -RTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSA
        :::: .  . .::  :  .:.::::.:. :::.:...:.::::::::.:::.::.    
CCDS58 KRTSIETNIRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKRINCPV
         290       300       310       320       330       340     

                                                                   
pF1KB8 VH                                                          
                                                                   
CCDS58 ATPIKPPVYNSRLVSPSGSLGPLSVPPVHSTMPGTVTSSCSPGNNSRPSSPGSGLHASSP
         350       360       370       380       390       400     

>>CCDS2919.1 POU1F1 gene_id:5449|Hs108|chr3               (291 aa)
 initn: 493 init1: 223 opt: 479  Z-score: 418.4  bits: 85.6 E(32554): 5.5e-17
Smith-Waterman score: 480; 40.0% identity (61.9% similar) in 270 aa overlap (86-335:13-275)

          60        70        80        90         100         110 
pF1KB8 RAEALAAVDIVSHGKNHPFKPDATYHTMSSVPCTS-TSSTVP-ISHPAALTSHP--HHAV
                                     .: .: .:.:.: : : .:    :  .::.
CCDS29                   MSCQAFTSADTFIPLNSDASATLPLIMHHSAAECLPVSNHAT
                                 10        20        30        40  

             120           130       140        150         160    
pF1KB8 HQGLEGDLLEHISPTLSV----SGLGAPEHSVMPAQIH-PHHLGAMGH--LHQAMGMSHP
       .    .  :..  :.       :  :.   :. :   . : :  . :   .:: .    :
CCDS29 NVMSTATGLHYSVPSCHYGNQPSTYGVMAGSLTPCLYKFPDHTLSHGFPPIHQPLLAEDP
             50        60        70        80        90       100  

                170       180        190       200       210       
pF1KB8 ------HTVAPHSAMPACLSDVES-DPRELEAFAERFKQRRIKLGVTQADVGAALANLKI
             . .  .: .     :..: . :::: ::..:: :::::: ::..:: ::: .. 
CCDS29 TAADFKQELRRKSKLVEEPIDMDSPEIRELEKFANEFKVRRIKLGYTQTNVGEALAAVH-
            110       120       130       140       150       160  

       220        230       240       250       260       270      
pF1KB8 PGVGS-LSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKR
          :: .::.::::::.: :: .:   :: .:. :::::: .    : :    ...::::
CCDS29 ---GSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVGALYNEK---VGANERKR
                170       180       190       200          210     

         280       290       300       310       320       330     
pF1KB8 KR-TSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYS
       :: :.:.   : .:: .:. : .:::..:  .::.:.:.:.::::::::.::..::.: :
CCDS29 KRRTTISIAAKDALERHFGEQNKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVKTS
         220       230       240       250       260       270     

                       
pF1KB8 AVH             
                       
CCDS29 LNQSLFSISKEHLECR
         280       290 




338 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:41:26 2016 done: Fri Nov  4 16:41:26 2016
 Total Scan time:  2.190 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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