Result of FASTA (omim) for pF1KB8958
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8958, 335 aa
  1>>>pF1KB8958 335 - 335 aa - 335 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5476+/-0.000322; mu= 12.5662+/- 0.020
 mean_var=165.7736+/-33.816, 0's: 0 Z-trim(120.9): 273  B-trim: 28 in 1/58
 Lambda= 0.099613
 statistics sampled from 36346 (36666) to 36346 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.43), width:  16
 Scan time:  8.850

The best scores are:                                      opt bits E(85289)
NP_005513 (OMIM: 142955,601536) homeobox protein H ( 335) 2317 344.5 1.9e-94
NP_705873 (OMIM: 142955,601536) homeobox protein H ( 137)  846 132.7 4.5e-31
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301)  625 101.3 2.7e-21
NP_078777 (OMIM: 142987) homeobox protein Hox-D1 [ ( 328)  525 87.0 6.1e-17
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  338 60.0 6.5e-09
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  338 60.0 6.5e-09
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270)  331 59.0 1.3e-08
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255)  323 57.8 2.8e-08
XP_005257332 (OMIM: 142967) PREDICTED: homeobox pr ( 247)  321 57.5 3.4e-08
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356)  317 57.1 6.4e-08
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320)  313 56.5 8.9e-08
XP_011533177 (OMIM: 600297) PREDICTED: homeobox pr ( 321)  309 55.9 1.3e-07
NP_001256 (OMIM: 600297) homeobox protein CDX-2 [H ( 313)  304 55.2 2.2e-07
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269)  295 53.8 4.8e-07
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222)  289 52.9 7.7e-07
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251)  289 52.9 8.3e-07
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233)  287 52.6 9.7e-07
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430)  290 53.4 1.1e-06
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224)  285 52.3 1.1e-06
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224)  285 52.3 1.1e-06
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224)  285 52.3 1.1e-06
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283)  285 52.4 1.3e-06
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288)  285 52.4 1.4e-06
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  287 52.9 1.5e-06
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  287 52.9 1.5e-06
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  287 52.9 1.5e-06
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  287 52.9 1.5e-06
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  287 52.9 1.5e-06
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  287 52.9 1.5e-06
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  287 52.9 1.5e-06
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401)  286 52.7 1.5e-06
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  285 52.6 1.8e-06
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  285 52.6 1.8e-06
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  285 52.6 1.8e-06
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432)  285 52.6 1.8e-06
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  285 52.6 1.8e-06
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  285 52.6 1.8e-06
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  285 52.6 1.8e-06
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  285 52.6 1.8e-06
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235)  280 51.6   2e-06
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217)  278 51.3 2.3e-06
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299)  279 51.6 2.5e-06
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153)  274 50.5 2.7e-06
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358)  279 51.7 2.8e-06
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358)  279 51.7 2.8e-06
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376)  279 51.7 2.9e-06
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431)  279 51.8 3.2e-06
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  279 51.8 3.2e-06
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  279 51.8 3.2e-06
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  279 51.8 3.2e-06


>>NP_005513 (OMIM: 142955,601536) homeobox protein Hox-A  (335 aa)
 initn: 2317 init1: 2317 opt: 2317  Z-score: 1816.8  bits: 344.5 E(85289): 1.9e-94
Smith-Waterman score: 2317; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)

               10        20        30        40        50        60
pF1KB8 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 IGSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IGSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADVS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 GGYPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GGYPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYLGQPNAVRTNFTTKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYLGQPNAVRTNFTTKQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATP
              250       260       270       280       290       300

              310       320       330     
pF1KB8 PGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH
       :::::::::::::::::::::::::::::::::::
NP_005 PGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH
              310       320       330     

>>NP_705873 (OMIM: 142955,601536) homeobox protein Hox-A  (137 aa)
 initn: 846 init1: 846 opt: 846  Z-score: 678.9  bits: 132.7 E(85289): 4.5e-31
Smith-Waterman score: 846; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KB8 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 IGSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
NP_705 IGSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 GGYPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSL
                                                                   
NP_705 RSLSLPRIGDIFSSADF                                           
              130                                                  

>>NP_002135 (OMIM: 142968,614744) homeobox protein Hox-B  (301 aa)
 initn: 614 init1: 377 opt: 625  Z-score: 503.2  bits: 101.3 E(85289): 2.7e-21
Smith-Waterman score: 731; 45.9% identity (67.1% similar) in 340 aa overlap (1-328:1-301)

               10        20        30         40        50         
pF1KB8 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQ-SCAVSANSCGGDDRFLVGRGV
       ::  :::::::::. . : :.  ::.. :     :.:  : : ...: ... :.  : : 
NP_002 MDYNRMNSFLEYPLCNRGPSAY-SAHSAP-----TSFPPSSAQAVDSYASEGRY--GGG-
               10        20              30        40          50  

      60        70             80        90       100       110    
pF1KB8 QIGSPHHHHHHHHHHPQPAT-----YQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALN
        ..::  ...  .   :: .     . .:.  :  :. ..:.::::      : . : :.
NP_002 -LSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSG--YAPAACSPSYG------PSQYYPLG
               60        70        80          90             100  

           120       130       140       150       160         170 
pF1KB8 Q-EADVSGGYPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYI--HHSYGQEHQSL
       : :.:  ::: .  :. :...:..         .::..:..:   :   :  ::.:. . 
NP_002 QSEGD--GGYFH--PSSYGAQLGG-------LSDGYGAGGAGPGPYPPQHPPYGNEQTAS
              110         120              130       140       150 

             180       190       200        210       220       230
pF1KB8 ALATYNNSLSPLHASHQEACRSPASETSSP-AQTFDWMKVKRNPPKTGKVGEYGYLGQPN
          .: . ::    ...  :  : :: ..: :.::::::::::::::.::.: : ::.:.
NP_002 FAPAYADLLS---EDKETPC--P-SEPNTPTARTFDWMKVKRNPPKTAKVSEPG-LGSPS
             160             170       180       190        200    

              240       250       260       270       280       290
pF1KB8 AVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKE
       ..::::::.:::::::::::::::.:::::::::.:.:::::::::::::::::::::.:
NP_002 GLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE
          210       220       230       240       250       260    

               300        310       320       330     
pF1KB8 -GLLPISPATPPGND-EKAEESSEKSSSSPCVPSPGSSTSDTLTTSH
        : .:  :: :::   : : ..:..:. .    ::.: ::       
NP_002 EGRVP--PA-PPGCPKEAAGDASDQSTCTSPEASPSSVTS       
            270        280       290       300        

>>NP_078777 (OMIM: 142987) homeobox protein Hox-D1 [Homo  (328 aa)
 initn: 535 init1: 499 opt: 525  Z-score: 425.1  bits: 87.0 E(85289): 6.1e-17
Smith-Waterman score: 535; 37.0% identity (58.7% similar) in 341 aa overlap (6-328:1-328)

               10             20        30        40        50     
pF1KB8 MDNARMNSFLEYPILSS-----GDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLV
            :.:.:::   ::     ::  . . .   :: : ...:     .:   ::  :. 
NP_078      MSSYLEYVSCSSSGGVGGDVLSLAPKFCRSDARPVALQPAFPLGN---GDGAFVS
                    10        20        30        40           50  

          60        70           80               90       100     
pF1KB8 GRGVQIGSPHHHHHHHHHHPQ---PATYQTS-----GNL--GVSYSHSSCGPSYGSQNFS
          .  . :         .:.   ::. : .     :    :.. . .. : .::  . .
NP_078 CLPLAAARPSPSPPAAPARPSVPPPAAPQYAQCTLEGAYEPGAAPAAAAGGADYGFLGSG
             60        70        80        90       100       110  

          110       120        130       140       150        160  
pF1KB8 APYS-PYALNQEADVSGGYPQCAP-AVYSGNLSSPMVQHHHHHQGYAGGAVGS-PQYIHH
         :. : .:.. :: .:.. . :  ::.::. .: ... .  . ..  :  :  :  .. 
NP_078 PAYDFPGVLGRAADDGGSHVHYATSAVFSGG-GSFLLSGQVDYAAF--GEPGPFPACLKA
            120       130       140        150         160         

            170       180       190       200       210       220  
pF1KB8 SYGQEHQSLALATYNNSLSPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGE
       :   .  ..  :      ::  ... ..  ::::   .  .::.:::::::  : ::..:
NP_078 SADGHPGAFQTA------SPAPGTYPKSV-SPASGLPAAFSTFEWMKVKRNASKKGKLAE
     170       180             190        200       210       220  

            230       240       250       260       270       280  
pF1KB8 YGYLGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRM
       ::  .  .:.::::.::::::::::::::::::::::.:::  :.::.::::::::::::
NP_078 YGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRM
            230       240       250       260       270       280  

            290       300       310       320       330     
pF1KB8 KQKKREKEGLLPISPATPPGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH
       ::::::.::::  .  . : .   .  .  :  ..:  :: ..  :       
NP_078 KQKKREREGLLATAIPVAPLQLPLSGTTPTKFIKNPGSPSQSQEPS       
            290       300       310       320               

>>NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [Homo  (264 aa)
 initn: 397 init1: 260 opt: 338  Z-score: 281.0  bits: 60.0 E(85289): 6.5e-09
Smith-Waterman score: 338; 36.3% identity (53.5% similar) in 215 aa overlap (101-302:24-229)

               80        90       100        110         120       
pF1KB8 HHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAP-YSP--YALNQEADVSGGYPQCA
                                     :::   : .::  :. ..:.  .  . .  
NP_055        MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELY
                      10        20        30        40        50   

       130       140       150        160       170           180  
pF1KB8 PAVYSGNLSSPMVQHHHHHQGYAGGAVG-SPQYIHHSYGQEHQSLA----LATYNNSLSP
       :       : :  :.        :.. : .:    : . .. :::     :.  . : ::
NP_055 PPP-PPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSP
             60        70        80        90       100       110  

             190       200       210           220       230       
pF1KB8 LH-ASHQEACRSPASETSSPAQTFDWMKVKR----NPPKTGKVGEYGYLGQPNAVRTNFT
          :  : :   :.: .:.   .. :::  .    ::  .:        :.:.  :: .:
NP_055 APPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNG--------GEPKRSRTAYT
            120       130       140       150               160    

       240       250       260       270       280       290       
pF1KB8 TKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISP
        .:. :::::::.:.:::: ::.::: :: :.: :.:::::::::: :: ..     .  
NP_055 RQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRS
          170       180       190       200       210       220    

       300       310       320       330       
pF1KB8 ATPPGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH  
       : : :                                   
NP_055 APPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
          230       240       250       260    

>>NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [Homo  (264 aa)
 initn: 397 init1: 260 opt: 338  Z-score: 281.0  bits: 60.0 E(85289): 6.5e-09
Smith-Waterman score: 338; 36.3% identity (53.5% similar) in 215 aa overlap (101-302:24-229)

               80        90       100        110         120       
pF1KB8 HHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAP-YSP--YALNQEADVSGGYPQCA
                                     :::   : .::  :. ..:.  .  . .  
NP_705        MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELY
                      10        20        30        40        50   

       130       140       150        160       170           180  
pF1KB8 PAVYSGNLSSPMVQHHHHHQGYAGGAVG-SPQYIHHSYGQEHQSLA----LATYNNSLSP
       :       : :  :.        :.. : .:    : . .. :::     :.  . : ::
NP_705 PPP-PPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSP
             60        70        80        90       100       110  

             190       200       210           220       230       
pF1KB8 LH-ASHQEACRSPASETSSPAQTFDWMKVKR----NPPKTGKVGEYGYLGQPNAVRTNFT
          :  : :   :.: .:.   .. :::  .    ::  .:        :.:.  :: .:
NP_705 APPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNG--------GEPKRSRTAYT
            120       130       140       150               160    

       240       250       260       270       280       290       
pF1KB8 TKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISP
        .:. :::::::.:.:::: ::.::: :: :.: :.:::::::::: :: ..     .  
NP_705 RQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRS
          170       180       190       200       210       220    

       300       310       320       330       
pF1KB8 ATPPGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH  
       : : :                                   
NP_705 APPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
          230       240       250       260    

>>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo  (270 aa)
 initn: 323 init1: 257 opt: 331  Z-score: 275.4  bits: 59.0 E(85289): 1.3e-08
Smith-Waterman score: 331; 30.8% identity (52.9% similar) in 263 aa overlap (47-298:10-264)

         20        30        40            50        60        70  
pF1KB8 SGDSGTCSARAYPSDHRITTFQSCAVSANSCG----GDDRFLVGRGVQIGSPHHHHHHHH
                                     ::    : :  : . : . .  .. .    
NP_061                      MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSAS
                                    10        20        30         

             80         90             100       110       120     
pF1KB8 HHPQPATYQTSG-NLGVSYS---HSSCGP---SYGSQNFSAPYSPYALNQEADVSGGYPQ
        :     :  .: .:.:. :   : . :    ::...  .::  :   .: : .:   ::
NP_061 MHSGRYGYGYNGMDLSVGRSGSGHFGSGERARSYAASASAAPAEPR-YSQPA-TSTHSPQ
      40        50        60        70        80         90        

         130       140       150       160       170       180     
pF1KB8 CAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSLSPLHA
         :   :.   ::  . ::  ..  ... :.      .. . ..... :.  .  .:  .
NP_061 PDPLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASS
       100       110       120       130       140       150       

         190       200       210       220       230       240     
pF1KB8 SHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYLGQPNAVRTNFTTKQLTELE
        .  :   :.    .  : . ::.  .   .  ..:  :  :.   .:: .:  :  :::
NP_061 EQASAQSEPSPAPPAQPQIYPWMR--KLHISHDNIG--GPEGK--RARTAYTRYQTLELE
       160       170       180         190           200       210 

         250       260       270       280       290       300     
pF1KB8 KEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATPPGNDE
       ::::::.:::: ::.::: .: :.: :.:::::::::: :: .:   . .. :       
NP_061 KEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP 
             220       230       240       250       260       270 

         310       320       330     
pF1KB8 KAEESSEKSSSSPCVPSPGSSTSDTLTTSH

>>NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [Homo  (255 aa)
 initn: 315 init1: 264 opt: 323  Z-score: 269.5  bits: 57.8 E(85289): 2.8e-08
Smith-Waterman score: 332; 34.8% identity (54.2% similar) in 227 aa overlap (99-322:37-238)

       70        80        90       100       110       120        
pF1KB8 HHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADVSGGYPQCAP
                                     ::.   .: ..: .:  . :  :  :    
NP_055 MVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPRPDF-GEQP----
         10        20        30        40        50         60     

      130       140       150       160       170       180        
pF1KB8 AVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSLSPLHASHQ
         ..:.  .:      . .:   :. :.    :..   :      :     :   .:  :
NP_055 --FGGSGPGPGSALPARGHGQEPGGPGG----HYAAPGEPCPAPPAPPPAPLPGARAYSQ
                70        80            90       100       110     

      190         200        210       220       230       240     
pF1KB8 EACRSPASETS--SPAQTFDWMK-VKRNPPKTGKVGEYGYLGQPNAVRTNFTTKQLTELE
          ..: : :.  .:: .. ::: :. :  . . .:     :.:.  :: .: .:. :::
NP_055 SDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTG-----GEPKRSRTAYTRQQVLELE
         120       130       140       150            160       170

         250       260       270       280       290       300     
pF1KB8 KEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATPPGNDE
       ::::::.:::: ::.::: .: :.: :.:::::::::: :: .:          :  . .
NP_055 KEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHK---------LPNTKGR
              180       190       200       210                220 

         310       320       330         
pF1KB8 KAEESSEKSSSSPCVPSPGSSTSDTLTTSH    
       ..  :: .: ::  .::                 
NP_055 SSSSSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL
             230       240       250     

>>XP_005257332 (OMIM: 142967) PREDICTED: homeobox protei  (247 aa)
 initn: 304 init1: 304 opt: 321  Z-score: 268.1  bits: 57.5 E(85289): 3.4e-08
Smith-Waterman score: 321; 47.9% identity (68.4% similar) in 117 aa overlap (208-322:12-127)

       180       190       200       210       220         230     
pF1KB8 NSLSPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVG--EYGYLGQPNAVRTN
                                     .. .:  ::.. .:  : :  :    .:: 
XP_005                    MLCPDPGRGCRLERERRKPKSNGLGLPEAGG-GGARRLRTA
                                  10        20        30         40

         240       250       260       270       280       290     
pF1KB8 FTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPI
       .:. :: :::::::::::: : ::::::: :.:.: :::.::::::::.:.. ..   : 
XP_005 YTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPD
               50        60        70        80        90       100

         300       310       320       330                         
pF1KB8 SPATPPGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH                    
       .  . ::  :   . .:. ..::  ::                                 
XP_005 GEPACPGALEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGALSADPRPLAVRLEG
              110       120       130       140       150       160

>>NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [Homo  (356 aa)
 initn: 350 init1: 304 opt: 317  Z-score: 263.2  bits: 57.1 E(85289): 6.4e-08
Smith-Waterman score: 327; 42.5% identity (58.8% similar) in 153 aa overlap (194-322:84-236)

           170       180       190       200       210             
pF1KB8 YGQEHQSLALATYNNSLSPLHASHQEACRSPASETSSPAQTFDWMKVKRN---P------
                                     :   .. ::  : ::: :..   :      
NP_002 PSLQPGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATS
            60        70        80        90       100       110   

            220             230              240       250         
pF1KB8 --PKTGKVGEYGY------LGQPNA-------VRTNFTTKQLTELEKEFHFNKYLTRARR
         : .. :   :       :: :.:       .:: .:. :: :::::::::::: : ::
NP_002 PSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRR
           120       130       140       150       160       170   

     260       270       280       290       300       310         
pF1KB8 VEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATPPGNDEKAEESSEKSSSSPC
       ::::: :.:.: :::.::::::::.:.. ..   : .  . ::  :   . .:. ..:: 
NP_002 VEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASPG
           180       190       200       210       220       230   

     320       330                                                 
pF1KB8 VPSPGSSTSDTLTTSH                                            
        ::                                                         
NP_002 GPSASRAAWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCALRGAGGLEPGPLPED
           240       250       260       270       280       290   




335 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:40:54 2016 done: Fri Nov  4 16:40:56 2016
 Total Scan time:  8.850 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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