GENSCAN 1.0	Date run:  4-Nov-116	Time: 16:34:53

Sequence gi568815581r:48626793_48828593 : 201801 bp : 46.89% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   4378   4449   72  2  0  131   72     4 0.782   2.48
 1.02 Intr +   6634   6761  128  2  2  109   86   118 0.795  14.10
 1.03 Term +   6987   7277  291  2  0   41   54   165 0.963   3.74
 1.04 PlyA +   8480   8485    6                               1.05

 2.10 PlyA -   9741   9736    6                              -0.45
 2.09 Term -   9981   9839  143  1  2   87   44   121 0.999   5.69
 2.08 Intr -  10201  10076  126  2  0   61   94   102 0.058   8.75
 2.07 Intr -  14427  14325  103  0  1   79   61    48 0.006   0.95
 2.06 Intr -  16275  16230   46  2  1  129   51    21 0.010   0.91
 2.05 Intr -  19693  19560  134  1  2   40   89    59 0.064   0.64
 2.04 Intr -  20027  19813  215  0  2   45   92   118 0.059   6.33
 2.03 Intr -  45191  45006  186  0  0   25  103   190 0.806  13.86
 2.02 Intr -  52634  52606   29  1  2   47   94    30 0.278  -2.74
 2.01 Init -  56533  56439   95  1  2  105   94    40 0.496   6.16
 2.00 Prom -  57535  57496   40                              -3.46

 3.03 PlyA -  57748  57743    6                               1.05
 3.02 Term -  64584  64324  261  0  0   62   44   190 0.829   7.53
 3.01 Init -  70712  70491  222  2  0   44   92   123 0.937   6.86
 3.00 Prom -  90510  90471   40                              -4.46

 4.05 PlyA -  90657  90652    6                               1.05
 4.04 Term -  97145  97054   92  0  2  100   35    87 0.786   2.48
 4.03 Intr -  97879  97666  214  1  1   18   24   246 0.624   9.49
 4.02 Intr - 100251 100022  230  1  2   91   67   455 0.844  41.29
 4.01 Init - 101801 101201  601  2  1   83   82   470 0.732  41.35
 4.00 Prom - 103567 103528   40                              -8.86

 5.00 Prom + 105851 105890   40                             -10.15
 5.01 Init + 106651 106664   14  0  2  110   67    32 0.905   3.18
 5.02 Intr + 107264 107388  125  2  2  121   68    31 0.567   4.63
 5.03 Intr + 111749 111875  127  0  1   83   81    37 0.243   2.24
 5.04 Intr + 118787 118952  166  2  1    5   57   160 0.247   4.56
 5.05 Intr + 121090 121260  171  0  0   66    8   189 0.830   8.84
 5.06 Term + 124554 124676  123  2  0  120   39    59 0.821   2.58
 5.07 PlyA + 126797 126802    6                               1.05

 6.20 PlyA - 130359 130354    6                               1.05
 6.19 Term - 133846 133745  102  1  0  117   38    32 0.626  -0.62
 6.18 Intr - 134841 134755   87  0  0  106  100    31 0.580   6.27
 6.17 Intr - 135856 135738  119  2  2   46   55    67 0.370  -0.62
 6.16 Intr - 142462 142211  252  2  0   90   39    75 0.307   0.21
 6.15 Intr - 143305 142936  370  1  1   96   94   145 0.777  10.58
 6.14 Intr - 158409 158131  279  0  0   98  103   193 0.988  19.47
 6.13 Intr - 159543 159372  172  2  1   86   97   129 0.968  13.55
 6.12 Intr - 161207 161019  189  1  0   91   74   203 0.996  17.90
 6.11 Intr - 163314 163139  176  0  2   99   73   207 0.909  19.04
 6.10 Intr - 164811 164586  226  2  1  105   75   317 0.890  30.09
 6.09 Intr - 169354 169269   86  1  2  121   94     7 0.957   3.22
 6.08 Intr - 170412 170269  144  0  0  125   93   109 0.998  15.58
 6.07 Intr - 172968 172812  157  2  1   55   75    69 0.979   2.31
 6.06 Intr - 174593 174463  131  2  2   93   61    70 0.952   4.29
 6.05 Intr - 174870 174733  138  0  0   66   68    50 0.636   1.46
 6.04 Intr - 177139 177110   30  1  0  130   76    20 0.834   3.33
 6.03 Intr - 178199 177943  257  0  2  103   18   165 0.668   8.16
 6.02 Intr - 185475 185370  106  0  1  112   99    72 0.641  10.49
 6.01 Init - 190576 190490   87  1  0   55   62    97 0.333   2.45

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  10166  10076   91  2  1   58   94   139 0.899  12.17
S.002 Init +  19901  20036  136  1  1   47  117   182 0.889  15.38


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581r:48626793_48828593|GENSCAN_predicted_peptide_1|163_aa
XLFLGGGGQGTPGMEDSQALSDWADTRLLTGAHAHTRTHRKNAAVQAEGGGGLTWAAAVP
AVRGRRKKDVRGRIKRKGKQIYERQKHPPRPLSLPAHFVRVERSSPSPRDLASAEPAARR
ALLSEESALTQPAPGRDWKPPPTRKIHRAPRRPYDRLGPPGLG

>gi568815581r:48626793_48828593|GENSCAN_predicted_CDS_1|492_bp
ncacttttcctgggagggggtggccaagggacaccagggatggaagacagtcaggctctg
agtgactgggcagacacccgcctgctcacaggtgctcacgctcacacccgcacccatcgc
aaaaacgcagctgtgcaggccgagggcggcggcggacttacctgggcggcggcggtgccg
gcagtgcgcggccgtcggaagaaagacgtccgggggcggattaaaaggaaggggaaacaa
atttacgagcggcagaagcacccgcctcggcccctttctttgcccgcacactttgtccgc
gtggagagaagcagccccagcccccgggacttggcctccgccgaaccggccgccaggcgc
gctcttctctcggaggagtcggcgctgacccagcccgcgcccggcagagactggaagccg
ccgcctacacggaaaatccacagagccccgcgcagaccctatgatcggctcggcccgccg
ggcttgggatga

>gi568815581r:48626793_48828593|GENSCAN_predicted_peptide_2|358_aa
MEKRVYLRASGKTSLKRWQLGWTVKVQERLVRNYVSNRLKTVSSYFRKKPLVSEPRQQPV
LPSKLPDPKREFQNRQSKRFLAEVPGLETLGFLSEEHPLVSVHGERRSVSPFAPPAPSAS
LPQTQTLPREASQRRGQKAATQSRHIPRLGRRHSPQTPWTPAVYEDARGTAWFREAWASR
GHRLNLDLQTEAASRVGPRGAPENALASLSAGTRPYLSNRSVHSLVQGPELLGFEANMEE
VVIGCCGLTGLSLRVPSTCDLVPGVPRSPVSSFASWGRGLKMLALPSSRLLGTSKEIRAV
EGSLASEMELGEGAKGDVPAASSRPSPERLQEHAPSPGAGRRAARESCSARTQRQGAA

>gi568815581r:48626793_48828593|GENSCAN_predicted_CDS_2|1077_bp
atggaaaaacgggtctacctgagggcttcagggaaaacttccttgaagagatggcagctc
ggctggactgtgaaggttcaagagaggctggtcaggaattatgtgagcaacagactcaag
acagtctcctcctacttccgtaaaaagcctttagtttcagaaccaaggcagcagccagtt
ctccccagtaaattaccagacccaaagagagagtttcagaaccggcagtcgaagcgcttc
ctggcagaggtcccgggcctggaaacactcggctttctgagcgaggagcaccctctagtg
tctgtccacggggaacgcaggagcgtgagccccttcgcgcccccagcgccgtcggcgtcg
ctgccccagacacagacactgcctcgagaggcctcacagaggcgggggcagaaggcggcg
acccagagccgccacatcccccgccttgggcgccgtcacagtccccagacgccctggact
cctgcagtctacgaagacgcgcgggggacggcgtggttccgagaggcgtgggcttcccgg
ggccaccggcttaaccttgatctccagaccgaggcagcttcccgggtagggcctcggggc
gcacccgaaaacgccttggcctccctgtccgctggcacccgaccctacctctccaacagg
tctgttcactccttggtccagggaccggagctcctgggcttcgaggcaaatatggaggag
gtagtgattgggtgttgtggcctgactggtctcagtctaagagtccccagcacctgtgac
ctggttcctggtgttccaagaagtccagtgtcttcttttgcaagctgggggaggggttta
aagatgctggcgctgccctctagccggctgctggggacatcaaaggagattcgggctgtg
gaaggctccctagcgtcggagatggagttaggagagggcgccaaaggcgacgtgccggcc
gccagctccaggccgagccccgagcgcctgcaggaacacgccccttcacccggcgcggga
cgcagagctgcgagagaatcttgttcagcgcggactcaacgccagggcgccgcctag

>gi568815581r:48626793_48828593|GENSCAN_predicted_peptide_3|160_aa
MKPKLIELKGEIEKSATGAEDFNPPFLTIDTTARQKINKDIEEFNKIINQQDLMNIYRTL
HPTTAKCSFFSTTQENGSVVEIQNLLGEKYIHGVQMRPGVACSVSQAQKDEFILEGNDIE
LVSNSAALIQQATTVKNKDIRKFLNGIYVSEKGTVQQADE

>gi568815581r:48626793_48828593|GENSCAN_predicted_CDS_3|483_bp
atgaagccaaaactgatagaactgaaaggagagatagaaaaatcggcaactggggctgaa
gacttcaatcctcctttcttaacaattgatacgacagctagacagaaaatcaacaaggat
atagaagagttcaacaaaatcatcaaccaacaagatctaatgaatatttatagaacactt
cacccaacaacagcaaaatgttcattcttttcgactactcaggagaatgggtctgttgtt
gaaatccaaaatttattgggtgaaaaatacatccacggggttcagatgagaccaggtgtt
gcttgttcagtatctcaagcccagaaagatgaattcatccttgaaggaaatgacattgag
cttgtttcaaattcagcggctttgattcagcaagccacaacagttaaaaacaaggatatc
aggaaatttttgaacggtatctacgtctctgaaaagggaactgttcagcaggctgatgaa
taa

>gi568815581r:48626793_48828593|GENSCAN_predicted_peptide_4|378_aa
MEPGNYATLDGAKDIEGLLGAGGGRNLVAHSPLTSHPAAPTLMPAVNYAPLDLPGSAEPP
KQCHPCPGVPQGTSPAPVPYGYFGGGYYSCRVSRSSLKPCAQAATLAAYPAETPTAGEEY
PSRPTEFAFYPGYPGTYQPMASYLDVSVVQTLGAPGEPRHDSLLPVDSYQSWALAGGWNS
QMCCQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKF
ITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAKENLRAGFHRPRSYRLPAAWGLVG
TELRVGVQDPMSPAIRPGHRQMYWSSPRETQEEGKEVRYEPSRMEEEGEPNSRSESLSKL
RNGITGSRLRGLQARNNF

>gi568815581r:48626793_48828593|GENSCAN_predicted_CDS_4|1137_bp
atggagcccggcaattatgccaccttggatggagccaaggatatcgaaggcttgctggga
gcgggaggggggcggaatctggtcgcccactcccctctgaccagccacccagcggcgcct
acgctgatgcctgctgtcaactatgcccccttggatctgccaggctcggcggagccgcca
aagcaatgccacccatgccctggggtgccccaggggacgtccccagctcccgtgccttat
ggttactttggaggcgggtactactcctgccgagtgtcccggagctcgctgaaaccctgt
gcccaggcagccaccctggccgcgtaccccgcggagactcccacggccggggaagagtac
cccagccgccccactgagtttgccttctatccgggatatccgggaacctaccagcctatg
gccagttacctggacgtgtctgtggtgcagactctgggtgctcctggagaaccgcgacat
gactccctgttgcctgtggacagttaccagtcttgggctctcgctggtggctggaacagc
cagatgtgttgccagggagaacagaacccaccaggtcccttttggaaggcagcatttgca
gactccagcgggcagcaccctcctgacgcctgcgcctttcgtcgcggccgcaagaaacgc
attccgtacagcaaggggcagttgcgggagctggagcgggagtatgcggctaacaagttc
atcaccaaggacaagaggcgcaagatctcggcagccaccagcctctcggagcgccagatt
accatctggtttcagaaccgccgggtcaaagagaagaaggttctcgccaaggagaacctg
cgggcaggctttcatcgtccgcggagctacaggcttccagcggcctggggcctcgtgggt
actgagctgcgtgtgggggtccaggacccgatgtcgcctgccattcggccagggcatcgg
cagatgtattggtccagcccccgagagacccaggaagaaggcaaggaggttcggtacgag
ccatctcgaatggaagaagaaggcgagccaaactcccgcagcgaatctctcagcaagcta
cgaaatgggatcacagggtcgcgtctacgcgggctccaggcccgaaataatttctaa

>gi568815581r:48626793_48828593|GENSCAN_predicted_peptide_5|241_aa
MAAVSALAQFFHCSSLKSGKGLRGYSSQRPEPALGRGRPGGRPSVAASGITCPGSAGQAL
DEGKHRLTPTSPSSPALHCPRSVQVKRASAIRNSAMRNSAHKHPPAKRHSDGATAAASLH
ADELIQALKEPVNQRWVNSFARPEASTQKQPQCRALTPAGQVAAETGSPKAGSTGSQGEK
VRRSTLSERPGELGKPSNNKQLVFQSVGKELGKNLRVELVLHGGGSGGARSKQLQQDRPD
F

>gi568815581r:48626793_48828593|GENSCAN_predicted_CDS_5|726_bp
atggcggccgtcagcgctctcgcccagtttttccattgttcttctctgaagtctggaaag
ggcctgcggggctatagctctcagcggccggagcctgcgcttggcaggggacggcctgga
ggacggcctagtgtggctgcctcgggaatcacctgccctgggagtgcaggccaagctttg
gacgagggaaagcacagactgacgccgaccagcccatcctccccggccttgcactgcccg
agatccgtgcaggtcaagcgggcaagtgccatccgaaacagtgccatgcgaaacagtgcc
cacaagcacccacctgcaaaaagacacagtgacggagcaacagcagctgcgtccttacac
gcagatgagctgatccaggctttgaaggagccagttaaccagagatgggttaattccttt
gccagaccagaggcgtccacccagaagcagccccagtgtcgcgcattgactcccgccggc
caagtcgccgccgaaacaggatctcctaaagcgggctccaccgggtcccagggcgaaaag
gtccgaagatctacgctgtcggaaagacctggagaactcgggaagcccagcaacaacaaa
cagcttgtcttccagagtgtggggaaagagctggggaagaatctaagggtggagctagtg
ttgcacggtggtggcagtgggggtgcccgaagcaagcagctgcagcaagacagaccggat
ttctaa

>gi568815581r:48626793_48828593|GENSCAN_predicted_peptide_6|1035_aa
MGWDCGLARWARVGLRERAAVQPLAPGCAAMSFAFPPFIPQGYKTAFGVGTNKIVTQDNR
WELPGAWYFPRASSQAREMPQCPTLESQEGENSEEKGDSSKEDPKETVALAFVRENPGAQ
NGLQNAQQQGKKKRKKKRLGLKAGEWGAMLMIGDQSIQLPAFLSSIVRRAAQQYGFREGG
EDDDWTLYWTDYSVSLERVMEMKSYQKINHFPGMSEICRKDLLARNMSRMLKMFPKDFRF
FPRTWCLPADWGDLQTYSRSRKNKTYICKPDSGCQGKGIFITRTVKEIKPGEDMICQLYI
SKPFIIDGFKFDLRIYVLVTSCDPLRIFVYNEGLARFATTSYSRPCTDNLDDICMHLTNY
SINKHSSNFSRDAHSGSKRKLSTFSAYLEDHSYNVEQIWRDIEDVIIKTLISAHPIIRHN
YHTCFPNHTLNSACFEILGFDILLDHKLKPWLLEVNHSPSFSTDSRLDKEVKDGLLYDTL
VLINLESCDKKKVLEEERQRGQFLQQCCSREMRIEEAKGFRAVQLKKTETYEKENCGGFR
LIYPSLNSEKYEKFFQDNNSLFQNTVASRAREEYARQLIQELRLKREKKPFQMKKKVEMQ
GESAGEQVRKKGMRGWQQKQQQKDKAATQASKQYIQPLTLVSYTPDLLLSVRGERKNETD
SSLNQEAPTEEASSVFPKLTSAKPFSSLPDLRNINLSSSKLEPSKPNFSIKEAKSASAVN
VFTGTVHLTSVETTPESTTQLSISPKSPPTLAVTASSEYSGPETDRVVSFKCKKQQTPPH
LTQKKMLKSFLPTKSKSFWESPNTNWTLLKSDMNKPHLISELLTKLQLSGKLSFFPAHYN
PKLGMNNLSQNPSLPGECHSRSDSSGEKRQLDVSSLLLQSPQSYNVTLRDLLVIATPAQL
DPRPCRSHASAMRDPCMQDQEAYSHCLISGQKGYKATSGVVFQRRTHDFQESKALSPPTE
LCQLVFVSKIKDEECDPFLLHSLFLSLIPGETFGAYEAEVEEGCAEHSASVRQKNAVAVP
APKECAVEEGGSTDN

>gi568815581r:48626793_48828593|GENSCAN_predicted_CDS_6|3108_bp
atgggctgggactgcggcttggctcgctgggcaagggtagggctgcgggagcgagcggcg
gtccagcccctggcgcccgggtgcgcggccatgtcttttgcctttcctccttttattcct
caaggctacaagactgcttttggtgttggcaccaacaaaattgttacgcaagacaatagg
tgggaactaccaggggcctggtatttccccagagcctcctcccaggccagggagatgcca
cagtgcccgactttggaaagccaggaaggggaaaactccgaagagaagggggacagttcc
aaagaagatccaaaagaaaccgtcgcgctggcttttgtgagagagaacccaggggcacaa
aacggacttcagaatgcccagcagcaaggcaagaagaagaggaagaaaaagaggttagga
ttgaaagctggggaatggggagccatgttgatgattggtgatcaatctatccagctgccg
gcctttctttcttcaatagtgcgcagggctgcccaacagtacggctttagagagggaggg
gaagacgatgactggactctctattggacagattactcagtgtcactggagcgggtgatg
gaaatgaaaagttaccagaagatcaatcacttccccgggatgagtgaaatctgccggaag
gacttgctggccaggaacatgagccgcatgttaaagatgttccctaaagatttccgcttt
ttccctaggacctggtgtcttcctgctgactggggagatttgcagacctacagcaggtca
agaaaaaataagacatacatttgtaagccggattcgggctgccaagggaaaggtatattc
atcacccggacagtgaaagaaatcaaaccaggggaggatatgatctgtcagctgtatatt
tcaaagccctttatcattgatgggtttaagtttgacctacggatttatgtactggtgaca
tcctgtgaccctctcaggatttttgtgtacaatgaaggactggcccgctttgcgacgacc
tcttactcccgcccttgcacagacaacctggatgatatctgcatgcacctgactaattat
tccattaataagcacagttcaaatttcagtcgagatgcacactctggcagtaagaggaag
ctctccaccttcagtgcatacttggaggaccacagctacaacgtggagcagatatggagg
gatattgaggacgtcatcatcaagaccctcatctcggcccaccccatcatcaggcataac
taccacacctgcttccccaaccacacactcaacagcgcctgctttgagatcctgggcttt
gacattttgttggaccacaaactcaaaccctggctgctggaggtcaaccactctccaagc
ttctccaccgactctcggttggataaagaggtgaaagatggtctgctgtatgacacctta
gtcctgatcaacctggaaagctgtgacaagaagaaagtcttggaggaggagagacaacgg
gggcagttcctgcagcagtgttgttctcgggagatgaggattgaggaagccaagggtttc
cgggccgtgcagttaaagaaaactgaaacgtatgagaaggaaaactgtggagggttccga
ctgatttatcccagtctgaattcggagaagtatgagaagtttttccaggacaacaactcc
ctcttccagaatactgttgcttccagggctcgggaggagtatgcccggcaactgatccag
gagctgagactaaaacgggagaaaaagcccttccaaatgaagaagaaggtagagatgcag
ggggaatcggcaggcgagcaagtgagaaagaagggcatgaggggctggcaacagaaacaa
cagcagaaagacaaggccgccacccaagcctccaaacagtacatccagccattgacatta
gtatcctacacacctgacttgctcttgagtgtcagaggtgaaaggaaaaatgaaacagac
agcagcctcaaccaggaggctcccacggaggaggccagctctgttttccccaagctgacg
tctgcgaagcccttcagttctctacccgatctgaggaatatcaatctcagcagctcgaag
ttggagcccagtaaacccaacttcagcatcaaggaggccaagtctgcctctgcagtgaac
gtattcactggcactgtgcacttaacctccgtagaaaccaccccagaatccaccacccaa
ctctcaatctccccaaagtctccgccaaccctggctgtgaccgccagctctgagtacagt
ggcccagagacggacagggtggtatcctttaaatgcaagaagcagcagacccctccacac
ttaacccagaagaaaatgttaaaatcttttctgcccacaaaatccaagagcttctgggag
agtccgaacacaaactggactttgctaaagagtgacatgaacaagccacatttgatatcc
gagctactcaccaagcttcaactgagtgggaagctctccttcttcccagctcactacaac
cccaagctggggatgaataacctgtcacaaaacccctccctgcctggggagtgccactcc
cgcagtgacagctctggcgagaagaggcagctggatgtgtcctccctcctcttgcagagt
cctcagagctataatgttactctgagggacctgctggtgattgccactccagcccaactg
gatccaaggccttgtagaagccacgcaagtgctatgagggacccatgtatgcaggatcaa
gaagcatacagccattgcctgatctctggccaaaaaggatataaagcaacttcgggagta
gtgtttcagagaaggactcatgatttccaggagtcaaaagccctcagtccaccaacagaa
ctatgccagttggtcttcgtctccaagataaaagatgaggaatgtgatccatttttgctt
cactcactcttcctgagtctgatccctggtgagacctttggggcatatgaggcagaggtg
gaagaaggctgtgcagagcacagtgcttctgtgagacagaaaaatgctgtggcagttcct
gctcccaaagagtgtgcagtggaggaaggcgggtccacagataactag