Result of FASTA (omim) for pF1KB8911
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8911, 250 aa
  1>>>pF1KB8911 250 - 250 aa - 250 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5684+/-0.000342; mu= 7.0949+/- 0.022
 mean_var=212.5662+/-44.577, 0's: 0 Z-trim(121.4): 197  B-trim: 32 in 1/55
 Lambda= 0.087968
 statistics sampled from 37642 (37876) to 37642 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.444), width:  16
 Scan time:  7.720

The best scores are:                                      opt bits E(85289)
NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [ ( 250) 1718 229.8 3.6e-60
NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [ ( 260)  714 102.4 8.5e-22
NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [ ( 272)  592 86.9   4e-17
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352)  475 72.2 1.4e-12
NP_002139 (OMIM: 142984,192950) homeobox protein H ( 340)  432 66.7   6e-11
NP_059105 (OMIM: 605560) homeobox protein Hox-C10  ( 342)  427 66.1 9.4e-11
NP_061824 (OMIM: 142957) homeobox protein Hox-A10  ( 410)  416 64.8 2.8e-10
NP_067015 (OMIM: 142986) homeobox protein Hox-D11  ( 338)  368 58.6 1.7e-08
NP_005514 (OMIM: 142958,605432) homeobox protein H ( 313)  346 55.8 1.1e-07
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222)  333 53.9 2.7e-07
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289)  321 52.5 9.4e-07
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290)  318 52.2 1.2e-06
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  321 52.7 1.3e-06
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  321 52.7 1.3e-06
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  321 52.7 1.3e-06
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  321 52.7 1.3e-06
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  321 52.7 1.3e-06
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  321 52.7 1.3e-06
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  321 52.7 1.3e-06
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242)  313 51.4 1.7e-06
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242)  310 51.1 2.2e-06
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243)  310 51.1 2.2e-06
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243)  310 51.1 2.2e-06
NP_055027 (OMIM: 605559) homeobox protein Hox-C11  ( 304)  309 51.0 2.8e-06
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217)  306 50.5 2.9e-06
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270)  296 49.3 8.1e-06
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233)  294 49.0 8.8e-06
NP_000513 (OMIM: 140000,142959,176305) homeobox pr ( 388)  291 48.9 1.6e-05
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230)  284 47.7 2.1e-05
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320)  286 48.1 2.2e-05
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224)  282 47.5 2.5e-05
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224)  282 47.5 2.5e-05
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224)  282 47.5 2.5e-05
NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106)  275 46.2 2.8e-05
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288)  282 47.6 2.9e-05
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269)  276 46.8 4.7e-05
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430)  279 47.4 4.9e-05
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255)  275 46.6   5e-05
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301)  276 46.8 5.1e-05
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  276 47.0 6.4e-05
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  276 47.0 6.4e-05
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  276 47.0 6.4e-05
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432)  276 47.0 6.4e-05
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  276 47.0 6.4e-05
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  276 47.0 6.4e-05
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  276 47.0 6.4e-05
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  276 47.0 6.4e-05
NP_067016 (OMIM: 142988) homeobox protein Hox-D12  ( 270)  271 46.2 7.3e-05
NP_001795 (OMIM: 600746) homeobox protein CDX-1 [H ( 265)  270 46.0 7.9e-05
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299)  269 46.0 9.3e-05


>>NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [Homo  (250 aa)
 initn: 1718 init1: 1718 opt: 1718  Z-score: 1201.2  bits: 229.8 E(85289): 3.6e-60
Smith-Waterman score: 1718; 100.0% identity (100.0% similar) in 250 aa overlap (1-250:1-250)

               10        20        30        40        50        60
pF1KB8 MSISGTLSSYYVDSIISHESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 MSISGTLSSYYVDSIISHESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ASWAPLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 ASWAPLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 LLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 HARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 HARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKM
              190       200       210       220       230       240

              250
pF1KB8 KKMNKEQGKE
       ::::::::::
NP_076 KKMNKEQGKE
              250

>>NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [Homo  (260 aa)
 initn: 769 init1: 485 opt: 714  Z-score: 512.3  bits: 102.4 E(85289): 8.5e-22
Smith-Waterman score: 778; 51.9% identity (68.7% similar) in 262 aa overlap (1-247:1-254)

               10        20         30         40         50       
pF1KB8 MSISGTLSSYYVDSIISHESEDAPPAKFP-SGQY-ASSRQPGHAEHL-EFPSCSFQPKAP
       :: .: .:.:::::.:::..::   ..:: .: . :..:  : .    .:::::: ::  
NP_008 MSATGPISNYYVDSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKPA
               10        20        30        40        50        60

        60        70        80        90       100           110   
pF1KB8 VFGASWAPLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAP----GQGQ
       ::..::::.  ..:     :::::  ::    :..::.::::::   . . :    :  .
NP_008 VFSTSWAPVPSQSS----VVYHPY-GPQPHLGADTRYMRTWLEPLSGAVSFPSFPAGGRH
               70            80         90       100       110     

           120            130       140       150       160        
pF1KB8 AAVKAEPLLG-----APGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKE
        :.: .   :     .:::   .. :.: .  : :.    . :     .     ::. ::
NP_008 YALKPDAYPGRRADCGPGE--GRSYPDY-MYGSPGELRDRAPQTLPSPEADALAGSKHKE
         120       130         140        150       160       170  

      170          180       190       200       210       220     
pF1KB8 RP---DQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLS
       .    : .:: :::.::::.::::::::::::::::::::::::::::::.::::.:::.
NP_008 EKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLT
            180       190       200       210       220       230  

         230       240       250   
pF1KB8 ERQVKIWFQNRRMKMKKMNKEQGKE   
       :::::::::::::::::::::.      
NP_008 ERQVKIWFQNRRMKMKKMNKEKTDKEQS
            240       250       260

>>NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [Homo  (272 aa)
 initn: 704 init1: 485 opt: 592  Z-score: 428.4  bits: 86.9 E(85289): 4e-17
Smith-Waterman score: 761; 49.5% identity (69.5% similar) in 275 aa overlap (1-250:1-271)

               10        20        30          40             50   
pF1KB8 MSISGTLSSYYVDSIISHESEDAPPAKFPSGQYASSR--QPGH-----AEHLEFPSCSFQ
       :. .:.:..:::::..   . ::   ..  :.:: .   :: .     ::: .:  ::::
NP_689 MATTGALGNYYVDSFLL--GADAAD-ELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQ
               10          20         30        40        50       

            60        70              80        90           100   
pF1KB8 PKAPVFGASWAPLSPHASGSLPS-VYH-----PYIQPQGVPPA----ESRYLRTWLEPAP
        :: :::::: :.   .....:. :::     ::..::. : :    ..::.:.::::.:
NP_689 SKATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQA-PVAAAAPDGRYMRSWLEPTP
        60        70        80        90        100       110      

              110       120       130       140        150         
pF1KB8 RG---EAAPGQGQAAVKAEPLLGAPGELLKQGTPEYSLETSA-GREAVLSNQRPGYG---
        .    . :..   ..: ::: .  :.     :   ::   : :   :  ...:. :   
NP_689 GALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFS
        120       130       140       150       160       170      

         160       170       180       190       200       210     
pF1KB8 -DNKICEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRR
        .:   :.. ::   : .::.::::::::.:::::::::.::::::::::::::::::::
NP_689 ENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRR
        180       190       200       210       220       230      

         220       230       240       250 
pF1KB8 HEVARLLNLSERQVKIWFQNRRMKMKKMNKEQGKE 
       .::::::::.:::::::::::::::::.::...:. 
NP_689 YEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
        240       250       260       270  

>>NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [Homo  (352 aa)
 initn: 674 init1: 467 opt: 475  Z-score: 346.8  bits: 72.2 E(85289): 1.4e-12
Smith-Waterman score: 536; 39.9% identity (57.6% similar) in 278 aa overlap (54-247:70-347)

            30        40        50        60          70        80 
pF1KB8 PPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFGASWA--PLSPHASGSLPSVYHPY
                                     :.. ::.:::.  : .: :.... ..::::
NP_055 PPGPGAQGRPAGVADGPAATAAEFASCSFAPRSAVFSASWSAVPSQPPAAAAMSGLYHPY
      40        50        60        70        80        90         

              90          100                  110       120       
pF1KB8 IQPQGVPPAES---RYLRTWLEPAPR-----------GEAAPGQGQAAVKAEPLLG----
       . :  .  . :   ::.:.:.:: :            : ..::.: .   . :  :    
NP_055 VPPPPLAASASEPGRYVRSWMEPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYG
     100       110       120       130       140       150         

                                            130         140        
pF1KB8 -------APGELL--------------------------KQGT--PEYSLETSAGREAVL
              ::.                             .::.  ::.: ..   ..:. 
NP_055 IKPETRAAPAPATAASTTSSSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAA
     160       170       180       190       200       210         

      150                          160            170              
pF1KB8 SN--QRPGYG-----------------DNKI--CEGSEDKER---PDQ-----TNPSANW
       ..    :: :                 :. :  :  .:....   :.:     .::.:::
NP_055 ATGGTGPGAGIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANW
     220       230       240       250       260       270         

     180       190       200       210       220       230         
pF1KB8 LHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMK
       .::::.::::::::::::::::::::::::::::::.::::.:::.::::::::::::::
NP_055 IHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMK
     280       290       300       310       320       330         

     240       250  
pF1KB8 MKKMNKEQGKE  
       ::::.::.     
NP_055 MKKMSKEKCPKGD
     340       350  

>>NP_002139 (OMIM: 142984,192950) homeobox protein Hox-D  (340 aa)
 initn: 478 init1: 401 opt: 432  Z-score: 317.5  bits: 66.7 E(85289): 6e-11
Smith-Waterman score: 436; 39.4% identity (64.2% similar) in 218 aa overlap (35-246:125-327)

           10        20        30        40        50         60   
pF1KB8 GTLSSYYVDSIISHESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQ-PKAPVFGASW
                                     :.. :.. ..:   ::  . :..:: :  .
NP_002 TQQVPTCSFTTNIKEESNCCMYSDKRNKLISAEVPSY-QRLVPESCPVENPEVPVPG--Y
          100       110       120       130        140       150   

             70        80        90       100       110       120  
pF1KB8 APLSP-HASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEPLL
         ::  .:.:.     .   .:.:   .        :.  ::: : :  . : .. :  .
NP_002 FRLSQTYATGKTQEYNN---SPEGSSTV-------MLQLNPRGAAKPQLSAAQLQMEKKM
             160          170              180       190       200 

            130       140       150       160           170        
pF1KB8 GAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKIC----EGSEDKERPDQTNPSAN
       . :  .  :   . :   :   .. : ..:   .. ..     . .:.::.  . .:..:
NP_002 NEP--VSGQEPTKVSQVESPEAKGGLPEERSCLAEVSVSSPEVQEKESKEEIKSDTPTSN
               210       220       230       240       250         

      180       190       200       210       220       230        
pF1KB8 WLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRM
       :: :.:.:::::::::.:::::::::::::::::.:: :... .::..::::::::::::
NP_002 WLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRM
     260       270       280       290       300       310         

      240       250         
pF1KB8 KMKKMNKEQGKE         
       :.:::..:             
NP_002 KLKKMSRENRIRELTANLTFS
     320       330       340

>>NP_059105 (OMIM: 605560) homeobox protein Hox-C10 [Hom  (342 aa)
 initn: 429 init1: 404 opt: 427  Z-score: 314.0  bits: 66.1 E(85289): 9.4e-11
Smith-Waterman score: 451; 41.7% identity (65.4% similar) in 211 aa overlap (43-246:140-329)

             20        30        40        50        60        70  
pF1KB8 DSIISHESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFGASWAPLSPHASG
                                     :: : :  :.   .: ..:     .:: ::
NP_059 VCCMYSAEKRAKSGPEAALYSHPLPESCLGEH-EVPVPSYYRASPSYSA--LDKTPHCSG
     110       120       130       140        150         160      

             80        90             100        110       120     
pF1KB8 SLPSVYHPYIQPQGVPPA----ESRYL--RTWLEPAPRGEA-APGQGQAAVKAEPLLGAP
       .  .   :. :  .. :     ::  :  .. .  .:.... .:. ..  .:.:  :..:
NP_059 A-NDFEAPFEQRASLNPRAEHLESPQLGGKVSFPETPKSDSQTPSPNE--IKTEQSLAGP
         170       180       190       200       210         220   

         130       140       150       160       170       180     
pF1KB8 GELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWLHARSS
            .:.:  : .    ..:  ... :  .::      : ::.    : ..::: :.:.
NP_059 -----KGSPSESEK----ERAKAADSSPDTSDN------EAKEEIKAENTTGNWLTAKSG
                230           240             250       260        

         190       200       210       220       230       240     
pF1KB8 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNK
       :::::::::.:::::::::::::::::.:: :... .::..:::::::::::::.::::.
NP_059 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNR
      270       280       290       300       310       320        

         250         
pF1KB8 EQGKE         
       :             
NP_059 ENRIRELTSNFNFT
      330       340  

>>NP_061824 (OMIM: 142957) homeobox protein Hox-A10 [Hom  (410 aa)
 initn: 447 init1: 390 opt: 416  Z-score: 305.6  bits: 64.8 E(85289): 2.8e-10
Smith-Waterman score: 416; 47.8% identity (68.6% similar) in 159 aa overlap (100-246:244-397)

      70        80        90       100            110       120    
pF1KB8 ASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAP-----GQGQAAVKAEPLLGA
                                     .:  ::   :     :...:: : . : . 
NP_061 FRLSQAYGTAKGYGSGGGGAQQLGAGPFPAQPPGRGFDLPPALASGSADAARKERALDSP
           220       230       240       250       260       270   

                 130       140       150       160       170       
pF1KB8 PGELL-------KQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSA
       :   :       .::  :    .::..:  ::   :. ....     .:.   .. . .:
NP_061 PPPTLACGSGGGSQGDEEAHASSSAAEE--LS---PAPSESSKASPEKDSLGNSKGENAA
           280       290       300            310       320        

       180       190       200       210       220       230       
pF1KB8 NWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRR
       ::: :.:.:::::::::.:::::::::::::::::.:: :..: ..:..:::::::::::
NP_061 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRR
      330       340       350       360       370       380        

       240       250         
pF1KB8 MKMKKMNKEQGKE         
       ::.::::.:             
NP_061 MKLKKMNRENRIRELTANFNFS
      390       400       410

>>NP_067015 (OMIM: 142986) homeobox protein Hox-D11 [Hom  (338 aa)
 initn: 369 init1: 312 opt: 368  Z-score: 273.6  bits: 58.6 E(85289): 1.7e-08
Smith-Waterman score: 388; 38.2% identity (59.3% similar) in 204 aa overlap (48-247:137-328)

        20        30        40        50        60          70     
pF1KB8 HESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFGASWAPLSPH--ASGSLP
                                     :.  :.   :: .:   : .:   ::.   
NP_067 YAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAASNFYS
        110       120       130       140       150       160      

          80         90       100       110        120       130   
pF1KB8 SVYHPYIQPQGVPP-AESRYLRTWLEPAPRGEAAPGQGQ-AAVKAEPLLGAPGELLKQGT
       .: .  : :::     :.     .  : :    :: : . :: :..:  :: :     :.
NP_067 AVGRNGILPQGFDQFYEAAPGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGG---GGGS
        170       180       190       200       210          220   

           140       150       160       170       180       190   
pF1KB8 PEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWLHARSSRKKRCPYT
       :    ... : :   . .  : ::..   :    :.      :.. .  . :::::::::
NP_067 P--CTKATPGSEPKGAAEGSG-GDGEGPPGEAGAEK------SSSAVAPQRSRKKRCPYT
             230       240        250             260       270    

           200       210       220       230       240       250   
pF1KB8 KYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKEQGKE   
       :::  :::.::.::.:.....: ...:.:::..::::::::::::: ::.:...      
NP_067 KYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTG
          280       290       300       310       320       330    

NP_067 NPLF
           

>>NP_005514 (OMIM: 142958,605432) homeobox protein Hox-A  (313 aa)
 initn: 370 init1: 300 opt: 346  Z-score: 259.0  bits: 55.8 E(85289): 1.1e-07
Smith-Waterman score: 357; 33.1% identity (61.3% similar) in 248 aa overlap (24-247:69-303)

                      10        20         30           40         
pF1KB8        MSISGTLSSYYVDSIISHESEDAPPAKF-PSGQYA---SSRQPGHAEHLEFPS
                                     : .:. : :. :   :...  : . :. ::
NP_005 SSRPMTYSYSSNLPQVQPVREVTFREYAIEPATKWHPRGNLAHCYSAEELVHRDCLQAPS
       40        50        60        70        80        90        

      50        60        70        80         90       100        
pF1KB8 CSFQPKAPVFGASWAPLSPHASGSLPSVYHPYIQPQGV-PPAESRYLRTWLEPAPRGEAA
        .  : . :.. : : .  : . .. : ..  .  .:: : : .....:    .:.. :.
NP_005 AAGVP-GDVLAKSSANVYHHPTPAVSSNFYSTVGRNGVLPQAFDQFFET-AYGTPENLAS
      100        110       120       130       140        150      

         110       120          130       140       150       160  
pF1KB8 ---PGQGQAAVKAEPL---LGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICE
          ::. ..: :. :     .: .     :.:  :   :.:          : :  .   
NP_005 SDYPGD-KSAEKGPPAATATSAAAAAAATGAPATSSSDSGG----------GGGCRETAA
        160        170       180       190                 200     

               170        180                190       200         
pF1KB8 GSEDKER---PDQTN-PSANWLHARS---------SRKKRCPYTKYQTLELEKEFLFNMY
       ..:.:::   :.... : ..  :...         .:::::::::::  :::.::.:..:
NP_005 AAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVY
         210       220       230       240       250       260     

     210       220       230       240       250       
pF1KB8 LTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKEQGKE       
       .....: ...:.:::..::::::::::::: ::.:...          
NP_005 INKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDRLQYYSANPLL
         270       280       290       300       310   

>>NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [Homo  (222 aa)
 initn: 328 init1: 284 opt: 333  Z-score: 251.8  bits: 53.9 E(85289): 2.7e-07
Smith-Waterman score: 333; 37.0% identity (57.8% similar) in 211 aa overlap (48-250:17-220)

        20        30        40        50        60        70       
pF1KB8 HESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFGASWAPLSPHASGSLP-S
                                     :. ..:  .   .:: .  : .  :.:  :
NP_061               MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLS
                             10        20        30        40      

         80            90       100       110       120       130  
pF1KB8 VYHPYIQP----QGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEPLLGAPGELLKQG
       .  :   :    .::  : .   .   .::  . ::::.. .  .: ::   :: . .: 
NP_061 ITFPPPAPSNSLHGVDMAANPRAHP-DRPACSAAAAPGHAPGRDEAAPL--NPG-MYSQK
         50        60        70         80        90          100  

            140       150       160       170       180            
pF1KB8 TPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWLHAR---SSRKKR
       . . .::  :   . .....   :.     :  .   : :  :  . ::     .....:
NP_061 AARPALEERAKSSGEIKEEQAQTGQPA---GLSQPPAPPQIYPWMTKLHMSHETDGKRSR
            110       120          130       140       150         

     190       200       210       220       230       240         
pF1KB8 CPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKEQGK
         ::.:::::::::: :: :::: :: :.:  : :.:::.:::::::::: :: .: ..:
NP_061 TSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSK
     160       170       180       190       200       210         

     250  
pF1KB8 E  
       :  
NP_061 EAL
     220  




250 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:27:55 2016 done: Fri Nov  4 16:27:56 2016
 Total Scan time:  7.720 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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