GENSCAN 1.0	Date run:  4-Nov-116	Time: 16:13:21

Sequence gi568815597r:153443762_153644794 : 201033 bp : 48.05% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -    947    942    6                               1.05
 1.02 Term -   7721   7527  195  2  0   70   47   109 0.651   2.41
 1.01 Init -  11063  10194  870  2  0   57   13   188 0.308   2.75
 1.00 Prom -  11200  11161   40                              -5.46

 2.03 PlyA -  14006  14001    6                               1.05
 2.02 Term -  14209  14045  165  1  0  118   46   195 0.998  16.22
 2.01 Init -  15252  15112  141  0  0   86   56   184 0.866  15.13
 2.00 Prom -  16927  16888   40                              -7.96

 3.04 PlyA -  20057  20052    6                               1.05
 3.03 Term -  21174  20953  222  0  0   57   48   123 0.727   2.12
 3.02 Intr -  22309  22178  132  1  0   62   90   107 0.556   9.14
 3.01 Init -  30718  30653   66  1  0   62  100    16 0.044   1.27
 3.00 Prom -  39259  39220   40                              -0.36

 4.00 Prom +  44424  44463   40                              -3.86
 4.01 Init +  56122  56263  142  0  1   25  116    78 0.357   2.83
 4.02 Intr +  59558  59672  115  0  1   69  -29   123 0.351  -1.79
 4.03 Intr +  60306  60387   82  0  1   90   56    68 0.791   3.44
 4.04 Intr +  62791  62881   91  0  1  130   91    35 0.827   7.57
 4.05 Term +  63890  64008  119  0  2  118   42    26 0.636  -0.30
 4.06 PlyA +  65322  65327    6                               1.05

 5.04 PlyA -  65351  65346    6                               1.05
 5.03 Term -  78947  78859   89  0  2   59   43   100 0.349   0.42
 5.02 Intr -  82056  81952  105  1  0  105   55    75 0.540   6.09
 5.01 Init -  82768  82705   64  1  1   46   47    54 0.288  -1.59
 5.00 Prom -  85241  85202   40                              -5.76

 6.07 PlyA -  88978  88973    6                               1.05
 6.06 Term -  91069  90935  135  1  0  -13   48   246 0.983   8.52
 6.05 Intr -  91599  91441  159  0  0   40  109   248 0.012  22.28
 6.04 Intr -  93434  93395   40  1  1  129   53   -26 0.010  -3.77
 6.03 Intr -  93675  93539  137  0  2   27   -1   338 0.010  18.17
 6.02 Intr -  96444  96293  152  1  2   91   92    97 0.524  10.28
 6.01 Init -  97663  97624   40  1  1   57  103    -2 0.355  -2.45
 6.00 Prom -  99437  99398   40                              -7.76

 7.03 PlyA -  99881  99876    6                               1.05
 7.02 Term - 100162  99998  165  1  0  120   48   280 0.999  25.12
 7.01 Init - 101033 100893  141  2  0   93   84   236 0.660  23.83
 7.00 Prom - 102080 102041   40                              -4.66

 8.05 PlyA - 103587 103582    6                               1.05
 8.04 Term - 104085 103921  165  0  0   77   38   219 0.890  13.72
 8.03 Intr - 104729 104584  146  0  2   74  105   254 0.970  25.70
 8.02 Intr - 107663 107595   69  0  0  119   33    56 0.768   2.35
 8.01 Init - 109548 109485   64  0  1   68  105    66 0.923   5.63
 8.00 Prom - 117365 117326   40                              -5.96

 9.05 PlyA - 117606 117601    6                               1.05
 9.04 Term - 117830 117678  153  2  0  106   48   240 0.999  19.72
 9.03 Intr - 120120 119973  148  2  1   49   84   195 0.501  15.44
 9.02 Intr - 123049 122941  109  2  1   60  100    48 0.762   2.54
 9.01 Init - 124142 124130   13  2  1   73  105     8 0.598   1.40
 9.00 Prom - 141608 141569   40                              -4.06

10.09 PlyA - 141616 141611    6                               1.05
10.08 Term - 163931 163773  159  2  0  100   44   389 0.999  33.64
10.07 Intr - 164416 164238  179  2  2   95   99   286 0.953  30.04
10.06 Intr - 166955 166895   61  2  1  107   81    15 0.318   1.01
10.05 Intr - 171261 171139  123  0  0  101  -45   143 0.011   3.08
10.04 Intr - 171620 171474  147  2  0  110   72   219 0.992  22.93
10.03 Intr - 172546 172534   13  0  1   85  110    10 0.154  -2.32
10.02 Intr - 175277 175138  140  2  2  114   27   234 0.133  19.16
10.01 Init - 182711 182559  153  2  0   47  102   203 0.459  17.58
10.00 Prom - 183033 182994   40                             -12.01

11.00 Prom + 183762 183801   40                              -9.16
11.01 Init + 186761 186901  141  1  0   77   50   307 0.793  25.93
11.02 Intr + 187937 188051  115  1  1  134  -70   222 0.044  11.02
11.03 Intr + 190284 190381   98  1  2   25   88    99 0.076   3.33
11.04 Intr + 190507 190582   76  0  1   73  109     4 0.259   0.09
11.05 Intr + 192811 192892   82  2  1   80   77   118 0.290   8.60
11.06 Intr + 194534 194687  154  2  1   16   94   122 0.158   5.67
11.07 Intr + 198482 198503   22  1  1   78   86    11 0.017  -2.98
11.08 Intr + 199466 199603  138  0  0   54   88    68 0.017   3.84

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  91578  91441  138  0  0   87  109   238 0.983  25.94
S.002 Term -  93675  93535  141  0  0   27   47   351 0.934  22.83
S.003 Term - 171261 171124  138  0  0  101   54   147 0.985  10.56
S.004 Term - 175277 175134  144  2  0  114   42   248 0.861  20.71
S.005 Term + 187937 188080  144  1  0  134   53   216 0.892  20.61


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:153443762_153644794|GENSCAN_predicted_peptide_1|354_aa
MCHSALEGGHFRARPKGTGISVILIRIQPLFLSQKNKVGGITLPDLKLYYKAAVTKTAWY
WYQNTDIDQWNRTEPSEIMPHIYNYLIFDKPDKNKKWGKDSLFNKWCWENWLAICRKLKL
DPFLTPYTKINSRWIKDLNVRPKTIKTLEENLGNTIQDIGMGKDFMSKTAKAKATKAKID
KWDLIKLKSFCTTKETTIRLNRQPTEWEKIFAIYSSDKGLISRIYNELKQIYKKKTNNPI
KKWAKDMNRHFSKDDIYAANRHMKKCSSSLAIREMQIKTTMRYHLTPVRMTNYPNKTYKN
MNKNQKIICFEATESYQSDQDLKALVIQEKEDSINALNIKAASLPEKFISCQVV

>gi568815597r:153443762_153644794|GENSCAN_predicted_CDS_1|1065_bp
atgtgtcattctgcattggaaggaggacattttagagcaaggcctaagggcacaggtatt
agtgtcatattgatcagaattcaacctttgttcctaagccaaaagaacaaagttggaggc
atcacgctacctgacttaaaactatactacaaggctgcagtgaccaaaacagcatggtac
tggtaccaaaacacagatatagaccaatggaacagaacagagccctcagaaataatgccg
catatctacaactatctgatctttgacaaacctgacaaaaacaagaaatggggaaaggat
tcactatttaataagtggtgctgggaaaactggctagccatatgtagaaagctgaagctg
gatcccttccttacaccttatacaaaaattaattcaagatggattaaagacttaaatgtt
agacctaaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacataggc
atgggcaaggacttcatgtctaaaacagcaaaagcaaaggcaacaaaagccaaaattgac
aaatgggatctaattaaactaaagagcttctgcacaacaaaagaaactaccatcagactg
aacaggcagcctacagaatgggagaaaatttttgcaatctactcatctgacaaagggcta
atatcaagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatc
aaaaagtgggcaaaggatatgaacagacacttctcaaaagacgacatttatgcagccaac
agacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaactaca
atgagataccatctcacaccagttagaatgactaattatcccaataaaacatataaaaat
atgaataaaaatcagaaaattatctgcttcgaagcaacagaaagctaccaaagtgaccag
gacttgaaggctctggttatccaagagaaagaagactcgatcaatgcactgaacattaaa
gctgcttctcttcctgagaaatttatcagttgtcaagtagtttga

>gi568815597r:153443762_153644794|GENSCAN_predicted_peptide_2|101_aa
MSNTQAERSIIGMIDMFHKYTRRDDKIEKPSLLTMMKENFPNFLSACDKKGTNYLADVFE
KKDKNEDKKIDFSEFLSLLGDIATDYHKQSHGAAPCSGGSQ

>gi568815597r:153443762_153644794|GENSCAN_predicted_CDS_2|306_bp
atgagcaacactcaagctgagaggtccataataggcatgatcgacatgtttcacaaatac
accagacgtgatgacaagattgagaagccaagcctgctgacgatgatgaaggagaacttc
cccaacttccttagtgcctgtgacaaaaagggcacaaattacctcgccgatgtctttgag
aaaaaggacaagaatgaggataagaagattgatttttctgagtttctgtccttgctggga
gacatagccacagactaccacaagcagagccatggagcagcgccctgttccgggggcagc
cagtga

>gi568815597r:153443762_153644794|GENSCAN_predicted_peptide_3|139_aa
MIDLFHNNIQEDDTLDKSGLSKELLVKISFLKSCKTAARSGTHNLNKGENRQGRPSHVEP
PRNSGENSLSVSLSRSPNCCTSPEMQLANTTQKDPKQNSWLSRNIPVAPSALSLSPWLLE
VLYGLLKGRPYKASPGSPT

>gi568815597r:153443762_153644794|GENSCAN_predicted_CDS_3|420_bp
atgattgatctatttcacaataacatccaagaagatgatacactagataagtcaggtctg
tcaaaggagcttttggtgaagatctcttttttaaaaagctgcaagactgctgcccgaagt
gggacacacaacctaaataagggcgagaaccggcaaggacggcccagccacgtggaaccg
cctcgcaactctggcgagaactctctctctgtctctctgtcccgctcccccaactgctgc
acgagtccagagatgcagctggccaacaccacccagaaggaccccaaacagaacagctgg
ctgtctcggaacattcccgtggctccctctgccctgtccctctcaccgtggctcctggaa
gtgctctatggcctattgaaaggacgcccctacaaagcttcccctggttcccccacctga

>gi568815597r:153443762_153644794|GENSCAN_predicted_peptide_4|182_aa
MAWALRNVAGPCQEGFPSTSASGGNQPSSNSQTGVSIRLVKPPGKRKGADPVGQQFSKCG
PQNGSNNGTWDLTRNTESQATTDLLVTLQGVPTSKKTLTRCSPLTLDFSVSKTDYKGLSK
VGMVRVPGIKGQGYRISRACAVTAPFSTQKPSWKQPSPPGPVILSPVVHNSFYKPSCNGM
LK

>gi568815597r:153443762_153644794|GENSCAN_predicted_CDS_4|549_bp
atggcatgggcactgaggaatgtggctggcccctgccaggaagggttccccagcacctct
gcttccgggggtaaccagcccagctccaactcccagacaggtgtatctatccgactggtg
aagccaccagggaagagaaaaggagcagaccctgtaggacagcagttctcaaaatgtggt
ccccagaacggcagcaacaacggcacctgggatcttactagaaatacagagtctcaggcc
accacagacctgcttgtaactctgcagggagtccccaccagcaagaagaccctcaccaga
tgcagccccttgaccctggacttctcagtctccaaaactgactacaaggggctgagcaag
gtaggcatggtcagggtgccaggcatcaagggacagggctatcggatcagccgggcctgt
gctgtgacagccccattttccacccagaagccctcctggaagcaaccctcacccccgggc
cccgttattctaagtccagttgttcacaattcattctacaagccctcatgtaatggaatg
ctaaaatag

>gi568815597r:153443762_153644794|GENSCAN_predicted_peptide_5|85_aa
MALFCVRMVTSAQQYRQCQGCRLHTSDSSILRPLVHNDLGRLKEVWNCCLLENNGRGVKL
QTFAVSVTAHKDSVDPKSEQQQDLL

>gi568815597r:153443762_153644794|GENSCAN_predicted_CDS_5|258_bp
atggctcttttctgtgtacggatggttacatcggcacagcagtaccgacaatgccaaggt
tgcagactccacacctctgacagctccatccttcgaccccttgtgcacaatgacctgggc
aggttgaaggaggtttggaactgctgcttgctggaaaacaatggcagaggagtgaagctg
cagaccttcgcagtgagtgttacagctcataaagacagtgtggacccaaagagtgagcag
cagcaagatttattgtaa

>gi568815597r:153443762_153644794|GENSCAN_predicted_peptide_6|220_aa
MPAAWILWAHSHSELHTVMETPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKEL
CLGEMKESSIDDLMKSLDKNSDQEIDFKEYSVFLTMLCMAYNDFFLEDNKWTLPWEEIKF
PSQLQAQPSAMACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQD
AEIARLMEDLDRNKDQEVNFQEYVTFLGALALIYNEALKG

>gi568815597r:153443762_153644794|GENSCAN_predicted_CDS_6|663_bp
atgcctgctgcttggattctctgggctcactcccacagtgagctgcacactgtgatggag
actcctctggagaaggccctgaccactatggtgaccacgtttcacaaatattcggggaga
gagggtagcaaactgaccctgagtaggaaggaactcaaggagctgatcaagaaagagctg
tgtcttggggagatgaaggagagcagcatcgatgacttgatgaagagcctggacaagaac
agcgaccaggagatcgacttcaaggagtactcggtgttcctgaccatgctgtgcatggcc
tacaacgacttctttctagaggacaacaaatggacccttccatgggaggaaataaagttt
ccatcgcagctccaagcccagccctcagccatggcatgccccctggatcaggccattggc
ctcctcgtggccatcttccacaagtactccggcagggagggtgacaagcacaccctgagc
aagaaggagctgaaggagctgatccagaaggagctcaccattggctcgaagctgcaggat
gctgaaattgcaaggctgatggaagacttggaccggaacaaggaccaggaggtgaacttc
caggagtatgtcaccttcctgggggccttggctttgatctacaatgaagccctcaagggc
tga

>gi568815597r:153443762_153644794|GENSCAN_predicted_peptide_7|101_aa
MACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS
NLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGFPDKQPRKK

>gi568815597r:153443762_153644794|GENSCAN_predicted_CDS_7|306_bp
atggcgtgccctctggagaaggccctggatgtgatggtgtccaccttccacaagtactcg
ggcaaagagggtgacaagttcaagctcaacaagtcagaactaaaggagctgctgacccgg
gagctgcccagcttcttggggaaaaggacagatgaagctgctttccagaagctgatgagc
aacttggacagcaacagggacaacgaggtggacttccaagagtactgtgtcttcctgtcc
tgcatcgccatgatgtgtaacgaattctttgaaggcttcccagataagcagcccaggaag
aaatga

>gi568815597r:153443762_153644794|GENSCAN_predicted_peptide_8|147_aa
MVHFSVVSSTSAVGAGEAALEGLSLQGEDGTGKAWVLGAEGEVEVRMARPLEQAVAAIVC
TFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVE
YVRSLACLCLYCHEYFKDCPSEPPCSQ

>gi568815597r:153443762_153644794|GENSCAN_predicted_CDS_8|444_bp
atggtgcatttctcagtggtcagctccacatctgcagtgggggcgggggaggcggctctg
gaagggctgagtctccaaggagaggacggcacaggcaaggcttgggtgctgggggccgag
ggcgaggtcgaagtgaggatggccaggcctctggagcaggcggtagctgccatcgtgtgc
accttccaggaatacgcagggcgctgtggggacaaatacaagctctgccaggcggagctc
aaggagctgctgcagaaggagctggccacctggaccccgactgagtttcgggaatgtgac
tacaacaaattcatgagtgttctggacaccaacaaggactgcgaggtggactttgtggag
tatgtgcgctcacttgcctgcctctgtctctactgccacgagtacttcaaggactgcccc
tcagagcccccctgctcccagtag

>gi568815597r:153443762_153644794|GENSCAN_predicted_peptide_9|140_aa
MSKTGWAGASTYCSGTAAALALGEEGVPLSHCLGIWAWNLGSMMCSSLEQALAVLVTTFH
KYSCQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAV
FLALITVMCNDFFQGCPDRP

>gi568815597r:153443762_153644794|GENSCAN_predicted_CDS_9|423_bp
atgagtaagaccggctgggctggggcttccacctactgctctgggactgctgctgccctg
gccctgggggaggagggtgtgccgctgagtcactgcctgggcatctgggcctggaacctc
ggatccatgatgtgcagttctctggagcaggcgctggctgtgctggtcactaccttccac
aagtactcctgccaagagggcgacaagttcaagctgagtaagggggaaatgaaggaactt
ctgcacaaggagctgcccagctttgtgggggagaaagtggatgaggaggggctgaagaag
ctgatgggcagcctggatgagaacagtgaccagcaggtggacttccaggagtatgctgtt
ttcctggcactcatcactgtcatgtgcaatgacttcttccagggctgcccagaccgaccc
tga

>gi568815597r:153443762_153644794|GENSCAN_predicted_peptide_10|324_aa
MAAEPLTELEESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKM
KSLDVNQDSELKFNEYWRLIGELAKEIRKKKDLKIRKNGCQQDAQEFSDVERAIETLIKN
FHQYSVEGGKETLTPSELRDLVTQQLPHLMPSNCGLEEKIANLGSCNDSKLEFRSFWELI
GEAAKSVKLERPKKLQKSTCQMVISSTVHFTEGPASRRSREMSDCYTELEKAVIVLVENF
YKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEY
WTLIGGITGPIAKLIHEQEQQSSS

>gi568815597r:153443762_153644794|GENSCAN_predicted_CDS_10|975_bp
atggcagcagaaccactgacagagctagaggagtccattgagaccgtggtcaccaccttc
ttcacctttgcaaggcaggagggccggaaggatagcctcagcgtcaacgagttcaaagag
ctggttacccagcagttgccccatctgctcaaggatgtgggctctcttgatgagaagatg
aagagcttggatgtgaatcaggactcggagctcaagttcaatgagtactggagattgatt
ggggagctggccaaggaaatcaggaagaagaaagacctgaagatcaggaagaacggctgc
caacaggatgctcaggaattcagtgatgtggagagggccattgagaccctcatcaagaac
tttcaccagtactccgtggagggtgggaaggagacgctgaccccttctgagctacgggac
ctggtcacccagcagctgccccatctcatgccgagcaactgtggcctggaagagaaaatt
gccaacctgggcagctgcaatgactctaaactggagttcaggagtttctgggagctgatt
ggagaagcggccaagagtgtgaagctggagaggcctaaaaagctccagaaaagcacttgt
cagatggttatctccagcactgtccattttaccgaaggccccgccagcaggcgaagcagg
gagatgtcagactgctacacggagctggagaaggcagtcattgtcctggtggaaaacttc
tacaaatatgtgtctaagtacagcctggtcaagaacaagatcagcaagagcagcttccgc
gagatgctccagaaagagctgaaccacatgctgtcggacacagggaaccggaaggctgcg
gataagctcatccagaacctggatgccaatcatgatgggcgcatcagcttcgatgagtac
tggaccttgataggcggcatcaccggccccatcgccaaactcatccatgagcaggagcag
cagagcagcagctag

>gi568815597r:153443762_153644794|GENSCAN_predicted_peptide_11|276_aa
MGSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDVDAVDKVMK
ELDENGDGEVDFQEYVVLVAALTVASGQTSTGRGGHFVLDTEQELAAAADERQERAGRVR
PVPGPPAGAVVAAPGGALASVSFDSRDSKMAAQSAPKVVLKSTTKMSLNERFTNMLKNKQ
PTPVNIRASMQQQQQLASARNRRLAQQMENRPSVQAALKLKQKSLKQRLGQNLLRGGRAV
APRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRX

>gi568815597r:153443762_153644794|GENSCAN_predicted_CDS_11|828_bp
atgggctctgagctggagacggcgatggagaccctcatcaacgtgttccacgcccactcg
ggcaaagagggggacaagtacaagctgagcaagaaggagctgaaagagctgctgcagacg
gagctctctggcttcctggatgcccagaaggatgtggatgctgtggacaaggtgatgaag
gagctagacgagaatggagacggggaggtggacttccaggagtatgtggtgcttgtggct
gctctcacagtggcctccggtcagacaagcactggacgtggcggccattttgttttggac
accgagcaggagctggcggccgctgcagacgaaaggcaggaaagggcaggccgggttcgg
ccggtccccggcccgcctgccggagccgtggtggcagccccgggaggagcactggcgtct
gtttccttcgattctcgggattcgaagatggctgcacagtcagcgccgaaagttgtgcta
aaaagcaccaccaagatgtctctaaatgagcgctttactaatatgctgaagaacaaacag
ccgacgccagtgaatattcgggcttcgatgcagcaacaacagcagctagccagtgccaga
aacagaagactggcccagcagatggagaatagaccctctgtccaggcagcattaaaactt
aagcagaagagcttaaagcagcgcctgggtcaaaacctgctccgaggtggacgagccgta
gctccccgaatgggcttaagaagaggtggtgttcgaggtcgtggaggtcctgggagaggg
ggcctagggcgtggagctatgggtcgtggcggaatcggtggtagagnn