Result of FASTA (omim) for pF1KB8862
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8862, 101 aa
  1>>>pF1KB8862 101 - 101 aa - 101 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6141+/-0.000308; mu= 13.4732+/- 0.019
 mean_var=62.6707+/-12.514, 0's: 0 Z-trim(117.0): 47  B-trim: 804 in 1/57
 Lambda= 0.162010
 statistics sampled from 28522 (28573) to 28522 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.335), width:  16
 Scan time:  3.730

The best scores are:                                      opt bits E(85289)
NP_002954 (OMIM: 600353) protein S100-A7 [Homo sap ( 101)  672 164.7 2.3e-41
NP_005611 (OMIM: 603114) protein S100-A11 [Homo sa ( 105)  163 45.7 1.6e-05
NP_002956 (OMIM: 123886) protein S100-A9 [Homo sap ( 114)  151 42.9 0.00012
NP_005612 (OMIM: 603112) protein S100-A12 [Homo sa (  92)  150 42.6 0.00012
XP_011541546 (OMIM: 610103) PREDICTED: protein S10 (  99)  140 40.3 0.00062
XP_016864660 (OMIM: 610103) PREDICTED: protein S10 (  99)  140 40.3 0.00062
XP_016864661 (OMIM: 610103) PREDICTED: protein S10 (  99)  140 40.3 0.00062
XP_011541542 (OMIM: 610103) PREDICTED: protein S10 (  99)  140 40.3 0.00062
NP_570128 (OMIM: 610103) protein S100-Z [Homo sapi (  99)  140 40.3 0.00062
XP_011541547 (OMIM: 610103) PREDICTED: protein S10 (  99)  140 40.3 0.00062
XP_016864662 (OMIM: 610103) PREDICTED: protein S10 (  99)  140 40.3 0.00062
XP_011541543 (OMIM: 610103) PREDICTED: protein S10 (  99)  140 40.3 0.00062
XP_011541541 (OMIM: 610103) PREDICTED: protein S10 (  99)  140 40.3 0.00062
NP_001306130 (OMIM: 123885) protein S100-A8 isofor (  93)  136 39.4  0.0011
NP_002955 (OMIM: 123885) protein S100-A8 isoform d (  93)  136 39.4  0.0011
NP_001306127 (OMIM: 123885) protein S100-A8 isofor ( 101)  136 39.4  0.0012
NP_001306126 (OMIM: 123885) protein S100-A8 isofor ( 116)  136 39.4  0.0013
NP_001306125 (OMIM: 123885) protein S100-A8 isofor ( 117)  136 39.4  0.0013
XP_016857522 (OMIM: 114110) PREDICTED: protein S10 (  90)  134 38.9  0.0015
NP_055439 (OMIM: 114110) protein S100-A6 [Homo sap (  90)  134 38.9  0.0015
NP_006263 (OMIM: 176990) protein S100-B [Homo sapi (  92)  134 38.9  0.0016
XP_016883913 (OMIM: 176990) PREDICTED: protein S10 (  92)  134 38.9  0.0016
XP_016885330 (OMIM: 302020) PREDICTED: protein S10 (  79)  132 38.4  0.0019
NP_004048 (OMIM: 302020) protein S100-G [Homo sapi (  79)  132 38.4  0.0019
NP_005971 (OMIM: 600614) protein S100-P [Homo sapi (  95)  132 38.4  0.0022
NP_002007 (OMIM: 135940,146700,605803) filaggrin [ (4061)  144 42.6  0.0052
NP_002957 (OMIM: 114085) protein S100-A10 [Homo sa (  97)  124 36.6  0.0082


>>NP_002954 (OMIM: 600353) protein S100-A7 [Homo sapiens  (101 aa)
 initn: 672 init1: 672 opt: 672  Z-score: 863.5  bits: 164.7 E(85289): 2.3e-41
Smith-Waterman score: 672; 99.0% identity (100.0% similar) in 101 aa overlap (1-101:1-101)

               10        20        30        40        50        60
pF1KB8 MSNTQAERSIIGMIDMFHKYTRRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFE
       :::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
NP_002 MSNTQAERSIIGMIDMFHKYTRRDDKIEKPSLLTMMKENFPNFLSACDKKGTNYLADVFE
               10        20        30        40        50        60

               70        80        90       100 
pF1KB8 KKDKNEDKKIDFSEFLSLLGDIATDYHKQSHGAAPCSGGSQ
       :::::::::::::::::::::::::::::::::::::::::
NP_002 KKDKNEDKKIDFSEFLSLLGDIATDYHKQSHGAAPCSGGSQ
               70        80        90       100 

>>NP_005611 (OMIM: 603114) protein S100-A11 [Homo sapien  (105 aa)
 initn: 123 init1:  62 opt: 163  Z-score: 220.3  bits: 45.7 E(85289): 1.6e-05
Smith-Waterman score: 163; 33.0% identity (63.9% similar) in 97 aa overlap (2-95:6-100)

                   10        20           30        40        50   
pF1KB8     MSNTQAERSIIGMIDMFHKYTRRDD---KIDKPSLLTMMKENFPNFLSACDKKGTN
            : :..:: : ..: .:.::. .:     ..:  .:..:. ..  : .  ..:  .
NP_005 MAKISSPTETERCIESLIAVFQKYAGKDGYNYTLSKTEFLSFMNTELAAFTK--NQKDPG
               10        20        30        40        50          

            60        70        80        90       100 
pF1KB8 YLADVFEKKDKNEDKKIDFSEFLSLLGDIATDYHKQSHGAAPCSGGSQ
        :  ...: : : : ..::::::.:.: .:   : .   :.:      
NP_005 VLDRMMKKLDTNSDGQLDFSEFLNLIGGLAMACHDSFLKAVPSQKRT 
       60        70        80        90       100      

>>NP_002956 (OMIM: 123886) protein S100-A9 [Homo sapiens  (114 aa)
 initn: 105 init1:  51 opt: 151  Z-score: 204.6  bits: 42.9 E(85289): 0.00012
Smith-Waterman score: 151; 26.4% identity (64.8% similar) in 91 aa overlap (4-91:6-95)

                 10        20           30        40        50     
pF1KB8   MSNTQAERSIIGMIDMFHKYTRR---DDKIDKPSLLTMMKENFPNFLSACDKKGTNYL
            .: ::.:  .:. ::.:. .    : ...  .  ...... :::.  ..:. . .
NP_002 MTCKMSQLERNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKK-ENKNEKVI
               10        20        30        40        50          

          60        70        80        90       100          
pF1KB8 ADVFEKKDKNEDKKIDFSEFLSLLGDIATDYHKQSHGAAPCSGGSQ         
         ..:  : : ::...: ::. :.. ..   :.. :                   
NP_002 EHIMEDLDTNADKQLSFEEFIMLMARLTWASHEKMHEGDEGPGHHHKPGLGEGTP
      60        70        80        90       100       110    

>>NP_005612 (OMIM: 603112) protein S100-A12 [Homo sapien  (92 aa)
 initn:  77 init1:  43 opt: 150  Z-score: 204.6  bits: 42.6 E(85289): 0.00012
Smith-Waterman score: 150; 26.4% identity (62.6% similar) in 91 aa overlap (4-91:2-90)

               10        20           30        40        50       
pF1KB8 MSNTQAERSIIGMIDMFHKYTRRD---DKIDKPSLLTMMKENFPNFLSACDKKGTNYLAD
          :. :. . :....::.:. :    : ..:  :  .. ... : ..  . :    . .
NP_005   MTKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIK--NIKDKAVIDE
                 10        20        30        40          50      

        60        70        80        90       100 
pF1KB8 VFEKKDKNEDKKIDFSEFLSLLGDIATDYHKQSHGAAPCSGGSQ
       .:.  : :.:...::.::.::..      : ..:          
NP_005 IFQGLDANQDEQVDFQEFISLVAIALKAAHYHTHKE        
         60        70        80        90          

>>XP_011541546 (OMIM: 610103) PREDICTED: protein S100-Z   (99 aa)
 initn: 104 init1:  60 opt: 140  Z-score: 191.6  bits: 40.3 E(85289): 0.00062
Smith-Waterman score: 140; 31.6% identity (68.4% similar) in 79 aa overlap (4-79:3-79)

               10        20           30        40        50       
pF1KB8 MSNTQAERSIIGMIDMFHKYT---RRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLAD
          :: : ..  :: .::.:.   :.  :..:  :  ...... .::: :.:. :. .  
XP_011  MPTQLEMAMDTMIRIFHRYSGKERKRFKLSKGELKLLLQRELTEFLS-CQKE-TQLVDK
                10        20        30        40         50        

        60        70        80        90       100 
pF1KB8 VFEKKDKNEDKKIDFSEFLSLLGDIATDYHKQSHGAAPCSGGSQ
       . .  : :.:...::.::. ..                      
XP_011 IVQDLDANKDNEVDFNEFVVMVAALTVACNDYFVEQLKKKGK  
        60        70        80        90           

>>XP_016864660 (OMIM: 610103) PREDICTED: protein S100-Z   (99 aa)
 initn: 104 init1:  60 opt: 140  Z-score: 191.6  bits: 40.3 E(85289): 0.00062
Smith-Waterman score: 140; 31.6% identity (68.4% similar) in 79 aa overlap (4-79:3-79)

               10        20           30        40        50       
pF1KB8 MSNTQAERSIIGMIDMFHKYT---RRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLAD
          :: : ..  :: .::.:.   :.  :..:  :  ...... .::: :.:. :. .  
XP_016  MPTQLEMAMDTMIRIFHRYSGKERKRFKLSKGELKLLLQRELTEFLS-CQKE-TQLVDK
                10        20        30        40         50        

        60        70        80        90       100 
pF1KB8 VFEKKDKNEDKKIDFSEFLSLLGDIATDYHKQSHGAAPCSGGSQ
       . .  : :.:...::.::. ..                      
XP_016 IVQDLDANKDNEVDFNEFVVMVAALTVACNDYFVEQLKKKGK  
        60        70        80        90           

>>XP_016864661 (OMIM: 610103) PREDICTED: protein S100-Z   (99 aa)
 initn: 104 init1:  60 opt: 140  Z-score: 191.6  bits: 40.3 E(85289): 0.00062
Smith-Waterman score: 140; 31.6% identity (68.4% similar) in 79 aa overlap (4-79:3-79)

               10        20           30        40        50       
pF1KB8 MSNTQAERSIIGMIDMFHKYT---RRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLAD
          :: : ..  :: .::.:.   :.  :..:  :  ...... .::: :.:. :. .  
XP_016  MPTQLEMAMDTMIRIFHRYSGKERKRFKLSKGELKLLLQRELTEFLS-CQKE-TQLVDK
                10        20        30        40         50        

        60        70        80        90       100 
pF1KB8 VFEKKDKNEDKKIDFSEFLSLLGDIATDYHKQSHGAAPCSGGSQ
       . .  : :.:...::.::. ..                      
XP_016 IVQDLDANKDNEVDFNEFVVMVAALTVACNDYFVEQLKKKGK  
        60        70        80        90           

>>XP_011541542 (OMIM: 610103) PREDICTED: protein S100-Z   (99 aa)
 initn: 104 init1:  60 opt: 140  Z-score: 191.6  bits: 40.3 E(85289): 0.00062
Smith-Waterman score: 140; 31.6% identity (68.4% similar) in 79 aa overlap (4-79:3-79)

               10        20           30        40        50       
pF1KB8 MSNTQAERSIIGMIDMFHKYT---RRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLAD
          :: : ..  :: .::.:.   :.  :..:  :  ...... .::: :.:. :. .  
XP_011  MPTQLEMAMDTMIRIFHRYSGKERKRFKLSKGELKLLLQRELTEFLS-CQKE-TQLVDK
                10        20        30        40         50        

        60        70        80        90       100 
pF1KB8 VFEKKDKNEDKKIDFSEFLSLLGDIATDYHKQSHGAAPCSGGSQ
       . .  : :.:...::.::. ..                      
XP_011 IVQDLDANKDNEVDFNEFVVMVAALTVACNDYFVEQLKKKGK  
        60        70        80        90           

>>NP_570128 (OMIM: 610103) protein S100-Z [Homo sapiens]  (99 aa)
 initn: 104 init1:  60 opt: 140  Z-score: 191.6  bits: 40.3 E(85289): 0.00062
Smith-Waterman score: 140; 31.6% identity (68.4% similar) in 79 aa overlap (4-79:3-79)

               10        20           30        40        50       
pF1KB8 MSNTQAERSIIGMIDMFHKYT---RRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLAD
          :: : ..  :: .::.:.   :.  :..:  :  ...... .::: :.:. :. .  
NP_570  MPTQLEMAMDTMIRIFHRYSGKERKRFKLSKGELKLLLQRELTEFLS-CQKE-TQLVDK
                10        20        30        40         50        

        60        70        80        90       100 
pF1KB8 VFEKKDKNEDKKIDFSEFLSLLGDIATDYHKQSHGAAPCSGGSQ
       . .  : :.:...::.::. ..                      
NP_570 IVQDLDANKDNEVDFNEFVVMVAALTVACNDYFVEQLKKKGK  
        60        70        80        90           

>>XP_011541547 (OMIM: 610103) PREDICTED: protein S100-Z   (99 aa)
 initn: 104 init1:  60 opt: 140  Z-score: 191.6  bits: 40.3 E(85289): 0.00062
Smith-Waterman score: 140; 31.6% identity (68.4% similar) in 79 aa overlap (4-79:3-79)

               10        20           30        40        50       
pF1KB8 MSNTQAERSIIGMIDMFHKYT---RRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLAD
          :: : ..  :: .::.:.   :.  :..:  :  ...... .::: :.:. :. .  
XP_011  MPTQLEMAMDTMIRIFHRYSGKERKRFKLSKGELKLLLQRELTEFLS-CQKE-TQLVDK
                10        20        30        40         50        

        60        70        80        90       100 
pF1KB8 VFEKKDKNEDKKIDFSEFLSLLGDIATDYHKQSHGAAPCSGGSQ
       . .  : :.:...::.::. ..                      
XP_011 IVQDLDANKDNEVDFNEFVVMVAALTVACNDYFVEQLKKKGK  
        60        70        80        90           




101 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:12:18 2016 done: Fri Nov  4 16:12:19 2016
 Total Scan time:  3.730 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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