Result of FASTA (omim) for pF1KB8819
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8819, 382 aa
  1>>>pF1KB8819 382 - 382 aa - 382 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7630+/-0.000505; mu= 21.9172+/- 0.032
 mean_var=219.0481+/-54.446, 0's: 0 Z-trim(112.6): 313  B-trim: 1245 in 1/51
 Lambda= 0.086657
 statistics sampled from 21218 (21655) to 21218 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.254), width:  16
 Scan time:  8.260

The best scores are:                                      opt bits E(85289)
NP_543022 (OMIM: 300407) polyadenylate-binding pro ( 382) 2565 334.4 2.8e-91
NP_001129126 (OMIM: 603407) polyadenylate-binding  ( 631) 1623 217.0 9.6e-56
NP_003810 (OMIM: 603407) polyadenylate-binding pro ( 644) 1623 217.0 9.7e-56
NP_001129125 (OMIM: 603407) polyadenylate-binding  ( 660) 1623 217.1 9.8e-56
XP_005250918 (OMIM: 604679) PREDICTED: polyadenyla ( 636) 1606 214.9 4.2e-55
NP_002559 (OMIM: 604679) polyadenylate-binding pro ( 636) 1606 214.9 4.2e-55
NP_112241 (OMIM: 604680) polyadenylate-binding pro ( 631) 1509 202.8 1.9e-51
NP_005841 (OMIM: 154400,605593) splicing factor 3B ( 424)  375 60.7 7.6e-09
NP_001311138 (OMIM: 168360) ELAV-like protein 4 is ( 352)  271 47.5 5.8e-05
NP_001311144 (OMIM: 168360) ELAV-like protein 4 is ( 358)  271 47.5 5.8e-05
XP_016856028 (OMIM: 168360) PREDICTED: ELAV-like p ( 359)  271 47.5 5.8e-05
NP_001311143 (OMIM: 168360) ELAV-like protein 4 is ( 365)  271 47.5 5.9e-05
NP_001311141 (OMIM: 168360) ELAV-like protein 4 is ( 365)  271 47.5 5.9e-05
NP_001138246 (OMIM: 168360) ELAV-like protein 4 is ( 366)  271 47.5 5.9e-05
NP_001138248 (OMIM: 168360) ELAV-like protein 4 is ( 366)  271 47.5 5.9e-05
NP_001138249 (OMIM: 168360) ELAV-like protein 4 is ( 369)  271 47.5 5.9e-05
NP_001281277 (OMIM: 168360) ELAV-like protein 4 is ( 371)  271 47.5 5.9e-05
XP_011539196 (OMIM: 168360) PREDICTED: ELAV-like p ( 379)  271 47.6   6e-05
XP_011539197 (OMIM: 168360) PREDICTED: ELAV-like p ( 379)  271 47.6   6e-05
XP_016856027 (OMIM: 168360) PREDICTED: ELAV-like p ( 379)  271 47.6   6e-05
NP_068771 (OMIM: 168360) ELAV-like protein 4 isofo ( 380)  271 47.6   6e-05
XP_011539195 (OMIM: 168360) PREDICTED: ELAV-like p ( 380)  271 47.6   6e-05
NP_001311137 (OMIM: 168360) ELAV-like protein 4 is ( 383)  271 47.6   6e-05
NP_001311142 (OMIM: 168360) ELAV-like protein 4 is ( 385)  271 47.6   6e-05
XP_011539192 (OMIM: 168360) PREDICTED: ELAV-like p ( 389)  271 47.6   6e-05
XP_006710474 (OMIM: 168360) PREDICTED: ELAV-like p ( 393)  271 47.6   6e-05
NP_001138247 (OMIM: 168360) ELAV-like protein 4 is ( 402)  271 47.6 6.1e-05
NP_001410 (OMIM: 603466) ELAV-like protein 1 [Homo ( 326)  270 47.3 6.1e-05
XP_011539191 (OMIM: 168360) PREDICTED: ELAV-like p ( 416)  271 47.6 6.2e-05
NP_001164666 (OMIM: 601673) ELAV-like protein 2 is ( 346)  269 47.2 6.8e-05
XP_016869913 (OMIM: 601673) PREDICTED: ELAV-like p ( 346)  269 47.2 6.8e-05
XP_016869914 (OMIM: 601673) PREDICTED: ELAV-like p ( 346)  269 47.2 6.8e-05
NP_001164668 (OMIM: 601673) ELAV-like protein 2 is ( 346)  269 47.2 6.8e-05
XP_016869911 (OMIM: 601673) PREDICTED: ELAV-like p ( 359)  269 47.3 6.9e-05
XP_016869912 (OMIM: 601673) PREDICTED: ELAV-like p ( 359)  269 47.3 6.9e-05
XP_016869908 (OMIM: 601673) PREDICTED: ELAV-like p ( 359)  269 47.3 6.9e-05
XP_016869910 (OMIM: 601673) PREDICTED: ELAV-like p ( 359)  269 47.3 6.9e-05
NP_004423 (OMIM: 601673) ELAV-like protein 2 isofo ( 359)  269 47.3 6.9e-05
XP_016869909 (OMIM: 601673) PREDICTED: ELAV-like p ( 359)  269 47.3 6.9e-05
XP_016869907 (OMIM: 601673) PREDICTED: ELAV-like p ( 360)  269 47.3 6.9e-05
NP_115657 (OMIM: 603458) ELAV-like protein 3 isofo ( 360)  269 47.3 6.9e-05
XP_005251452 (OMIM: 601673) PREDICTED: ELAV-like p ( 360)  269 47.3 6.9e-05
XP_005251451 (OMIM: 601673) PREDICTED: ELAV-like p ( 360)  269 47.3 6.9e-05
XP_006716799 (OMIM: 601673) PREDICTED: ELAV-like p ( 360)  269 47.3 6.9e-05
XP_011516086 (OMIM: 601673) PREDICTED: ELAV-like p ( 360)  269 47.3 6.9e-05
XP_011516087 (OMIM: 601673) PREDICTED: ELAV-like p ( 360)  269 47.3 6.9e-05
XP_011516088 (OMIM: 601673) PREDICTED: ELAV-like p ( 360)  269 47.3 6.9e-05
XP_005251450 (OMIM: 601673) PREDICTED: ELAV-like p ( 360)  269 47.3 6.9e-05
XP_011526080 (OMIM: 603458) PREDICTED: ELAV-like p ( 366)  269 47.3   7e-05
NP_001411 (OMIM: 603458) ELAV-like protein 3 isofo ( 367)  269 47.3   7e-05


>>NP_543022 (OMIM: 300407) polyadenylate-binding protein  (382 aa)
 initn: 2565 init1: 2565 opt: 2565  Z-score: 1759.8  bits: 334.4 E(85289): 2.8e-91
Smith-Waterman score: 2565; 100.0% identity (100.0% similar) in 382 aa overlap (1-382:1-382)

               10        20        30        40        50        60
pF1KB8 MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_543 MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_543 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_543 ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 KFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_543 KFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_543 FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_543 GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDE
              310       320       330       340       350       360

              370       380  
pF1KB8 MNGRIVGSKPLHVTLGQARRRC
       ::::::::::::::::::::::
NP_543 MNGRIVGSKPLHVTLGQARRRC
              370       380  

>>NP_001129126 (OMIM: 603407) polyadenylate-binding prot  (631 aa)
 initn: 1809 init1: 825 opt: 1623  Z-score: 1121.7  bits: 217.0 E(85289): 9.6e-56
Smith-Waterman score: 1623; 66.6% identity (85.8% similar) in 365 aa overlap (15-379:8-371)

               10        20        30        40        50        60
pF1KB8 MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG
                     :  :.::::::  :::: :::.:: ::::.   :.::: .::  ::
NP_001        MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLG
                      10        20        30        40        50   

               70        80        90       100       110       120
pF1KB8 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR
       :.::::. ::::: ::.:::::.:.:::.:.:::: :  ::::::::.:::::::::::.
NP_001 YAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNK
            60        70        80        90       100       110   

              130       140       150       160       170       180
pF1KB8 ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
       ::.  :::::::::::::::.:::::::.:::..  ::..:: .:::. ::.:.:.::::
NP_001 ALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF
           120       130       140       150       160       170   

              190       200       210       220       230       240
pF1KB8 KFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG
       :  .:: ::. .. .  ::::..::.:...:::.::::: ..: : ::::.:: .:::::
NP_001 KSRKEREAELGAKAKE-FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKG
           180        190       200       210       220       230  

              250       260       270       280       290       300
pF1KB8 FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP
       :::: :: :: :.::: ...:: :.::...:::::::.:: :::.:.::.:. .. ::  
NP_001 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ
            240       250       260       270       280       290  

              310       320       330       340       350       360
pF1KB8 GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDE
       :: .::::::.::.::::..::: ::::. ::::.: :..:::: ::::: ::::::: :
NP_001 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTE
            300       310       320       330       340       350  

              370       380                                        
pF1KB8 MNGRIVGSKPLHVTLGQARRRC                                      
       :::::::::::.:.:.: .                                         
NP_001 MNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPA
            360       370       380       390       400       410  

>>NP_003810 (OMIM: 603407) polyadenylate-binding protein  (644 aa)
 initn: 1809 init1: 825 opt: 1623  Z-score: 1121.7  bits: 217.0 E(85289): 9.7e-56
Smith-Waterman score: 1623; 66.6% identity (85.8% similar) in 365 aa overlap (15-379:8-371)

               10        20        30        40        50        60
pF1KB8 MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG
                     :  :.::::::  :::: :::.:: ::::.   :.::: .::  ::
NP_003        MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLG
                      10        20        30        40        50   

               70        80        90       100       110       120
pF1KB8 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR
       :.::::. ::::: ::.:::::.:.:::.:.:::: :  ::::::::.:::::::::::.
NP_003 YAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNK
            60        70        80        90       100       110   

              130       140       150       160       170       180
pF1KB8 ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
       ::.  :::::::::::::::.:::::::.:::..  ::..:: .:::. ::.:.:.::::
NP_003 ALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF
           120       130       140       150       160       170   

              190       200       210       220       230       240
pF1KB8 KFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG
       :  .:: ::. .. .  ::::..::.:...:::.::::: ..: : ::::.:: .:::::
NP_003 KSRKEREAELGAKAKE-FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKG
           180        190       200       210       220       230  

              250       260       270       280       290       300
pF1KB8 FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP
       :::: :: :: :.::: ...:: :.::...:::::::.:: :::.:.::.:. .. ::  
NP_003 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ
            240       250       260       270       280       290  

              310       320       330       340       350       360
pF1KB8 GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDE
       :: .::::::.::.::::..::: ::::. ::::.: :..:::: ::::: ::::::: :
NP_003 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTE
            300       310       320       330       340       350  

              370       380                                        
pF1KB8 MNGRIVGSKPLHVTLGQARRRC                                      
       :::::::::::.:.:.: .                                         
NP_003 MNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPA
            360       370       380       390       400       410  

>>NP_001129125 (OMIM: 603407) polyadenylate-binding prot  (660 aa)
 initn: 1809 init1: 825 opt: 1623  Z-score: 1121.6  bits: 217.1 E(85289): 9.8e-56
Smith-Waterman score: 1623; 66.6% identity (85.8% similar) in 365 aa overlap (15-379:8-371)

               10        20        30        40        50        60
pF1KB8 MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG
                     :  :.::::::  :::: :::.:: ::::.   :.::: .::  ::
NP_001        MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLG
                      10        20        30        40        50   

               70        80        90       100       110       120
pF1KB8 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR
       :.::::. ::::: ::.:::::.:.:::.:.:::: :  ::::::::.:::::::::::.
NP_001 YAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNK
            60        70        80        90       100       110   

              130       140       150       160       170       180
pF1KB8 ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
       ::.  :::::::::::::::.:::::::.:::..  ::..:: .:::. ::.:.:.::::
NP_001 ALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF
           120       130       140       150       160       170   

              190       200       210       220       230       240
pF1KB8 KFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG
       :  .:: ::. .. .  ::::..::.:...:::.::::: ..: : ::::.:: .:::::
NP_001 KSRKEREAELGAKAKE-FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKG
           180        190       200       210       220       230  

              250       260       270       280       290       300
pF1KB8 FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP
       :::: :: :: :.::: ...:: :.::...:::::::.:: :::.:.::.:. .. ::  
NP_001 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ
            240       250       260       270       280       290  

              310       320       330       340       350       360
pF1KB8 GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDE
       :: .::::::.::.::::..::: ::::. ::::.: :..:::: ::::: ::::::: :
NP_001 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTE
            300       310       320       330       340       350  

              370       380                                        
pF1KB8 MNGRIVGSKPLHVTLGQARRRC                                      
       :::::::::::.:.:.: .                                         
NP_001 MNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPA
            360       370       380       390       400       410  

>>XP_005250918 (OMIM: 604679) PREDICTED: polyadenylate-b  (636 aa)
 initn: 1791 init1: 838 opt: 1606  Z-score: 1110.2  bits: 214.9 E(85289): 4.2e-55
Smith-Waterman score: 1606; 64.3% identity (84.5% similar) in 373 aa overlap (7-379:2-371)

               10        20        30        40        50        60
pF1KB8 MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG
             ::.. .  :  :.:::::: ::::: :::.:: ::::.   :.::: .::  ::
XP_005      MNPSAPS--YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLG
                      10        20        30        40        50   

               70        80        90       100       110       120
pF1KB8 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR
       :.::::. ::::: ::.:::::.:.::: :.:::: :  ::::::::::::::::::::.
XP_005 YAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNK
            60        70        80        90       100       110   

              130       140       150       160       170       180
pF1KB8 ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
       ::.  :::::::::::::::.::::::..:::..  ::.::: .:::. ::.:.:.::::
XP_005 ALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF
           120       130       140       150       160       170   

              190       200       210       220       230       240
pF1KB8 KFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG
       :  .:: ::. .: .  ::::..::.:.:.:::.::.:: ..::. ::::. : ::::::
XP_005 KSRKEREAELGARAKE-FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG
           180        190       200       210       220       230  

              250       260       270       280       290       300
pF1KB8 FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP
       :::: .: :: ::::: ...:: ..:: .::::::::.:: .::.:.::...  . .:  
XP_005 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ
            240       250       260       270       280       290  

              310       320       330       340       350       360
pF1KB8 GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDE
       :: .:.::::. :.::.:..::: ::.:. :::::: :..:::: ::::: ::::::: :
XP_005 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTE
            300       310       320       330       340       350  

              370       380                                        
pF1KB8 MNGRIVGSKPLHVTLGQARRRC                                      
       ::::::..:::.:.:.: .                                         
XP_005 MNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAA
            360       370       380       390       400       410  

>>NP_002559 (OMIM: 604679) polyadenylate-binding protein  (636 aa)
 initn: 1791 init1: 838 opt: 1606  Z-score: 1110.2  bits: 214.9 E(85289): 4.2e-55
Smith-Waterman score: 1606; 64.3% identity (84.5% similar) in 373 aa overlap (7-379:2-371)

               10        20        30        40        50        60
pF1KB8 MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG
             ::.. .  :  :.:::::: ::::: :::.:: ::::.   :.::: .::  ::
NP_002      MNPSAPS--YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLG
                      10        20        30        40        50   

               70        80        90       100       110       120
pF1KB8 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR
       :.::::. ::::: ::.:::::.:.::: :.:::: :  ::::::::::::::::::::.
NP_002 YAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNK
            60        70        80        90       100       110   

              130       140       150       160       170       180
pF1KB8 ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
       ::.  :::::::::::::::.::::::..:::..  ::.::: .:::. ::.:.:.::::
NP_002 ALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF
           120       130       140       150       160       170   

              190       200       210       220       230       240
pF1KB8 KFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG
       :  .:: ::. .: .  ::::..::.:.:.:::.::.:: ..::. ::::. : ::::::
NP_002 KSRKEREAELGARAKE-FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG
           180        190       200       210       220       230  

              250       260       270       280       290       300
pF1KB8 FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP
       :::: .: :: ::::: ...:: ..:: .::::::::.:: .::.:.::...  . .:  
NP_002 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ
            240       250       260       270       280       290  

              310       320       330       340       350       360
pF1KB8 GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDE
       :: .:.::::. :.::.:..::: ::.:. :::::: :..:::: ::::: ::::::: :
NP_002 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTE
            300       310       320       330       340       350  

              370       380                                        
pF1KB8 MNGRIVGSKPLHVTLGQARRRC                                      
       ::::::..:::.:.:.: .                                         
NP_002 MNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAA
            360       370       380       390       400       410  

>>NP_112241 (OMIM: 604680) polyadenylate-binding protein  (631 aa)
 initn: 1681 init1: 764 opt: 1509  Z-score: 1044.7  bits: 202.8 E(85289): 1.9e-51
Smith-Waterman score: 1509; 61.1% identity (82.0% similar) in 373 aa overlap (7-379:2-371)

               10        20        30        40        50        60
pF1KB8 MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG
             ::.    .:  :.:::::: ::::: :::.:: ::::.   ::::: .: .  .
NP_112      MNPS--TPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSN
                      10        20        30        40        50   

               70        80        90       100       110       120
pF1KB8 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR
       :.::::.   ::: ::.:::::.:.::: :.:::: :  ::::::::::.:::::::.:.
NP_112 YAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNK
            60        70        80        90       100       110   

              130       140       150       160       170       180
pF1KB8 ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
       ::.   :::::::::.::::.::::::..:::..  ::.::: .:::. ::.:.:.::.:
NP_112 ALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQF
           120       130       140       150       160       170   

              190       200       210       220       230       240
pF1KB8 KFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG
       :  .:: ::. .: .  : ::..::.:.:.:::.::.:: ..::. ::::. : ::::::
NP_112 KSRKEREAELGARAKE-FPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG
           180        190       200       210       220       230  

              250       260       270       280       290       300
pF1KB8 FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP
       :::: .: :: ::::: ...:: ..:: .::::::::.:: .::.: ::...  . .:  
NP_112 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQ
            240       250       260       270       280       290  

              310       320       330       340       350       360
pF1KB8 GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDE
        : .:.::::. :.::.:.. :: ::.:. :::::: :..:::: ::::: ::::::: :
NP_112 VVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTE
            300       310       320       330       340       350  

              370       380                                        
pF1KB8 MNGRIVGSKPLHVTLGQARRRC                                      
       ::::::..:::.:.:.: .                                         
NP_112 MNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQN
            360       370       380       390       400       410  

>>NP_005841 (OMIM: 154400,605593) splicing factor 3B sub  (424 aa)
 initn: 441 init1: 187 opt: 375  Z-score: 279.8  bits: 60.7 E(85289): 7.6e-09
Smith-Waterman score: 375; 41.1% identity (66.9% similar) in 175 aa overlap (18-189:13-185)

               10        20        30        40        50        60
pF1KB8 MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG
                        :..::: ::  :.: .:.. :  :::.  :.. .: :: .  :
NP_005      MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQG
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KB8 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR
       ::.:.:    ::..:.. ::.  . :::.:.  ..  ..    :. :::: :::  ::..
NP_005 YGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEK
          60        70        80        90       100        110    

              130        140         150       160       170       
pF1KB8 ALFYLFSAFGNILSC-KVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV
        :.  ::::: ::.  :.. : :.: :::::...: :. :.. ::  :::  : :: . :
NP_005 LLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITV
          120       130       140       150       160       170    

       180       190       200       210       220       230       
pF1KB8 GRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK
       . . : ..  .:                                                
NP_005 S-YAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLP
           180       190       200       210       220       230   

>>NP_001311138 (OMIM: 168360) ELAV-like protein 4 isofor  (352 aa)
 initn: 321 init1: 132 opt: 271  Z-score: 210.1  bits: 47.5 E(85289): 5.8e-05
Smith-Waterman score: 356; 27.3% identity (55.6% similar) in 322 aa overlap (6-280:33-351)

                                        10        20        30     
pF1KB8                          MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLY
                                     :  .:      :. : :. :  ..:.. . 
NP_001 IISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFR
             10        20        30        40        50        60  

          40        50        60        70        80        90     
pF1KB8 KKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQ
       . :   : ..  .. :: .: . ::::.::.  : ::: :.::.:   .. : ... ...
NP_001 SLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR
             70        80        90       100       110       120  

         100       110       120       130       140         150   
pF1KB8 PDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD-NG-SKGYAYVHFD
       :..   ...  :.....: :.. .. :  ::: .: :.. ... :. .: :.: ....::
NP_001 PSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD
            130         140       150       160       170       180

           160                  170                     180        
pF1KB8 SLAAANRAIWHMNG-----------VRLNNR-----------QVYVG---RFKFPEERAA
       .   :..::  .::           :.. :            :.: .   :.  : .. :
NP_001 KRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQA
              190       200       210       220       230       240

      190                          200       210       220         
pF1KB8 EVRTR-------------------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVK
       . : :                     .:   .:: :.. : :.  : .::  .: ...::
NP_001 Q-RFRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVK
               250       260       270       280       290         

     230        240       250       260       270       280        
pF1KB8 VIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF
       ::::  ..: :::::: . ... :  :. .:.:  .  .:: :.   .: ..        
NP_001 VIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS       
     300       310       320       330       340       350         

      290       300       310       320       330       340        
pF1KB8 ERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCF

>>NP_001311144 (OMIM: 168360) ELAV-like protein 4 isofor  (358 aa)
 initn: 321 init1: 132 opt: 271  Z-score: 210.1  bits: 47.5 E(85289): 5.8e-05
Smith-Waterman score: 356; 27.3% identity (55.6% similar) in 322 aa overlap (6-280:39-357)

                                        10        20        30     
pF1KB8                          MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLY
                                     :  .:      :. : :. :  ..:.. . 
NP_001 IISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFR
       10        20        30        40        50        60        

          40        50        60        70        80        90     
pF1KB8 KKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQ
       . :   : ..  .. :: .: . ::::.::.  : ::: :.::.:   .. : ... ...
NP_001 SLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR
       70        80        90       100       110       120        

         100       110       120       130       140         150   
pF1KB8 PDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD-NG-SKGYAYVHFD
       :..   ...  :.....: :.. .. :  ::: .: :.. ... :. .: :.: ....::
NP_001 PSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD
      130         140       150       160       170       180      

           160                  170                     180        
pF1KB8 SLAAANRAIWHMNG-----------VRLNNR-----------QVYVG---RFKFPEERAA
       .   :..::  .::           :.. :            :.: .   :.  : .. :
NP_001 KRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQA
        190       200       210       220       230       240      

      190                          200       210       220         
pF1KB8 EVRTR-------------------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVK
       . : :                     .:   .:: :.. : :.  : .::  .: ...::
NP_001 Q-RFRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVK
         250       260       270       280       290       300     

     230        240       250       260       270       280        
pF1KB8 VIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF
       ::::  ..: :::::: . ... :  :. .:.:  .  .:: :.   .: ..        
NP_001 VIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS       
         310       320       330       340       350               

      290       300       310       320       330       340        
pF1KB8 ERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCF




382 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:51:03 2016 done: Fri Nov  4 15:51:04 2016
 Total Scan time:  8.260 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
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