FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8797, 333 aa 1>>>pF1KB8797 333 - 333 aa - 333 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6061+/-0.000841; mu= 13.9052+/- 0.051 mean_var=63.0041+/-13.689, 0's: 0 Z-trim(106.1): 90 B-trim: 1046 in 2/46 Lambda= 0.161581 statistics sampled from 8716 (8816) to 8716 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.271), width: 16 Scan time: 2.710 The best scores are: opt bits E(32554) CCDS5321.1 GPR146 gene_id:115330|Hs108|chr7 ( 333) 2221 526.4 1.3e-149 CCDS5322.1 GPER1 gene_id:2852|Hs108|chr7 ( 375) 350 90.2 2.8e-18 CCDS2408.1 CXCR2 gene_id:3579|Hs108|chr2 ( 360) 248 66.5 3.8e-11 CCDS2409.1 CXCR1 gene_id:3577|Hs108|chr2 ( 350) 244 65.5 7.1e-11 >>CCDS5321.1 GPR146 gene_id:115330|Hs108|chr7 (333 aa) initn: 2221 init1: 2221 opt: 2221 Z-score: 2799.8 bits: 526.4 E(32554): 1.3e-149 Smith-Waterman score: 2221; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333) 10 20 30 40 50 60 pF1KB8 MWSCSWFNGTGLVEELPACQDLQLGLSLLSLLGLVVGVPVGLCYNALLVLANLHSKASMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MWSCSWFNGTGLVEELPACQDLQLGLSLLSLLGLVVGVPVGLCYNALLVLANLHSKASMT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 MPDVYFVNMAVAGLVLSALAPVHLLGPPSSRWALWSVGGEVHVALQIPFNVSSLVAMYST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MPDVYFVNMAVAGLVLSALAPVHLLGPPSSRWALWSVGGEVHVALQIPFNVSSLVAMYST 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 ALLSLDHYIERALPRTYMASVYNTRHVCGFVWGGALLTSFSSLLFYICSHVSTRALECAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 ALLSLDHYIERALPRTYMASVYNTRHVCGFVWGGALLTSFSSLLFYICSHVSTRALECAK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 MQNAEAADATLVFIGYVVPALATLYALVLLSRVRREDTPLDRDTGRLEPSAHRLLVATVC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MQNAEAADATLVFIGYVVPALATLYALVLLSRVRREDTPLDRDTGRLEPSAHRLLVATVC 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 TQFGLWTPHYLILLGHTVIISRGKPVDAHYLGLLHFVKDFSKLLAFSSSFVTPLLYRYMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 TQFGLWTPHYLILLGHTVIISRGKPVDAHYLGLLHFVKDFSKLLAFSSSFVTPLLYRYMN 250 260 270 280 290 300 310 320 330 pF1KB8 QSFPSKLQRLMKKLPCGDRHCSPDHMGVQQVLA ::::::::::::::::::::::::::::::::: CCDS53 QSFPSKLQRLMKKLPCGDRHCSPDHMGVQQVLA 310 320 330 >>CCDS5322.1 GPER1 gene_id:2852|Hs108|chr7 (375 aa) initn: 248 init1: 135 opt: 350 Z-score: 441.8 bits: 90.2 E(32554): 2.8e-18 Smith-Waterman score: 354; 27.3% identity (58.4% similar) in 341 aa overlap (8-332:44-360) 10 20 30 pF1KB8 MWSCSWFNGTGLVEELPACQDLQLGLSLLSLLGLVVG :::: :: :. .:: .:: : . CCDS53 MYPGTAQPAAPNTTSPELNLSHPLLGTALANGTG---ELSEHQQYVIGL-FLSCLYTIFL 20 30 40 50 60 40 50 60 70 80 90 pF1KB8 VPVGLCYNALLVLANLHSKASMTMPDVYFVNMAVAGLVLSALAPVHLLGPPSSRWALWSV :.:. : :....:. . .::.::.::.:.::: :.: : . ..... . . . CCDS53 FPIGFVGNILILVVNISFREKMTIPDLYFINLAVADLILVADSLIEVFNLHERYYDIAVL 70 80 90 100 110 120 100 110 120 130 140 150 pF1KB8 GGEVHVALQIPFNVSSLVAMYSTALLSLDHYIERALPRTYMASVYNTRH----VCGFVWG . . ::. :. : : . . .:.:.:: :: :.. :.. :.: ::..: CCDS53 CTFMSLFLQV--NMYSSV--FFLTWMSFDRYI--ALARAMRCSLFRTKHHARLSCGLIW- 130 140 150 160 170 180 160 170 180 190 200 210 pF1KB8 GALLTSFSSLLFYICSHVSTRALECAKMQNAEAADATLVFIGYVVP-ALATL-YALVLLS . . ..:. . :.. : . ... .. : .:..:: :. : :.:.. CCDS53 --MASVSATLVPFTAVHLQHTDEACFCFADVREVQWLEVTLGFIVPFAIIGLCYSLIVRV 190 200 210 220 230 240 220 230 240 250 260 pF1KB8 RVRREDTPLDRDTGRLEP---SAHRLLVATVCTQFGLWTPHYLILLGHTVIISRGKPVDA :: . : : :.: .: :...:.: . : : :. ... : ...: .: : CCDS53 LVRAH-----RHRG-LRPRRQKALRMILAVVLVFFVCWLPENVFISVH--LLQRTQPGAA 250 260 270 280 290 270 280 290 300 310 320 pF1KB8 HYLGLLHFVKDFS----KLLAFSSSFVTPLLYRYMNQSFPSKLQRLMKK---LPCGDRHC .. .. .. .: :::.: ..::.: .....: .::. ... :: .: : CCDS53 PCKQSFRHAHPLTGHIVNLAAFSNSCLNPLIYSFLGETFRDKLRLYIEQKTNLPALNRFC 300 310 320 330 340 350 330 pF1KB8 SPDHMGVQQVLA : ... :. CCDS53 ---HAALKAVIPDSTEQSDVRFSSAV 360 370 >>CCDS2408.1 CXCR2 gene_id:3579|Hs108|chr2 (360 aa) initn: 92 init1: 72 opt: 248 Z-score: 313.5 bits: 66.5 E(32554): 3.8e-11 Smith-Waterman score: 248; 24.0% identity (54.8% similar) in 279 aa overlap (40-311:61-329) 10 20 30 40 50 60 pF1KB8 TGLVEELPACQDLQLGLSLLSLLGLVVGVPVGLCYNALLVLANLHSKASMTMPDVYFVNM ..: :.:..:. :.:... .. :::..:. CCDS24 PFLLDAAPCEPESLEINKYFVVIIYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNL 40 50 60 70 80 90 70 80 90 100 110 120 pF1KB8 AVAGLVLSALAPVHLLGPPSSRWALWSVGGEVHVALQIPFNVSSLVAMYSTALLSLDHYI :.: :... :. .:. : : . .... .:. .. : .:.:.:. CCDS24 ALADLLFALTLPIW----AASKVNGWIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYL 100 110 120 130 140 130 140 150 160 170 180 pF1KB8 ERA-LPRTYMASVYNTRHVCGFVWGGALLTSFSSLLFYICSHVSTRALECAK-MQNAEAA . :: . : .. .: .:: .:: .. ::: . :. . : . : : : CCDS24 AIVHATRTLTQKRYLVKFICLSIWGLSLLLALPVLLFRRTVYSSNVSPACYEDMGNNTAN 150 160 170 180 190 200 190 200 210 220 230 240 pF1KB8 DATLVFI-----GYVVPALATLYALVLLSRVRREDTPLDRDTGRLEPSAHRLLVATVCTQ :. : :..:: : :. . : : . :. . : :.. :.: CCDS24 WRMLLRILPQSFGFIVPLLIMLFCYGFTLR-----TLFKAHMGQ-KHRAMRVIFAVVLIF 210 220 230 240 250 260 250 260 270 280 290 300 pF1KB8 FGLWTPHYLILLGHTVIISRGKPVDAHYLGLLHFVKDFSKLLAFSSSFVTPLLYRYMNQS . : :. :.::. :.. .. . . . . : ...:.. : ..::.: ...:. CCDS24 LLCWLPYNLVLLADTLMRTQVIQETCERRNHIDRALDATEILGILHSCLNPLIYAFIGQK 270 280 290 300 310 320 310 320 330 pF1KB8 FPSKLQRLMKKLPCGDRHCSPDHMGVQQVLA : : ... CCDS24 FRHGLLKILAIHGLISKDSLPKDSRPSFVGSSSGHTSTTL 330 340 350 360 >>CCDS2409.1 CXCR1 gene_id:3577|Hs108|chr2 (350 aa) initn: 90 init1: 49 opt: 244 Z-score: 308.7 bits: 65.5 E(32554): 7.1e-11 Smith-Waterman score: 244; 22.2% identity (54.2% similar) in 325 aa overlap (1-311:9-320) 10 20 30 40 pF1KB8 MWSCSWFNGTGLVEELPACQDLQ-LGLSLLSLLGLVVGVPVGLCY------N ::. . .: ::. :: .: . : .: :: . .: . : CCDS24 MSNITDPQMWDFDDLNFTGMP---PADEDYSPCMLETETLNKYVVIIAYALVFLLSLLGN 10 20 30 40 50 50 60 70 80 90 100 pF1KB8 ALLVLANLHSKASMTMPDVYFVNMAVAGLVLSALAPVHLLGPPSSRWALWSVGGEVHVAL .:..:. :.:... .. :::..:.:.: :... :. .:. : : . .. CCDS24 SLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIW----AASKVNGWIFGTFLCKVV 60 70 80 90 100 110 110 120 130 140 150 160 pF1KB8 QIPFNVSSLVAMYSTALLSLDHYIERA-LPRTYMASVYNTRHVCGFVWGGALLTSFSSLL .. .:. .. : .:.:.:. . :: . . .. :: :: .. :. .: CCDS24 SLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWGLSMNLSLPFFL 120 130 140 150 160 170 170 180 190 200 210 pF1KB8 FYICSHVSTRALECAKMQNAEAADATLVF------IGYVVPALATLYALVLLSRVRREDT : : .. . : .. . ..: .:. .:..:: .. :. . : : CCDS24 FRQAYHPNNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLR-----T 180 190 200 210 220 220 230 240 250 260 270 pF1KB8 PLDRDTGRLEPSAHRLLVATVCTQFGLWTPHYLILLGHTVIISRGKPVDAHYLGLLHFVK . :. . : :.. :.: . : :. :.::. :.. .. . . . . . CCDS24 LFKAHMGQ-KHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRAL 230 240 250 260 270 280 280 290 300 310 320 330 pF1KB8 DFSKLLAFSSSFVTPLLYRYMNQSFPSKLQRLMKKLPCGDRHCSPDHMGVQQVLA : ...:.: : ..:..: ...:.: . ... CCDS24 DATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAMHGLVSKEFLARHRVTSYTSSSVNVS 290 300 310 320 330 340 CCDS24 SNL 350 333 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 15:40:50 2016 done: Fri Nov 4 15:40:51 2016 Total Scan time: 2.710 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]