Result of FASTA (omim) for pF1KB8760
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8760, 203 aa
  1>>>pF1KB8760 203 - 203 aa - 203 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6842+/-0.00029; mu= 13.5845+/- 0.018
 mean_var=117.4036+/-24.794, 0's: 0 Z-trim(121.1): 78  B-trim: 1194 in 1/57
 Lambda= 0.118368
 statistics sampled from 37086 (37178) to 37086 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.436), width:  16
 Scan time:  5.330

The best scores are:                                      opt bits E(85289)
XP_005266707 (OMIM: 616512) PREDICTED: E3 ubiquiti ( 203) 1416 251.7   6e-67
XP_005266709 (OMIM: 616512) PREDICTED: E3 ubiquiti ( 203) 1416 251.7   6e-67
XP_011524180 (OMIM: 616512) PREDICTED: E3 ubiquiti ( 203) 1416 251.7   6e-67
XP_016881102 (OMIM: 616512) PREDICTED: E3 ubiquiti ( 203) 1416 251.7   6e-67
NP_775828 (OMIM: 616512) E3 ubiquitin-protein liga ( 203) 1416 251.7   6e-67
XP_016881101 (OMIM: 616512) PREDICTED: E3 ubiquiti ( 203) 1416 251.7   6e-67
XP_011524181 (OMIM: 616512) PREDICTED: E3 ubiquiti ( 203) 1416 251.7   6e-67
NP_061935 (OMIM: 617163) RING finger protein 186 [ ( 227)  202 44.4 0.00017
XP_016869975 (OMIM: 254110,602290,615988) PREDICTE ( 653)  207 45.8 0.00019
XP_005251870 (OMIM: 254110,602290,615988) PREDICTE ( 653)  207 45.8 0.00019
NP_001093149 (OMIM: 254110,602290,615988) E3 ubiqu ( 653)  207 45.8 0.00019
XP_011516700 (OMIM: 254110,602290,615988) PREDICTE ( 653)  207 45.8 0.00019
NP_036342 (OMIM: 254110,602290,615988) E3 ubiquiti ( 653)  207 45.8 0.00019


>>XP_005266707 (OMIM: 616512) PREDICTED: E3 ubiquitin-pr  (203 aa)
 initn: 1416 init1: 1416 opt: 1416  Z-score: 1322.9  bits: 251.7 E(85289): 6e-67
Smith-Waterman score: 1416; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KB8 METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMGCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMGCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LLPGSQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVKSSTWSGVCTVILVACVLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLPGSQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVKSSTWSGVCTVILVACVLV
              130       140       150       160       170       180

              190       200   
pF1KB8 FLLGIVLHNMSCISKRFTVISCG
       :::::::::::::::::::::::
XP_005 FLLGIVLHNMSCISKRFTVISCG
              190       200   

>>XP_005266709 (OMIM: 616512) PREDICTED: E3 ubiquitin-pr  (203 aa)
 initn: 1416 init1: 1416 opt: 1416  Z-score: 1322.9  bits: 251.7 E(85289): 6e-67
Smith-Waterman score: 1416; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KB8 METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMGCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMGCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LLPGSQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVKSSTWSGVCTVILVACVLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLPGSQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVKSSTWSGVCTVILVACVLV
              130       140       150       160       170       180

              190       200   
pF1KB8 FLLGIVLHNMSCISKRFTVISCG
       :::::::::::::::::::::::
XP_005 FLLGIVLHNMSCISKRFTVISCG
              190       200   

>>XP_011524180 (OMIM: 616512) PREDICTED: E3 ubiquitin-pr  (203 aa)
 initn: 1416 init1: 1416 opt: 1416  Z-score: 1322.9  bits: 251.7 E(85289): 6e-67
Smith-Waterman score: 1416; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KB8 METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMGCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMGCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LLPGSQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVKSSTWSGVCTVILVACVLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLPGSQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVKSSTWSGVCTVILVACVLV
              130       140       150       160       170       180

              190       200   
pF1KB8 FLLGIVLHNMSCISKRFTVISCG
       :::::::::::::::::::::::
XP_011 FLLGIVLHNMSCISKRFTVISCG
              190       200   

>>XP_016881102 (OMIM: 616512) PREDICTED: E3 ubiquitin-pr  (203 aa)
 initn: 1416 init1: 1416 opt: 1416  Z-score: 1322.9  bits: 251.7 E(85289): 6e-67
Smith-Waterman score: 1416; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KB8 METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMGCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMGCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LLPGSQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVKSSTWSGVCTVILVACVLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLPGSQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVKSSTWSGVCTVILVACVLV
              130       140       150       160       170       180

              190       200   
pF1KB8 FLLGIVLHNMSCISKRFTVISCG
       :::::::::::::::::::::::
XP_016 FLLGIVLHNMSCISKRFTVISCG
              190       200   

>>NP_775828 (OMIM: 616512) E3 ubiquitin-protein ligase R  (203 aa)
 initn: 1416 init1: 1416 opt: 1416  Z-score: 1322.9  bits: 251.7 E(85289): 6e-67
Smith-Waterman score: 1416; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KB8 METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMGCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 PPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMGCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LLPGSQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVKSSTWSGVCTVILVACVLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 LLPGSQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVKSSTWSGVCTVILVACVLV
              130       140       150       160       170       180

              190       200   
pF1KB8 FLLGIVLHNMSCISKRFTVISCG
       :::::::::::::::::::::::
NP_775 FLLGIVLHNMSCISKRFTVISCG
              190       200   

>>XP_016881101 (OMIM: 616512) PREDICTED: E3 ubiquitin-pr  (203 aa)
 initn: 1416 init1: 1416 opt: 1416  Z-score: 1322.9  bits: 251.7 E(85289): 6e-67
Smith-Waterman score: 1416; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KB8 METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMGCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMGCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LLPGSQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVKSSTWSGVCTVILVACVLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLPGSQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVKSSTWSGVCTVILVACVLV
              130       140       150       160       170       180

              190       200   
pF1KB8 FLLGIVLHNMSCISKRFTVISCG
       :::::::::::::::::::::::
XP_016 FLLGIVLHNMSCISKRFTVISCG
              190       200   

>>XP_011524181 (OMIM: 616512) PREDICTED: E3 ubiquitin-pr  (203 aa)
 initn: 1416 init1: 1416 opt: 1416  Z-score: 1322.9  bits: 251.7 E(85289): 6e-67
Smith-Waterman score: 1416; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KB8 METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMGCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMGCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LLPGSQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVKSSTWSGVCTVILVACVLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLPGSQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVKSSTWSGVCTVILVACVLV
              130       140       150       160       170       180

              190       200   
pF1KB8 FLLGIVLHNMSCISKRFTVISCG
       :::::::::::::::::::::::
XP_011 FLLGIVLHNMSCISKRFTVISCG
              190       200   

>>NP_061935 (OMIM: 617163) RING finger protein 186 [Homo  (227 aa)
 initn: 182 init1: 129 opt: 202  Z-score: 201.9  bits: 44.4 E(85289): 0.00017
Smith-Waterman score: 202; 38.6% identity (60.2% similar) in 83 aa overlap (5-84:33-114)

                                         10        20        30    
pF1KB8                           METLSQDSLLECQICFNYYSPRRRPKLLDCKHTC
                                     : .  ::: .: . ::  : :::: :.:. 
NP_061 CTKTLQQSQPISAGATTTTTAVAPAGGHSGSTECDLECLVCREPYSCPRLPKLLACQHAF
             10        20        30        40        50        60  

           40           50        60        70        80        90 
pF1KB8 CSVCLQQMRTSQKD---VRCPWCRGVTKLPPGFSVSQLPDDPEVLAVIAIPHTSEHTPVF
       :..::. .   : .   . :: :: :: .: :. . .: :   :.. .: : :       
NP_061 CAICLKLLLCVQDNTWSITCPLCRKVTAVPGGL-ICSLRDHEAVVGQLAQPCTEVSLCPQ
             70        80        90        100       110       120 

             100       110       120       130       140       150 
pF1KB8 IKLPSNGCYMLPLPISKERALLPGDMGCRLLPGSQQKSVTVVTIPAEQQPLQGGAPQEAV
                                                                   
NP_061 GLVDPADLAAGHPSLVGEDGQDEVSANHVAARRLAAHLLLLALLIILIGPFIYPGVLRWV
             130       140       150       160       170       180 

>>XP_016869975 (OMIM: 254110,602290,615988) PREDICTED: E  (653 aa)
 initn: 201 init1:  92 opt: 207  Z-score: 201.0  bits: 45.8 E(85289): 0.00019
Smith-Waterman score: 207; 35.5% identity (61.7% similar) in 107 aa overlap (4-99:9-112)

                       10        20         30        40         50
pF1KB8      METLSQDSL---LECQICFNYYSPRR-RPKLLDCKHTCCSVCLQQMRTSQKD-VR
               :. :.:   ::: ::.. .. .. ::::: : :: :  ::... .:. . ::
XP_016 MAAAAASHLNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVR
               10        20        30        40        50        60

               60        70        80        90             100    
pF1KB8 CPWCRGVTKLPPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFI------KLPSNGCYMLPL
       ::.:  .:..    :..:: :.  :: .:     :: . ...      .:: . :     
XP_016 CPFCSKITRIT---SLTQLTDNLTVLKIIDTAGLSEAVGLLMCRSCGRRLPRQFCRSCGL
               70           80        90       100       110       

          110       120       130       140       150       160    
pF1KB8 PISKERALLPGDMGCRLLPGSQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVKSS
                                                                   
XP_016 VLCEPCREADHQPPGHCTLPVKEAAEERRRDFGEKLTRLRELMGELQRRKAALEGVSKDL
       120       130       140       150       160       170       

>>XP_005251870 (OMIM: 254110,602290,615988) PREDICTED: E  (653 aa)
 initn: 201 init1:  92 opt: 207  Z-score: 201.0  bits: 45.8 E(85289): 0.00019
Smith-Waterman score: 207; 35.5% identity (61.7% similar) in 107 aa overlap (4-99:9-112)

                       10        20         30        40         50
pF1KB8      METLSQDSL---LECQICFNYYSPRR-RPKLLDCKHTCCSVCLQQMRTSQKD-VR
               :. :.:   ::: ::.. .. .. ::::: : :: :  ::... .:. . ::
XP_005 MAAAAASHLNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVR
               10        20        30        40        50        60

               60        70        80        90             100    
pF1KB8 CPWCRGVTKLPPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFI------KLPSNGCYMLPL
       ::.:  .:..    :..:: :.  :: .:     :: . ...      .:: . :     
XP_005 CPFCSKITRIT---SLTQLTDNLTVLKIIDTAGLSEAVGLLMCRSCGRRLPRQFCRSCGL
               70           80        90       100       110       

          110       120       130       140       150       160    
pF1KB8 PISKERALLPGDMGCRLLPGSQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVKSS
                                                                   
XP_005 VLCEPCREADHQPPGHCTLPVKEAAEERRRDFGEKLTRLRELMGELQRRKAALEGVSKDL
       120       130       140       150       160       170       




203 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:21:18 2016 done: Fri Nov  4 15:21:19 2016
 Total Scan time:  5.330 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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