Result of FASTA (omim) for pF1KB8745
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8745, 402 aa
  1>>>pF1KB8745 402 - 402 aa - 402 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9102+/-0.000315; mu= 15.2653+/- 0.020
 mean_var=86.4435+/-17.866, 0's: 0 Z-trim(118.4): 21  B-trim: 445 in 1/54
 Lambda= 0.137946
 statistics sampled from 31220 (31241) to 31220 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.366), width:  16
 Scan time:  8.650

The best scores are:                                      opt bits E(85289)
NP_776159 (OMIM: 300701) zinc finger CCHC domain-c ( 402) 2666 540.1 3.7e-153
NP_001299820 (OMIM: 300701) zinc finger CCHC domai ( 402) 2666 540.1 3.7e-153
NP_006020 (OMIM: 604010) paraneoplastic antigen Ma ( 353)  511 111.2 4.2e-24
NP_009188 (OMIM: 603970) paraneoplastic antigen Ma ( 364)  492 107.4 5.9e-23
XP_011542667 (OMIM: 603970) PREDICTED: paraneoplas ( 364)  492 107.4 5.9e-23
NP_001096620 (OMIM: 300916) paraneoplastic antigen ( 448)  489 106.8 1.1e-22
XP_016884741 (OMIM: 300916) PREDICTED: paraneoplas ( 448)  489 106.8 1.1e-22
NP_443158 (OMIM: 300916) paraneoplastic antigen-li ( 448)  489 106.8 1.1e-22
NP_001171853 (OMIM: 300916) paraneoplastic antigen ( 448)  489 106.8 1.1e-22
NP_001096621 (OMIM: 300916) paraneoplastic antigen ( 448)  489 106.8 1.1e-22
XP_016884742 (OMIM: 300916) PREDICTED: paraneoplas ( 448)  489 106.8 1.1e-22
NP_001269464 (OMIM: 300675) paraneoplastic antigen ( 455)  469 102.9 1.7e-21
NP_037496 (OMIM: 300675) paraneoplastic antigen Ma ( 463)  469 102.9 1.7e-21
NP_116271 (OMIM: 300917) paraneoplastic antigen-li ( 399)  465 102.0 2.6e-21
NP_071434 (OMIM: 609485) modulator of apoptosis 1  ( 351)  395 88.1 3.7e-17


>>NP_776159 (OMIM: 300701) zinc finger CCHC domain-conta  (402 aa)
 initn: 2666 init1: 2666 opt: 2666  Z-score: 2870.7  bits: 540.1 E(85289): 3.7e-153
Smith-Waterman score: 2666; 100.0% identity (100.0% similar) in 402 aa overlap (1-402:1-402)

               10        20        30        40        50        60
pF1KB8 MASIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 MASIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEET
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FENWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 FENWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FGESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 FGESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GGELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDDAFIKRKRPKRSESMVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 GGELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDDAFIKRKRPKRSESMVE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 RAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDRAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 RAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDRAR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 PQDEVLVIDSPHNSRAQFPSTSGGSGYKNNGPGEMRRARKRKHTIRCSYCGEEGHSKETC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 PQDEVLVIDSPHNSRAQFPSTSGGSGYKNNGPGEMRRARKRKHTIRCSYCGEEGHSKETC
              310       320       330       340       350       360

              370       380       390       400  
pF1KB8 DNESDKAQVFENLIITLQELTHTEMERSRVAPGEYNDFSEPL
       ::::::::::::::::::::::::::::::::::::::::::
NP_776 DNESDKAQVFENLIITLQELTHTEMERSRVAPGEYNDFSEPL
              370       380       390       400  

>>NP_001299820 (OMIM: 300701) zinc finger CCHC domain-co  (402 aa)
 initn: 2666 init1: 2666 opt: 2666  Z-score: 2870.7  bits: 540.1 E(85289): 3.7e-153
Smith-Waterman score: 2666; 100.0% identity (100.0% similar) in 402 aa overlap (1-402:1-402)

               10        20        30        40        50        60
pF1KB8 MASIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEET
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FENWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FENWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FGESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FGESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GGELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDDAFIKRKRPKRSESMVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDDAFIKRKRPKRSESMVE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 RAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDRAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDRAR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 PQDEVLVIDSPHNSRAQFPSTSGGSGYKNNGPGEMRRARKRKHTIRCSYCGEEGHSKETC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQDEVLVIDSPHNSRAQFPSTSGGSGYKNNGPGEMRRARKRKHTIRCSYCGEEGHSKETC
              310       320       330       340       350       360

              370       380       390       400  
pF1KB8 DNESDKAQVFENLIITLQELTHTEMERSRVAPGEYNDFSEPL
       ::::::::::::::::::::::::::::::::::::::::::
NP_001 DNESDKAQVFENLIITLQELTHTEMERSRVAPGEYNDFSEPL
              370       380       390       400  

>>NP_006020 (OMIM: 604010) paraneoplastic antigen Ma1 [H  (353 aa)
 initn: 500 init1: 460 opt: 511  Z-score: 553.7  bits: 111.2 E(85289): 4.2e-24
Smith-Waterman score: 511; 40.4% identity (68.3% similar) in 218 aa overlap (5-220:119-332)

                                          10        20         30  
pF1KB8                           MASIIARV-GNSRRLNAPLPPWAHSMLRS-LGRS
                                     .::: : .    .: :     ::   :   
NP_006 KVLFKPPTSDAEFLERLHLFLAREGWTVQDVARVLGFQNPTPTPGPEMPAEMLNYILDNV
       90       100       110       120       130       140        

             40        50        60        70        80        90  
pF1KB8 LGPIMASMADRNMKLFSGRVVPAQGEETFENWLTQVNGVLPDWNMSEEEKLKRLMKTLRG
       . :.. :.  . . ::::: .:. :::::. :: ..: :: .:..:. :: .:::..:::
NP_006 IQPLVESIWYKRLTLFSGRDIPGPGEETFDPWLEHTNEVLEEWQVSDVEKRRRLMESLRG
      150       160       170       180       190       200        

            100       110       120       130       140       150  
pF1KB8 PAREVMRVLQATNPNLSVADFLRAMKLVFGESESSVTAHGKFFNTLQAQGEKASLYVIRL
       :: .:.:.:...:: ...:. :.:.. :::  :::  :. ::.:: :  ::: : :::::
NP_006 PAADVIRILKSNNPAITTAECLKALEQVFGSVESSRDAQIKFLNTYQNPGEKLSAYVIRL
      210       220       230       240       250       260        

            160       170       180       190       200       210  
pF1KB8 EVQLQNAIQAGIIAEKDANRTRLQQLLLGGELSRDLRLRLKDFLRMYANEQERLPNFLEL
       :  ::.... : : . ..:..::.:.. :.. :  .: .:     . .  .   ::...:
NP_006 EPLLQKVVEKGAIDKDNVNQARLEQVIAGANHSGAIRRQLW----LTGAGEGPAPNLFQL
      270       280       290       300           310       320    

            220       230       240       250       260       270  
pF1KB8 IRMVREEEDWDDAFIKRKRPKRSESMVERAVSPVAFQGSPPIVIGSADCNVIEIDDTLDD
       . ..::::                                                    
NP_006 LVQIREEEAKEEEEEAEATLLQLGLEGHF                               
          330       340       350                                  

>>NP_009188 (OMIM: 603970) paraneoplastic antigen Ma2 [H  (364 aa)
 initn: 459 init1: 406 opt: 492  Z-score: 533.1  bits: 107.4 E(85289): 5.9e-23
Smith-Waterman score: 492; 38.5% identity (73.2% similar) in 205 aa overlap (22-226:143-341)

                        10        20        30        40        50 
pF1KB8          MASIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGR
                                     :: . ......  :..  :  :....::: 
NP_009 EGQTVSGMFRALGQEGVSPATVPCISPELLAHLLGQAMAHAPQPLLP-MRYRKLRVFSGS
            120       130       140       150        160       170 

              60        70        80        90       100       110 
pF1KB8 VVPAQGEETFENWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVA
       .:::  ::.:: :: :.. .. .: ..: :: . : ..::::: ..:...:: ::..:: 
NP_009 AVPAPEEESFEVWLEQATEIVKEWPVTEAEKKRWLAESLRGPALDLMHIVQADNPSISVE
             180       190       200       210       220       230 

             120       130       140       150       160       170 
pF1KB8 DFLRAMKLVFGESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDAN
       . :.:.: :::  ::  ::. ....: : .:::.: ::.:::. :. :..   : .. :.
NP_009 ECLEAFKQVFGSLESRRTAQVRYLKTYQEEGEKVSAYVLRLETLLRRAVEKRAIPRRIAD
             240       250       260       270       280       290 

             180       190       200       210       220       230 
pF1KB8 RTRLQQLLLGGELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDDAFIKRKR
       ..::.:.. :. :.. :  ::...     ..:   :.::::....::::. . .:     
NP_009 QVRLEQVMAGATLNQMLWCRLREL-----KDQGPPPSFLELMKVIREEEEEEASFENESI
             300       310            320       330       340      

             240       250       260       270       280       290 
pF1KB8 PKRSESMVERAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWG
                                                                   
NP_009 EEPEERDGYGRWNHEGDD                                          
        350       360                                              

>>XP_011542667 (OMIM: 603970) PREDICTED: paraneoplastic   (364 aa)
 initn: 459 init1: 406 opt: 492  Z-score: 533.1  bits: 107.4 E(85289): 5.9e-23
Smith-Waterman score: 492; 38.5% identity (73.2% similar) in 205 aa overlap (22-226:143-341)

                        10        20        30        40        50 
pF1KB8          MASIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGR
                                     :: . ......  :..  :  :....::: 
XP_011 EGQTVSGMFRALGQEGVSPATVPCISPELLAHLLGQAMAHAPQPLLP-MRYRKLRVFSGS
            120       130       140       150        160       170 

              60        70        80        90       100       110 
pF1KB8 VVPAQGEETFENWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVA
       .:::  ::.:: :: :.. .. .: ..: :: . : ..::::: ..:...:: ::..:: 
XP_011 AVPAPEEESFEVWLEQATEIVKEWPVTEAEKKRWLAESLRGPALDLMHIVQADNPSISVE
             180       190       200       210       220       230 

             120       130       140       150       160       170 
pF1KB8 DFLRAMKLVFGESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDAN
       . :.:.: :::  ::  ::. ....: : .:::.: ::.:::. :. :..   : .. :.
XP_011 ECLEAFKQVFGSLESRRTAQVRYLKTYQEEGEKVSAYVLRLETLLRRAVEKRAIPRRIAD
             240       250       260       270       280       290 

             180       190       200       210       220       230 
pF1KB8 RTRLQQLLLGGELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDDAFIKRKR
       ..::.:.. :. :.. :  ::...     ..:   :.::::....::::. . .:     
XP_011 QVRLEQVMAGATLNQMLWCRLREL-----KDQGPPPSFLELMKVIREEEEEEASFENESI
             300       310            320       330       340      

             240       250       260       270       280       290 
pF1KB8 PKRSESMVERAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWG
                                                                   
XP_011 EEPEERDGYGRWNHEGDD                                          
        350       360                                              

>>NP_001096620 (OMIM: 300916) paraneoplastic antigen-lik  (448 aa)
 initn: 492 init1: 411 opt: 489  Z-score: 528.6  bits: 106.8 E(85289): 1.1e-22
Smith-Waterman score: 489; 36.8% identity (69.7% similar) in 228 aa overlap (33-256:147-369)

             10        20        30        40        50        60  
pF1KB8 SIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEETFE
                                     : :   ::  :..:.::: . :. ::::::
NP_001 MTDVARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFE
        120       130       140       150       160       170      

             70        80        90       100       110       120  
pF1KB8 NWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFG
       .:: ::. ..: :..:: :: .::...:::::  .::::::.: ...: . : :.: .::
NP_001 DWLEQVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFG
        180       190       200       210       220       230      

            130       140       150       160       170       180  
pF1KB8 ESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGG
       ..:.  ... .:..:    :::.: ...:::  ::.:.. . .. ....  ::..::   
NP_001 DKEDFRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARV
        240       250       260       270       280       290      

            190       200       210       220         230          
pF1KB8 ELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDD--AFIKRK-RPK-RSESM
        ..  :: .:. .     ...   ::::::....:.::.:..  : .: : .:. :... 
NP_001 AMTPALRGKLELL-----DQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGA
        300            310       320       330       340       350 

      240       250       260       270       280       290        
pF1KB8 VERAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDR
         : .   :  ..:  ..                                          
NP_001 SGRQARAEASVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATY
             360       370       380       390       400       410 

>>XP_016884741 (OMIM: 300916) PREDICTED: paraneoplastic   (448 aa)
 initn: 492 init1: 411 opt: 489  Z-score: 528.6  bits: 106.8 E(85289): 1.1e-22
Smith-Waterman score: 489; 36.8% identity (69.7% similar) in 228 aa overlap (33-256:147-369)

             10        20        30        40        50        60  
pF1KB8 SIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEETFE
                                     : :   ::  :..:.::: . :. ::::::
XP_016 MTDVARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFE
        120       130       140       150       160       170      

             70        80        90       100       110       120  
pF1KB8 NWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFG
       .:: ::. ..: :..:: :: .::...:::::  .::::::.: ...: . : :.: .::
XP_016 DWLEQVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFG
        180       190       200       210       220       230      

            130       140       150       160       170       180  
pF1KB8 ESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGG
       ..:.  ... .:..:    :::.: ...:::  ::.:.. . .. ....  ::..::   
XP_016 DKEDFRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARV
        240       250       260       270       280       290      

            190       200       210       220         230          
pF1KB8 ELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDD--AFIKRK-RPK-RSESM
        ..  :: .:. .     ...   ::::::....:.::.:..  : .: : .:. :... 
XP_016 AMTPALRGKLELL-----DQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGA
        300            310       320       330       340       350 

      240       250       260       270       280       290        
pF1KB8 VERAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDR
         : .   :  ..:  ..                                          
XP_016 SGRQARAEASVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATY
             360       370       380       390       400       410 

>>NP_443158 (OMIM: 300916) paraneoplastic antigen-like p  (448 aa)
 initn: 492 init1: 411 opt: 489  Z-score: 528.6  bits: 106.8 E(85289): 1.1e-22
Smith-Waterman score: 489; 36.8% identity (69.7% similar) in 228 aa overlap (33-256:147-369)

             10        20        30        40        50        60  
pF1KB8 SIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEETFE
                                     : :   ::  :..:.::: . :. ::::::
NP_443 MTDVARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFE
        120       130       140       150       160       170      

             70        80        90       100       110       120  
pF1KB8 NWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFG
       .:: ::. ..: :..:: :: .::...:::::  .::::::.: ...: . : :.: .::
NP_443 DWLEQVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFG
        180       190       200       210       220       230      

            130       140       150       160       170       180  
pF1KB8 ESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGG
       ..:.  ... .:..:    :::.: ...:::  ::.:.. . .. ....  ::..::   
NP_443 DKEDFRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARV
        240       250       260       270       280       290      

            190       200       210       220         230          
pF1KB8 ELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDD--AFIKRK-RPK-RSESM
        ..  :: .:. .     ...   ::::::....:.::.:..  : .: : .:. :... 
NP_443 AMTPALRGKLELL-----DQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGA
        300            310       320       330       340       350 

      240       250       260       270       280       290        
pF1KB8 VERAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDR
         : .   :  ..:  ..                                          
NP_443 SGRQARAEASVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATY
             360       370       380       390       400       410 

>>NP_001171853 (OMIM: 300916) paraneoplastic antigen-lik  (448 aa)
 initn: 492 init1: 411 opt: 489  Z-score: 528.6  bits: 106.8 E(85289): 1.1e-22
Smith-Waterman score: 489; 36.8% identity (69.7% similar) in 228 aa overlap (33-256:147-369)

             10        20        30        40        50        60  
pF1KB8 SIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEETFE
                                     : :   ::  :..:.::: . :. ::::::
NP_001 MTDVARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFE
        120       130       140       150       160       170      

             70        80        90       100       110       120  
pF1KB8 NWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFG
       .:: ::. ..: :..:: :: .::...:::::  .::::::.: ...: . : :.: .::
NP_001 DWLEQVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFG
        180       190       200       210       220       230      

            130       140       150       160       170       180  
pF1KB8 ESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGG
       ..:.  ... .:..:    :::.: ...:::  ::.:.. . .. ....  ::..::   
NP_001 DKEDFRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARV
        240       250       260       270       280       290      

            190       200       210       220         230          
pF1KB8 ELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDD--AFIKRK-RPK-RSESM
        ..  :: .:. .     ...   ::::::....:.::.:..  : .: : .:. :... 
NP_001 AMTPALRGKLELL-----DQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGA
        300            310       320       330       340       350 

      240       250       260       270       280       290        
pF1KB8 VERAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDR
         : .   :  ..:  ..                                          
NP_001 SGRQARAEASVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATY
             360       370       380       390       400       410 

>>NP_001096621 (OMIM: 300916) paraneoplastic antigen-lik  (448 aa)
 initn: 492 init1: 411 opt: 489  Z-score: 528.6  bits: 106.8 E(85289): 1.1e-22
Smith-Waterman score: 489; 36.8% identity (69.7% similar) in 228 aa overlap (33-256:147-369)

             10        20        30        40        50        60  
pF1KB8 SIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEETFE
                                     : :   ::  :..:.::: . :. ::::::
NP_001 MTDVARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFE
        120       130       140       150       160       170      

             70        80        90       100       110       120  
pF1KB8 NWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFG
       .:: ::. ..: :..:: :: .::...:::::  .::::::.: ...: . : :.: .::
NP_001 DWLEQVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFG
        180       190       200       210       220       230      

            130       140       150       160       170       180  
pF1KB8 ESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGG
       ..:.  ... .:..:    :::.: ...:::  ::.:.. . .. ....  ::..::   
NP_001 DKEDFRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARV
        240       250       260       270       280       290      

            190       200       210       220         230          
pF1KB8 ELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDD--AFIKRK-RPK-RSESM
        ..  :: .:. .     ...   ::::::....:.::.:..  : .: : .:. :... 
NP_001 AMTPALRGKLELL-----DQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGA
        300            310       320       330       340       350 

      240       250       260       270       280       290        
pF1KB8 VERAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDR
         : .   :  ..:  ..                                          
NP_001 SGRQARAEASVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATY
             360       370       380       390       400       410 




402 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:10:31 2016 done: Fri Nov  4 15:10:32 2016
 Total Scan time:  8.650 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com