GENSCAN 1.0	Date run:  4-Nov-116	Time: 15:03:31

Sequence gi568815582r:52339228_52646723 : 307496 bp : 39.58% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   8319   8350   32  2  2   51  100    44 0.346   1.16
 1.02 Intr +  20588  20750  163  2  1   57   86   120 0.533   7.76
 1.03 Term +  27493  27657  165  0  0   68   48   152 0.982   6.13
 1.04 PlyA +  29263  29268    6                               1.05

 2.00 Prom +  31119  31158   40                              -9.05
 2.01 Init +  33860  34144  285  1  0   72   35   143 0.471   4.56
 2.02 Intr +  34349  34524  176  1  2   86   82    95 0.692   6.52
 2.03 Intr +  34788  34915  128  0  2  112  -21    41 0.336  -5.00
 2.04 Term +  35296  35582  287  2  2   15   47   221 0.559   5.28
 2.05 PlyA +  36032  36037    6                               1.05

 3.00 Prom +  36127  36166   40                              -9.35
 3.01 Init +  37086  37185  100  2  1   64   94    45 0.716   3.17
 3.02 Intr +  39939  40101  163  1  1   68   22   200 0.756   9.51
 3.03 Intr +  41036  41169  134  2  2   53   66    99 0.557   3.57
 3.04 Term +  70156  70244   89  2  2   86   44   116 0.302   3.84
 3.05 PlyA +  70705  70710    6                               1.05

 4.14 PlyA -  71405  71400    6                               1.05
 4.13 Term -  84153  84017  137  1  2  106   42    25 0.136  -3.10
 4.12 Intr -  85027  84889  139  1  1   40   80    88 0.287   2.32
 4.11 Intr -  95351  95175  177  2  0  -30  105   139 0.027   2.99
 4.10 Intr - 100768 100013  756  1  0   51   82   801 0.036  66.53
 4.09 Intr - 105129 105049   81  0  0   32   92   117 0.924   5.42
 4.08 Intr - 106994 106767  228  2  0  101   94   206 0.985  19.64
 4.07 Intr - 111319 111050  270  1  0   93   89   205 0.914  17.92
 4.06 Intr - 124961 124707  255  2  0   68   66   110 0.255   3.52
 4.05 Intr - 129429 129282  148  2  1   42   92    32 0.008  -1.68
 4.04 Intr - 134354 134248  107  2  2   54   75    93 0.007   2.69
 4.03 Intr - 182470 182296  175  0  1   18   32   128 0.042  -0.78
 4.02 Intr - 187338 187166  173  0  2   76   51   129 0.107   5.82
 4.01 Init - 204120 204067   54  0  0   45  119    55 0.540   5.63
 4.00 Prom - 204964 204925   40                              -6.45

 5.04 PlyA - 206293 206288    6                               1.05
 5.03 Term - 207164 207051  114  2  0   93   48    59 0.491  -0.01
 5.02 Intr - 208408 208141  268  0  1   28   75   235 0.938  12.81
 5.01 Init - 208616 208423  194  2  2   29   75   190 0.341  10.29
 5.00 Prom - 214039 214000   40                              -7.05

 6.00 Prom + 225832 225871   40                              -6.45
 6.01 Init + 226243 226334   92  0  2   36  110    76 0.367   4.62
 6.02 Intr + 228095 228173   79  2  1   28  105    57 0.538   0.03
 6.03 Intr + 228766 228906  141  0  0   58   55    88 0.123   2.13
 6.04 Intr + 235959 236022   64  2  1   79   94    95 0.325   6.57
 6.05 Intr + 244656 244693   38  1  2   63   84    52 0.039  -0.64
 6.06 Intr + 245938 246108  171  0  0   80   21   130 0.339   4.72
 6.07 Intr + 248583 248694  112  2  1   58   59    90 0.143   2.13
 6.08 Intr + 260735 260864  130  0  1   61   56   112 0.008   4.13
 6.09 Intr + 268804 268884   81  1  0   83   59   100 0.051   4.43
 6.10 Intr + 289961 290069  109  2  1   71   92    38 0.723   1.87
 6.11 Term + 290711 290827  117  1  0   67   47   147 0.874   6.06
 6.12 PlyA + 290977 290982    6                               1.05

 7.05 PlyA - 291728 291723    6                               1.05
 7.04 Term - 298532 298361  172  1  1   66   42   105 0.414   0.02
 7.03 Intr - 301450 301379   72  0  0   96   44    85 0.504   2.50
 7.02 Intr - 303197 303017  181  0  1   35   40   161 0.705   4.00
 7.01 Init - 304186 303892  295  1  1   62   86   161 0.349  10.69

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 134187 134335  149  1  2   73   49   159 0.830   7.58
S.002 Intr - 251840 251709  132  1  0  107  115    97 0.901  13.14


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815582r:52339228_52646723|GENSCAN_predicted_peptide_1|119_aa
MIFDKGAKIIQTLTNTDIGTEKWSGATANTQKCGGSFGTWYRVEAGRVLRCMQEKANIAV
KGLLKTIEHGMEKNKKAGRFAQKSITVATAYLRIWNPNEKPSEEEKVHSKNENRIGNVN

>gi568815582r:52339228_52646723|GENSCAN_predicted_CDS_1|360_bp
atgattttcgacaaaggtgccaagataatccaaaccctgacaaatactgatattggtact
gagaagtggagtggtgctacagcaaatacccaaaaatgtggaggcagttttggaacttgg
tatagggtagaggctggaagagttttgagatgcatgcaagaaaaagccaatattgctgtg
aaaggacttttaaagacaatagaacatggcatggagaagaataaaaaagctggtcgattt
gctcagaaatctataactgtcgcaacagcatatttgagaatttggaaccccaatgaaaag
cccagtgaagaagagaaagttcattccaaaaatgagaacagaataggaaatgtgaactga

>gi568815582r:52339228_52646723|GENSCAN_predicted_peptide_2|291_aa
MMLASAQLLGRPQEAYNHGRDKEGASPSHSQSSKEGKRRYYTLLNNWISQELTITDDRTK
EDVVKPLETTCPHDPITSHEAPSPTLRITIQHEIWSFSLCQKREVGSGSLGSFQLCCPMF
QCCCRCWTHLEPPKARSLPISKMKMLMKIVLAPRTQGLTCSKQMDWLPFSICLKAKKQGP
TFTLSEKPRTLVTCSCNDLQKGEATGLKFQSWEVTKLGLDSMTYESQSCSDPTSWAPLMR
HYSVTGTGKLRSEFQANEASTKLPFSDPPPSSTPAVCRVFQPSRKPNAAKQ

>gi568815582r:52339228_52646723|GENSCAN_predicted_CDS_2|876_bp
atgatgctggcatctgctcagcttctggggaggcctcaggaagcttacaatcatggcaga
gacaaagagggagccagcccttcacatagccaaagcagcaaggaggggaagaggaggtac
tacacacttttaaacaactggatctcacaagaactcactatcaccgatgaccgcaccaag
gaggatgttgttaaaccattagaaaccacctgcccccatgatcccattacctcccatgag
gccccatctccaacattgaggattacaattcaacatgagatttggtctttctccctctgc
caaaagagggaagtgggctcagggtccctgggatccttccagctctgctgtccaatgttc
caatgctgctgccgatgttggacgcacctggagccacccaaggccaggtctcttccaatc
agtaaaatgaagatgctaatgaagattgttctggcacctagaactcaaggcctcacctgt
tctaagcaaatggattggctgcctttcagcatctgtcttaaagccaagaaacaaggaccc
acattcactttatcagaaaaacccagaaccctggtcacttgtagctgcaatgaccttcaa
aaaggtgaagcaacaggcctcaagttccaaagctgggaggtcacaaagctgggtcttgac
tccatgacttatgagagtcaatcctgttctgaccccacatcatgggcccctctgatgcgt
cattactcagtaactggcaccgggaaactgaggagtgaatttcaggccaatgaagcatcc
acgaaacttcctttttcagatccccctccaagcagtacccctgctgtctgcagggtcttc
cagccttccaggaagccaaatgcagcaaagcaatga

>gi568815582r:52339228_52646723|GENSCAN_predicted_peptide_3|161_aa
MGPSQIQRYRNSALPVHGKTCKDLTATFSPPPRDNCEAFVKTICTKPETPFSLGFGTNYP
VIGTTPQNLMTALSEGPISKEFLPEANIPKLSSSVRLIQDELVVSVGAKAIAKLKFLYIQ
RPEKGQMCYKATGLDPQKEDLKPEIFAISEEKFHYGYYTIY

>gi568815582r:52339228_52646723|GENSCAN_predicted_CDS_3|486_bp
atgggcccatcccagattcaaaggtacagaaattcggctctacctgttcatggaaagaca
tgcaaagacttgacggcaacatttagtccaccacccagagacaattgtgaagcttttgtg
aagaccatctgcactaaaccagagactccctttagtttgggatttggaaccaactaccct
gtaattggcactactccccagaatcttatgaccgccctctcagagggcccaatttctaaa
gaatttctccctgaagccaacattccgaagctgtcttccagtgtcaggttaattcaagat
gaacttgttgtatcagttggtgcaaaagcaattgcaaaactgaagtttttatatatccaa
aggccagaaaagggacaaatgtgttataaggctacaggcctcgaccctcagaaagaggac
ctgaagcctgagatatttgccatcagtgaagaaaaatttcattatggttactacacaatt
tactaa

>gi568815582r:52339228_52646723|GENSCAN_predicted_peptide_4|899_aa
MLIGTFRISDFWIRDAELPSPTTPIPCRPTISRLYGNEKLLFFTKKIGGDKVINTYFVQE
SIRATILEHSFGLLEGTIQRPLKGPRIIGEIILASTEAVYAQLITALIFRYSSGNSVIGT
DGHAQRQNIFKGHKGVVNRAFTCVWTLQSGLCQHVTVRGTLDPSWHSSFVNTSILSKSQP
ECFIMPHINVKQSVFFQFGNNNNYMNMAEANNAFFAASEQTFHTPSLGDEEFEIPPITPP
PESDPALGMPDVLLPFQALSDPLPSQGSEFTPQFPPQSLDLPSITISRNLVEQDGVLHSS
GLHMDQSHTQVSQYRQDPSLIMRSIVHMTDAARSGVMPPAQLTTINQSQLSAQLGLNLGG
ASMPHTSPSPPASKSATPSPSSSINEEDADEANRAIGEKRAAPDSGKKPKTPKKKKKKDP
NEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAK
KEYLKALAAYRASLVSKSGIFSPKMQAAAESAEAQTIRSVQQTLASTNLTSSLLLNTPLS
QHGTVSASPQTLQQSLPRSIAPKPLTMRLPMNQIVTSVTIAANMPSNIGAPLISSMGTTM
VGSAPSTQVSPSVQTQQHQMQLQQQQQQQQQQMQQMQQQQLQQHQMHQQIQQQMQQQHFQ
HHMQQHLQQQQQHLQQQINQQQLQQQLQQRLQLQQLQHMQHQSQPSPRQHSPVASQITSP
IPAIGSPQPASQQHQSQIQSQTQTQVLSQMCLGGCVGSEQAKIKVILVDVEDISRQGESR
ENPFRLKTQAPQNSRRESNKIGQTAFVETLLSSDSLLLVISPSLALARDTLDSVFQYTVF
LAIADGLRGRHLSVETCQCPKPCWSISPLCKDALCSSLDVTLIYEINEAKLEKHHDPLS

>gi568815582r:52339228_52646723|GENSCAN_predicted_CDS_4|2700_bp
atgctcattggaacatttcggatttcagatttttggattagggatgctgaactgccctcc
cccaccacccccatcccctgccgaccaacgatttcaaggctttatggaaatgaaaagttg
ctcttcttcacaaaaaagattgggggagataaagtgattaacacttattttgttcaggaa
tccatccgagctaccatccttgaacactcatttggcttgttggaaggaaccatccaaagg
cctctgaagggacccaggatcatcggagagatcatacttgcatccactgaagctgtgtac
gcacagttgatcactgcactcatatttaggtactctagtggtaacagtgtcatcggcaca
gatggccatgcacaaaggcaaaacatatttaaggggcataaaggggtagttaaccgagcc
ttcacgtgcgtgtggactttgcagtccggcctctgccagcatgtgaccgtgcgtggcaca
cttgatccatcatggcacagttcatttgtcaacaccagcattctttccaaatcacagcca
gaatgctttattatgccgcatattaacgtaaaacaatctgttttctttcagtttggaaat
aataataactatatgaatatggctgaggcgaacaatgcgttcttcgctgccagtgagcag
acattccacacaccaagccttggggacgaggaattcgaaattccaccaatcacgcctcct
ccagagtcagaccctgccctaggcatgccggatgtactgctaccctttcaagccctcagc
gatccattgccttcccagggaagtgaattcacaccccagtttccccctcaaagcctggac
ctcccttccattacaatctcaagaaatctcgtggaacaagatggcgtgcttcatagcagt
gggttgcatatggatcagagccacacacaagtgtcccagtaccggcaggatccctccctg
atcatgcggtccatcgtccacatgaccgatgctgcgcgttctggggtcatgcctcctgcc
cagctcaccaccatcaaccagtctcagctcagcgcccagttggggttgaatttgggaggt
gccagtatgcctcacacatctccttcacctccagcaagcaaatcagccactccctcccct
tccagctccatcaatgaagaggatgctgatgaagccaacagagccattggagagaaaaga
gctgctccagactctggcaagaagcccaagactccaaagaaaaagaaaaagaaagatccc
aatgagccacagaagccagtgtcagcatatgccctgtttttcagagacacacaggctgca
attaaaggtcaaaaccccaatgcaacctttggagaggtctcaaaaattgtagcatctatg
tgggacagccttggagaagaacaaaagcaggtatataaaaggaaaacagaagctgccaaa
aaagaatacctgaaggccctggcggcatacagggccagcctcgtttctaagtctggaatt
ttctcccccaaaatgcaggctgctgctgagtcagcagaagcccagaccatccgttctgtt
cagcagaccctggcgtcgaccaatctaacatcctctctccttctcaacactccactgtct
caacatggaacagtgtcagcatcacctcagactctccagcaatccctccctaggtcaatc
gctcccaaacccttaaccatgagactccccatgaaccagattgtcacatcagtcaccatt
gcagccaacatgccctcgaacattggggctccactgataagctccatgggaacgaccatg
gttggctcagcaccctccacccaagtgagtccttcggtgcaaacccagcagcatcagatg
caattgcagcagcagcagcagcagcaacaacaacagatgcaacagatgcagcagcagcaa
ctccagcagcaccaaatgcatcagcaaatccagcagcagatgcagcagcagcatttccag
caccacatgcagcagcacctgcagcagcagcagcagcatctccagcagcaaattaatcaa
cagcagctgcagcagcagctgcagcagcgcctccagctgcagcagctgcaacacatgcag
caccagtctcagccttctcctcggcagcactcccctgtcgcctctcagataacatccccc
atccctgccatcgggagcccccagccagcctctcagcagcaccagtcgcaaatacagtct
cagacacagactcaagtattatcgcagatgtgccttggaggttgtgtaggatctgaacag
gccaagataaaagtcatcctggtagatgtagaagacatctcccgccaaggggagagcaga
gaaaatccattcaggttgaaaacacaggcacctcaaaacagcagaagagaatcaaacaaa
attggacaaacagcttttgtggagacactacttagcagtgattctctgctcttggtgatt
tctccttctctggcactggcccgtgacacactggacagtgtttttcaatacacagtcttt
ctggccatagctgatggactcaggggcagacacctgtccgtggaaacttgccaatgcccc
aagccttgttggtcaatatcccctttgtgcaaggatgccctgtgttcatctttagatgta
acattgatatatgagataaatgaggctaaattggaaaagcaccatgatcccctgtcatga

>gi568815582r:52339228_52646723|GENSCAN_predicted_peptide_5|191_aa
MPFEYKQEQREYEENRHEASPGKLQVCLPVKGQAPTPLLGNPTGELGVPAPGYRETLVQV
GVWVRGHSKGKAGSRRGARGQAPMKKEGGHGEESDRKGADGLGMLGPGEAVVAQEEGGTH
GTQGWRPLRPRKGGERGALRGSGDKEDRSGKGGETLLCCPQKAKRARGLKEGLACDCLLL
LLVNTIAAPLD

>gi568815582r:52339228_52646723|GENSCAN_predicted_CDS_5|576_bp
atgcctttcgaatacaaacaagagcaaagagaatacgaagagaaccgacacgaggcttca
cctgggaagcttcaagtctgcctacctgtgaaaggtcaggccccaacaccccttctggga
aatcctacaggtgaacttggggtcccggctcccggctaccgggagacactcgtgcaggtt
ggcgtctgggttaggggacattcgaaaggcaaggcggggtcgaggagaggggcccgggga
caggcacccatgaagaaggaagggggtcatggggaggaaagcgacaggaagggagcagac
ggcttggggatgctggggcccggggaagctgtggtcgcgcaggaggagggtgggacacac
gggacgcagggctggcgtccgcttcggccgaggaaaggaggggagagaggagcgctccga
ggcagtggggacaaagaggaccggagcgggaaggggggcgagactctcctttgctgcccc
caaaaagcgaagagagcccgaggactgaaagaagggctggcgtgtgattgtttgttgctg
ttattagtaaacacgatcgcagcccccctggactga

>gi568815582r:52339228_52646723|GENSCAN_predicted_peptide_6|377_aa
MPGTQQVLNKCLLIQELTVLKPTDGKSVEGSVSSQLCLLAEIPEQVLVWGSCQRVEEVLI
EYGLWCLAPWWQQESPGAGSEWYIMQERGEEVPDNPESLGAAAPVPHLAMWKAEPLRVGG
SCGIPPCRRPIVGPHPVTLPKAFAGNKRIVKLTNISRDKEVWGDNALVNGLVFESLLILQ
HLEDDHEEPMLPSIRMTRLQHEEDAILWNWVSRRRHSKVHEQSEGGASKCRGVLNAGTSK
IMGPASDKSVLAASFHGGMAREGEGEKQKGAKLIPLIGSVLTIQKAVVNGLELSADKEAF
LEFYLRPDPSCQTPTESDPQIARRSLSKLSPPDQKRRSYNKGSALKEADAMLKPITLKLT
PHLGRAGSTITGFPVQE

>gi568815582r:52339228_52646723|GENSCAN_predicted_CDS_6|1134_bp
atgcctggaacacagcaggtgctgaataaatgtttgttgatccaggaactgactgtgttg
aagcccacagatgggaaatcagtagaaggcagtgtttccagtcagctctgcttgctggct
gagataccagagcaagtgctggtctggggaagttgtcagcgtgtagaggaggtgcttatt
gagtatggattgtggtgtcttgcaccttggtggcagcaggaaagtcccggggcaggaagt
gagtggtacataatgcaggagaggggagaggaggtgcctgataaccctgagagtctggga
gctgctgccccagttcctcatcttgcaatgtggaaagcagaacctctccgggttggagga
tcctgtgggatcccaccttgcagacggcctattgtgggacctcatcctgtgacccttccc
aaagcttttgctggtaataaaaggattgtaaagttgacaaatataagcagggacaaagaa
gtttggggagataatgctctagtgaatgggctagtatttgaaagtttattgatcctgcaa
cacctagaagatgatcacgaagagccaatgctgccatcaatcaggatgacaaggctgcag
catgaagaagatgccatattgtggaattgggtgtcaaggagaagacattcgaaggtgcat
gaacagagtgaaggtggtgcaagcaagtgcagaggagttctaaatgctgggacatccaag
atcatgggacccgcatccgacaagagtgttctagctgcatcattccatggtggaatggcc
agagagggtgagggagagaagcaaaagggggccaaactcatccctctgatagggagcgtc
ctcacaattcagaaagcagttgtcaatgggctggagctttcagctgataaggaggcattt
ctggaattctacctcaggcctgatcccagctgccagactccaacggagtcagatcctcaa
attgccaggagatcgctatccaaactgtcaccccctgatcagaaaagaaggagttataac
aaaggatcggcccttaaggaggctgatgcgatgttaaagcccatcactctaaaattgaca
ccacacctgggaagagcaggcagcaccatcactggctttcctgttcaagaatga

>gi568815582r:52339228_52646723|GENSCAN_predicted_peptide_7|239_aa
MDRNQDNSEGLENRNYRKYLVAEQRDEKATTTSKHENTSLLVSLSPNTVCDWLSLSHVPW
WLPGCAEERRGKDRAFLASIMGNEHLICYLIQLTHNGQGSEKYNPTWESCFLAMLCIMEW
EAGTFGGWRLTFATAEEMGDGDGLTAPPMDKGPLWSLGRSTDPQDGNPALPVLSLTLQKK
ERRRKRFVPQATPPLPDLERTVASRAVPSYLLLLHTGTKGPEASPEQRPNWDPTQKELM

>gi568815582r:52339228_52646723|GENSCAN_predicted_CDS_7|720_bp
atggacaggaaccaggacaactctgaagggctagaaaataggaattacagaaagtatctt
gtagcagagcagagggacgagaaagctactaccacctccaaacatgaaaatacctctctc
ctggtttcactctctcctaacacagtatgcgattggttgagtttaagtcatgttccctgg
tggctccctggctgtgctgaggagaggagaggaaaagatagggcctttttggcttccatc
atgggaaatgagcacctgatttgctatctcatccagttgacacacaacggacaaggaagt
gagaaatacaaccccacctgggagagctgtttcctagcaatgctctgcatcatggaatgg
gaagcaggaacctttggaggatggagactaacctttgccacagcagaggaaatgggagat
ggagatggattgacagcccctccaatggataaaggtccactatggagtttgggaagatcc
acagatccacaggatggaaatcctgcattacctgtcctgtctctcactctacaaaagaag
gaacggaggagaaaaaggtttgtcccccaagcaactccccctctgccagacctggagagg
actgtggctagcagggcagtgccgtcttaccttctgctactgcacactgggactaagggg
ccagaggcctcaccagaacaaaggcctaactgggacccaacacagaaggagctcatgtga