Result of FASTA (omim) for pF1KB8710
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8710, 400 aa
  1>>>pF1KB8710 400 - 400 aa - 400 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4477+/-0.000332; mu= 8.3570+/- 0.021
 mean_var=147.3782+/-30.737, 0's: 0 Z-trim(120.3): 145  B-trim: 1785 in 1/52
 Lambda= 0.105647
 statistics sampled from 35119 (35318) to 35119 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.414), width:  16
 Scan time:  9.920

The best scores are:                                      opt bits E(85289)
NP_919445 (OMIM: 300439) E3 ubiquitin-protein liga ( 428)  874 144.6 4.5e-34
NP_078815 (OMIM: 300439) E3 ubiquitin-protein liga ( 402)  817 135.8 1.8e-31
NP_001193927 (OMIM: 612062) E3 ubiquitin-protein l ( 936)  283 54.7 1.1e-06
XP_016861149 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 250)  257 50.3   6e-06
XP_016861147 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262)  257 50.4 6.2e-06
XP_016861148 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262)  257 50.4 6.2e-06
XP_011510678 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262)  257 50.4 6.2e-06
XP_005247149 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262)  257 50.4 6.2e-06
XP_016861146 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262)  257 50.4 6.2e-06
XP_016861145 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262)  257 50.4 6.2e-06
XP_016861143 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 381)  257 50.5 8.3e-06
NP_899237 (OMIM: 609247) E3 ubiquitin-protein liga ( 381)  257 50.5 8.3e-06
XP_016861144 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 381)  257 50.5 8.3e-06
XP_011510675 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 381)  257 50.5 8.3e-06
XP_011510676 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 381)  257 50.5 8.3e-06
NP_009213 (OMIM: 609247) E3 ubiquitin-protein liga ( 381)  257 50.5 8.3e-06
XP_016861150 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 193)  246 48.6 1.6e-05
NP_001307294 (OMIM: 610431) E3 ubiquitin-protein l ( 315)  245 48.6 2.5e-05
NP_001307293 (OMIM: 610431) E3 ubiquitin-protein l ( 315)  245 48.6 2.5e-05
NP_001307291 (OMIM: 610431) E3 ubiquitin-protein l ( 315)  245 48.6 2.5e-05
NP_001307292 (OMIM: 610431) E3 ubiquitin-protein l ( 315)  245 48.6 2.5e-05
XP_016879916 (OMIM: 610431) PREDICTED: E3 ubiquiti ( 350)  245 48.6 2.8e-05
NP_001307287 (OMIM: 610431) E3 ubiquitin-protein l ( 350)  245 48.6 2.8e-05
NP_001307290 (OMIM: 610431) E3 ubiquitin-protein l ( 350)  245 48.6 2.8e-05
NP_001307285 (OMIM: 610431) E3 ubiquitin-protein l ( 350)  245 48.6 2.8e-05
NP_056343 (OMIM: 610431) E3 ubiquitin-protein liga ( 350)  245 48.6 2.8e-05
NP_001307289 (OMIM: 610431) E3 ubiquitin-protein l ( 350)  245 48.6 2.8e-05
NP_001307288 (OMIM: 610431) E3 ubiquitin-protein l ( 350)  245 48.6 2.8e-05
NP_001307286 (OMIM: 610431) E3 ubiquitin-protein l ( 350)  245 48.6 2.8e-05
NP_115549 (OMIM: 612062) E3 ubiquitin-protein liga ( 836)  240 48.1 9.3e-05
XP_016884479 (OMIM: 612062) PREDICTED: E3 ubiquiti ( 841)  240 48.1 9.3e-05
XP_011528737 (OMIM: 612062) PREDICTED: E3 ubiquiti ( 841)  240 48.1 9.3e-05
XP_011528738 (OMIM: 612062) PREDICTED: E3 ubiquiti ( 841)  240 48.1 9.3e-05
XP_011528739 (OMIM: 612062) PREDICTED: E3 ubiquiti ( 841)  240 48.1 9.3e-05
XP_011528740 (OMIM: 612062) PREDICTED: E3 ubiquiti ( 841)  240 48.1 9.3e-05
XP_016877830 (OMIM: 605840) PREDICTED: E3 ubiquiti ( 993)  238 47.9 0.00013
XP_016877829 (OMIM: 605840) PREDICTED: E3 ubiquiti ( 993)  238 47.9 0.00013
XP_016877827 (OMIM: 605840) PREDICTED: E3 ubiquiti ( 994)  238 47.9 0.00013
NP_001257459 (OMIM: 605840) E3 ubiquitin-protein l ( 994)  238 47.9 0.00013
XP_016879917 (OMIM: 610431) PREDICTED: E3 ubiquiti ( 227)  227 45.7 0.00013
XP_016877826 (OMIM: 605840) PREDICTED: E3 ubiquiti (1002)  238 47.9 0.00013
XP_006720642 (OMIM: 605840) PREDICTED: E3 ubiquiti (1003)  238 47.9 0.00013
NP_001317260 (OMIM: 605840) E3 ubiquitin-protein l (1003)  238 47.9 0.00013
XP_006720638 (OMIM: 605840) PREDICTED: E3 ubiquiti (1026)  238 47.9 0.00013
XP_011519999 (OMIM: 605840) PREDICTED: E3 ubiquiti (1030)  238 47.9 0.00014
XP_011519996 (OMIM: 605840) PREDICTED: E3 ubiquiti (1039)  238 47.9 0.00014
NP_001127809 (OMIM: 612489) RING finger protein 24 ( 148)  220 44.5  0.0002
NP_001308678 (OMIM: 612489) RING finger protein 24 ( 148)  220 44.5  0.0002
NP_009150 (OMIM: 612489) RING finger protein 24 is ( 148)  220 44.5  0.0002
XP_011527448 (OMIM: 612489) PREDICTED: RING finger ( 163)  220 44.6 0.00021


>>NP_919445 (OMIM: 300439) E3 ubiquitin-protein ligase R  (428 aa)
 initn: 610 init1: 561 opt: 874  Z-score: 732.8  bits: 144.6 E(85289): 4.5e-34
Smith-Waterman score: 874; 41.3% identity (68.8% similar) in 356 aa overlap (20-369:26-375)

                     10        20        30        40        50    
pF1KB8       MAWRRREASVGARGVLALALLALALCVPGARGRALEWFSAVVNIEYVDPQT--N
                                ::::.  .::.::    : .: .:. .  :.:  :
NP_919 MGPPPGAGVSCRGGCGFSRLLAWCFLLALSPQAPGSRGAEAVW-TAYLNVSWRVPHTGVN
               10        20        30        40         50         

             60        70        80        90       100        110 
pF1KB8 LTVWSVSESGRFGDSSPKEGAHGLVGVPWAPGGDLEGCAPDTRFFVPEPGGRGA-APWVA
        ::: .:: : .:..:: : . :..  : .::. :..: : : : ::   :  . . :.:
NP_919 RTVWELSEEGVYGQDSPLEPVAGVLVPPDGPGA-LNACNPHTNFTVPTVWGSTVQVSWLA
      60        70        80        90        100       110        

              120       130       140       150       160       170
pF1KB8 LVARGG-CTFKDKVLVAARRNASAVVLYNEERYGNITLPMSHAGTGNIVVIMISYPKGRE
       :. ::: ::: ::. .: .:.::..:..:     : ..:::: :. .::.:::.  :: .
NP_919 LIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMIGNLKGTK
      120       130       140       150       160       170        

              180       190       200       210       220       230
pF1KB8 ILELVQKGIPVTMTIGVGTRHVQEFISGQSVVFVAIAFITMMIISLAWLIFYYIQRFLYT
       ::. .:.:: :::.: :: .:   ...  :. ::...:. .   .....:::  .:.  .
NP_919 ILQSIQRGIQVTMVIEVGKKH-GPWVNHYSIFFVSVSFFIITAATVGYFIFYSARRLRNA
      180       190        200       210       220       230       

              240        250       260       270       280         
pF1KB8 GSQIGSQSHRK-ETKKVIGQLLLHTVKHGEKGIDVDAENCAVCIENFKVKDIIRILPCKH
        .:  .: . : ..::.::.: :.:.:.:.: :  :...:::::: .: .:..::: :.:
NP_919 RAQSRKQRQLKADAKKAIGRLQLRTLKQGDKEIGPDGDSCAVCIELYKPNDLVRILTCNH
       240       250       260       270       280       290       

     290       300       310       320       330       340         
pF1KB8 IFHRICIDPWLLDHRTCPMCKLDVIKALGYWGEPGDVQEMPAPESPPGRDPAANLSLALP
       :::. :.:::::.:::::::: :..::::      ::..  .  . :  .  .: . .  
NP_919 IFHKTCVDPWLLEHRTCPMCKCDILKALGI---EVDVEDGSVSLQVPVSNEISNSASSHE
       300       310       320          330       340       350    

     350       360        370       380       390       400        
pF1KB8 DDDGSDESSPPSAS-PAESEPQCDPSFKGDAGENTALLEAGRSDSRHGGPIS        
       .:. :. .:   ::  . .::                                       
NP_919 EDNRSETASSGYASVQGTDEPPLEEHVQSTNESLQLVNHEANSVAVDVIPHVDNPTFEED
          360       370       380       390       400       410    

>>NP_078815 (OMIM: 300439) E3 ubiquitin-protein ligase R  (402 aa)
 initn: 618 init1: 618 opt: 817  Z-score: 686.2  bits: 135.8 E(85289): 1.8e-31
Smith-Waterman score: 817; 39.6% identity (69.1% similar) in 333 aa overlap (39-369:29-349)

       10        20        30        40        50        60        
pF1KB8 SVGARGVLALALLALALCVPGARGRALEWFSAVVNIEYVDPQTNLTVWSVSESGRFGDSS
                                     :: :.. : .  .: :.  . : : .: .:
NP_078   MNQENRSSFFWLLVIFTFLLKITASFSMSAYVTVTYYNETSNYTAIETCECGVYGLAS
                 10        20        30        40        50        

       70        80        90       100       110       120        
pF1KB8 PKEGAHGLVGVPWAPGGDLEGCAPDTRFFVPEPGGRGAAPWVALVARGGCTFKDKVLVAA
       :  .: :.::.:   ... ..:  .:.:      .    ::.::. ::.:::..:. .:.
NP_078 PVANAMGVVGIP--KNNNYQACDHNTEF------SNTKKPWIALIERGNCTFSEKIQTAG
       60        70          80              90       100       110

      130       140       150       160       170       180        
pF1KB8 RRNASAVVLYNEERYGNITLPMSHAGTGNIVVIMISYPKGREILELVQKGIPVTMTIGVG
       ::::.:::.::  . :: :. :.. :. .::.:::.  :: .::. .:.:: :::.: ::
NP_078 RRNADAVVIYNAPETGNQTIQMANFGAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVG
              120       130       140       150       160       170

      190       200       210       220       230       240        
pF1KB8 TRHVQEFISGQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGSQIGSQSHRK-ETKKVI
        .:   ...  :. ::...:. .   .....:::  .:.  . .:  .: . : ..::.:
NP_078 KKH-GPWVNHYSIFFVSVSFFIITAATVGYFIFYSARRLRNARAQSRKQRQLKADAKKAI
               180       190       200       210       220         

       250       260       270       280       290       300       
pF1KB8 GQLLLHTVKHGEKGIDVDAENCAVCIENFKVKDIIRILPCKHIFHRICIDPWLLDHRTCP
       :.: :.:.:.:.: :  :...:::::: .: .:..::: :.::::. :.:::::.:::::
NP_078 GRLQLRTLKQGDKEIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLEHRTCP
     230       240       250       260       270       280         

       310       320       330       340       350       360       
pF1KB8 MCKLDVIKALGYWGEPGDVQEMPAPESPPGRDPAANLSLALPDDDGSDESSPPSAS-PAE
       ::: :..::::      ::..  .  . :  .  .: . .  .:. :. .:   ::  . 
NP_078 MCKCDILKALGI---EVDVEDGSVSLQVPVSNEISNSASSHEEDNRSETASSGYASVQGT
     290       300          310       320       330       340      

        370       380       390       400                      
pF1KB8 SEPQCDPSFKGDAGENTALLEAGRSDSRHGGPIS                      
       .::                                                     
NP_078 DEPPLEEHVQSTNESLQLVNHEANSVAVDVIPHVDNPTFEEDETPNQETAVREIKS
        350       360       370       380       390       400  

>>NP_001193927 (OMIM: 612062) E3 ubiquitin-protein ligas  (936 aa)
 initn: 257 init1: 227 opt: 283  Z-score: 241.1  bits: 54.7 E(85289): 1.1e-06
Smith-Waterman score: 293; 26.1% identity (52.8% similar) in 371 aa overlap (16-360:39-393)

                              10        20        30         40    
pF1KB8                MAWRRREASVGARGVLALALLALALCVPGARGRALEW-FSAVVNI
                                     : :.:: ::   ::: .:: :  :  :: .
NP_001 PGATGRRRRRLRRRPRGLRCSRLPPPPPLPLLLGLL-LAAAGPGA-ARAKETAFVEVVLF
       10        20        30        40         50         60      

           50        60        70        80        90       100    
pF1KB8 EYVDPQTNLTVWSVSESGRFGDSSPKEGAHGLVGVPWAPGGDLEGCAPDTRFFVPEPGGR
       :  .:. . :..... .:::. ..   .:.: . :   : :    :  . .  . : :  
NP_001 ES-SPSGDYTTYTTGLTGRFSRAGATLSAEGEI-VQMHPLGL---CNNNDEEDLYEYGWV
          70        80        90        100          110       120 

            110       120       130       140       150       160  
pF1KB8 GAAP--WVALVARGGCTFKDKVLVAARRNASAVVLYNEERYGNITLPMSHAGTGNIVVIM
       :..      :  .   :   :.  :..:.:.::..   :    :   . . :. . .   
NP_001 GVVKLEQPELDPKPCLTVLGKAKRAVQRGATAVIFDVSENPEAID--QLNQGSEDPLKRP
             130       140       150       160         170         

            170       180       190       200             210      
pF1KB8 ISYPKGREILELVQKGIPVTMTIGVGTRHVQEFISGQSV------VFVAIAFITMMIISL
       . : :: . ..:..    ..    :.  ..:.    : .      .:.:. :... .. :
NP_001 VVYVKGADAIKLMN----IVNKQKVARARIQHRPPRQPTEYFDMGIFLAF-FVVVSLVCL
     180       190           200       210       220        230    

        220         230       240        250       260             
pF1KB8 AWLIFYYIQ--RFLYTGSQIGSQSHRK-ETKKVIGQLLLHTVKHGEKG-IDV----DAEN
         :.   ..  :   . .... :. .: ::.:  ..   .  ..:  : .:.    .. .
NP_001 ILLVKIKLKQRRSQNSMNRLAVQALEKMETRKFNSK--SKGRREGSCGALDTLSSSSTSD
          240       250       260       270         280       290  

      270       280       290       300       310       320        
pF1KB8 CAVCIENFKVKDIIRILPCKHIFHRICIDPWLLDHRTCPMCKLDVIKALGYWGEP-----
       ::.:.:..   . .:..:: : ::: :.:::::.:.::: :. ..:.  :  .       
NP_001 CAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNIIEQKGNPSAVCVETS
            300       310       320       330       340       350  

               330       340       350       360       370         
pF1KB8 ----GDVQEMPAPESPPGRDPAANLSLALPDDDGSDESSPPSASPAESEPQCDPSFKGDA
           :  :..  :   :::   .:   : :   . :  . :                   
NP_001 NLSRGRQQRVTLPVHYPGRVHRTNAIPAYPTRTSMDSHGNPVTLLTMDRHGEQSLYSPQT
            360       370       380       390       400       410  

     380       390       400                                       
pF1KB8 GENTALLEAGRSDSRHGGPIS                                       
                                                                   
NP_001 PAYIRSYPPLHLDHSLAAHRCGLEHRAYSPAHPFRRPKLSGRSFSKAACFSQYETMYQHY
            420       430       440       450       460       470  

>>XP_016861149 (OMIM: 609247) PREDICTED: E3 ubiquitin-pr  (250 aa)
 initn: 205 init1: 156 opt: 257  Z-score: 227.8  bits: 50.3 E(85289): 6e-06
Smith-Waterman score: 257; 30.8% identity (56.8% similar) in 146 aa overlap (203-345:51-188)

            180       190       200       210       220       230  
pF1KB8 ELVQKGIPVTMTIGVGTRHVQEFISGQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGS
                                     .  : :. .. : :  .....: .:.    
XP_016 ESSANSLKDEFTYEKGGHLILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRH
               30        40        50        60        70        80

            240       250       260       270       280       290  
pF1KB8 QIGSQSHRKETKKVIGQLLLHTVKHGEKGIDVDAENCAVCIENFKVKDIIRILPCKHIFH
       .   .  ::.  :   .: .:  :.:..  ::    ::.:.....  : .:::::.: .:
XP_016 RARRNRLRKDQLK---KLPVHKFKKGDE-YDV----CAICLDEYEDGDKLRILPCSHAYH
               90          100            110       120       130  

            300        310       320         330       340         
pF1KB8 RICIDPWLLD-HRTCPMCKLDVIKALGYWGEPGDV--QEMPAPESPPGRDPAANLSLALP
         :.::::   ..:::.::  :. . :      :   .:  . :  :   : :..:    
XP_016 CKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQEENEVTEHTPLLRPLASVSAQSF
            140       150       160       170       180       190  

     350       360       370       380       390       400       
pF1KB8 DDDGSDESSPPSASPAESEPQCDPSFKGDAGENTALLEAGRSDSRHGGPIS       
                                                                 
XP_016 GALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINEHDVVVQLQPNGERDYNIANTV
            200       210       220       230       240       250

>>XP_016861147 (OMIM: 609247) PREDICTED: E3 ubiquitin-pr  (262 aa)
 initn: 228 init1: 156 opt: 257  Z-score: 227.5  bits: 50.4 E(85289): 6.2e-06
Smith-Waterman score: 257; 30.8% identity (56.8% similar) in 146 aa overlap (203-345:63-200)

            180       190       200       210       220       230  
pF1KB8 ELVQKGIPVTMTIGVGTRHVQEFISGQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGS
                                     .  : :. .. : :  .....: .:.    
XP_016 ESSANSLKDEFTYEKGGHLILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRH
             40        50        60        70        80        90  

            240       250       260       270       280       290  
pF1KB8 QIGSQSHRKETKKVIGQLLLHTVKHGEKGIDVDAENCAVCIENFKVKDIIRILPCKHIFH
       .   .  ::.  :   .: .:  :.:..  ::    ::.:.....  : .:::::.: .:
XP_016 RARRNRLRKDQLK---KLPVHKFKKGDE-YDV----CAICLDEYEDGDKLRILPCSHAYH
            100          110        120           130       140    

            300        310       320         330       340         
pF1KB8 RICIDPWLLD-HRTCPMCKLDVIKALGYWGEPGDV--QEMPAPESPPGRDPAANLSLALP
         :.::::   ..:::.::  :. . :      :   .:  . :  :   : :..:    
XP_016 CKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQEENEVTEHTPLLRPLASVSAQSF
          150       160       170       180       190       200    

     350       360       370       380       390       400       
pF1KB8 DDDGSDESSPPSASPAESEPQCDPSFKGDAGENTALLEAGRSDSRHGGPIS       
                                                                 
XP_016 GALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINEHDVVVQLQPNGERDYNIANTV
          210       220       230       240       250       260  

>>XP_016861148 (OMIM: 609247) PREDICTED: E3 ubiquitin-pr  (262 aa)
 initn: 228 init1: 156 opt: 257  Z-score: 227.5  bits: 50.4 E(85289): 6.2e-06
Smith-Waterman score: 257; 30.8% identity (56.8% similar) in 146 aa overlap (203-345:63-200)

            180       190       200       210       220       230  
pF1KB8 ELVQKGIPVTMTIGVGTRHVQEFISGQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGS
                                     .  : :. .. : :  .....: .:.    
XP_016 ESSANSLKDEFTYEKGGHLILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRH
             40        50        60        70        80        90  

            240       250       260       270       280       290  
pF1KB8 QIGSQSHRKETKKVIGQLLLHTVKHGEKGIDVDAENCAVCIENFKVKDIIRILPCKHIFH
       .   .  ::.  :   .: .:  :.:..  ::    ::.:.....  : .:::::.: .:
XP_016 RARRNRLRKDQLK---KLPVHKFKKGDE-YDV----CAICLDEYEDGDKLRILPCSHAYH
            100          110        120           130       140    

            300        310       320         330       340         
pF1KB8 RICIDPWLLD-HRTCPMCKLDVIKALGYWGEPGDV--QEMPAPESPPGRDPAANLSLALP
         :.::::   ..:::.::  :. . :      :   .:  . :  :   : :..:    
XP_016 CKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQEENEVTEHTPLLRPLASVSAQSF
          150       160       170       180       190       200    

     350       360       370       380       390       400       
pF1KB8 DDDGSDESSPPSASPAESEPQCDPSFKGDAGENTALLEAGRSDSRHGGPIS       
                                                                 
XP_016 GALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINEHDVVVQLQPNGERDYNIANTV
          210       220       230       240       250       260  

>>XP_011510678 (OMIM: 609247) PREDICTED: E3 ubiquitin-pr  (262 aa)
 initn: 228 init1: 156 opt: 257  Z-score: 227.5  bits: 50.4 E(85289): 6.2e-06
Smith-Waterman score: 257; 30.8% identity (56.8% similar) in 146 aa overlap (203-345:63-200)

            180       190       200       210       220       230  
pF1KB8 ELVQKGIPVTMTIGVGTRHVQEFISGQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGS
                                     .  : :. .. : :  .....: .:.    
XP_011 ESSANSLKDEFTYEKGGHLILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRH
             40        50        60        70        80        90  

            240       250       260       270       280       290  
pF1KB8 QIGSQSHRKETKKVIGQLLLHTVKHGEKGIDVDAENCAVCIENFKVKDIIRILPCKHIFH
       .   .  ::.  :   .: .:  :.:..  ::    ::.:.....  : .:::::.: .:
XP_011 RARRNRLRKDQLK---KLPVHKFKKGDE-YDV----CAICLDEYEDGDKLRILPCSHAYH
            100          110        120           130       140    

            300        310       320         330       340         
pF1KB8 RICIDPWLLD-HRTCPMCKLDVIKALGYWGEPGDV--QEMPAPESPPGRDPAANLSLALP
         :.::::   ..:::.::  :. . :      :   .:  . :  :   : :..:    
XP_011 CKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQEENEVTEHTPLLRPLASVSAQSF
          150       160       170       180       190       200    

     350       360       370       380       390       400       
pF1KB8 DDDGSDESSPPSASPAESEPQCDPSFKGDAGENTALLEAGRSDSRHGGPIS       
                                                                 
XP_011 GALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINEHDVVVQLQPNGERDYNIANTV
          210       220       230       240       250       260  

>>XP_005247149 (OMIM: 609247) PREDICTED: E3 ubiquitin-pr  (262 aa)
 initn: 228 init1: 156 opt: 257  Z-score: 227.5  bits: 50.4 E(85289): 6.2e-06
Smith-Waterman score: 257; 30.8% identity (56.8% similar) in 146 aa overlap (203-345:63-200)

            180       190       200       210       220       230  
pF1KB8 ELVQKGIPVTMTIGVGTRHVQEFISGQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGS
                                     .  : :. .. : :  .....: .:.    
XP_005 ESSANSLKDEFTYEKGGHLILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRH
             40        50        60        70        80        90  

            240       250       260       270       280       290  
pF1KB8 QIGSQSHRKETKKVIGQLLLHTVKHGEKGIDVDAENCAVCIENFKVKDIIRILPCKHIFH
       .   .  ::.  :   .: .:  :.:..  ::    ::.:.....  : .:::::.: .:
XP_005 RARRNRLRKDQLK---KLPVHKFKKGDE-YDV----CAICLDEYEDGDKLRILPCSHAYH
            100          110        120           130       140    

            300        310       320         330       340         
pF1KB8 RICIDPWLLD-HRTCPMCKLDVIKALGYWGEPGDV--QEMPAPESPPGRDPAANLSLALP
         :.::::   ..:::.::  :. . :      :   .:  . :  :   : :..:    
XP_005 CKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQEENEVTEHTPLLRPLASVSAQSF
          150       160       170       180       190       200    

     350       360       370       380       390       400       
pF1KB8 DDDGSDESSPPSASPAESEPQCDPSFKGDAGENTALLEAGRSDSRHGGPIS       
                                                                 
XP_005 GALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINEHDVVVQLQPNGERDYNIANTV
          210       220       230       240       250       260  

>>XP_016861146 (OMIM: 609247) PREDICTED: E3 ubiquitin-pr  (262 aa)
 initn: 228 init1: 156 opt: 257  Z-score: 227.5  bits: 50.4 E(85289): 6.2e-06
Smith-Waterman score: 257; 30.8% identity (56.8% similar) in 146 aa overlap (203-345:63-200)

            180       190       200       210       220       230  
pF1KB8 ELVQKGIPVTMTIGVGTRHVQEFISGQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGS
                                     .  : :. .. : :  .....: .:.    
XP_016 ESSANSLKDEFTYEKGGHLILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRH
             40        50        60        70        80        90  

            240       250       260       270       280       290  
pF1KB8 QIGSQSHRKETKKVIGQLLLHTVKHGEKGIDVDAENCAVCIENFKVKDIIRILPCKHIFH
       .   .  ::.  :   .: .:  :.:..  ::    ::.:.....  : .:::::.: .:
XP_016 RARRNRLRKDQLK---KLPVHKFKKGDE-YDV----CAICLDEYEDGDKLRILPCSHAYH
            100          110        120           130       140    

            300        310       320         330       340         
pF1KB8 RICIDPWLLD-HRTCPMCKLDVIKALGYWGEPGDV--QEMPAPESPPGRDPAANLSLALP
         :.::::   ..:::.::  :. . :      :   .:  . :  :   : :..:    
XP_016 CKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQEENEVTEHTPLLRPLASVSAQSF
          150       160       170       180       190       200    

     350       360       370       380       390       400       
pF1KB8 DDDGSDESSPPSASPAESEPQCDPSFKGDAGENTALLEAGRSDSRHGGPIS       
                                                                 
XP_016 GALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINEHDVVVQLQPNGERDYNIANTV
          210       220       230       240       250       260  

>>XP_016861145 (OMIM: 609247) PREDICTED: E3 ubiquitin-pr  (262 aa)
 initn: 228 init1: 156 opt: 257  Z-score: 227.5  bits: 50.4 E(85289): 6.2e-06
Smith-Waterman score: 257; 30.8% identity (56.8% similar) in 146 aa overlap (203-345:63-200)

            180       190       200       210       220       230  
pF1KB8 ELVQKGIPVTMTIGVGTRHVQEFISGQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGS
                                     .  : :. .. : :  .....: .:.    
XP_016 ESSANSLKDEFTYEKGGHLILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRH
             40        50        60        70        80        90  

            240       250       260       270       280       290  
pF1KB8 QIGSQSHRKETKKVIGQLLLHTVKHGEKGIDVDAENCAVCIENFKVKDIIRILPCKHIFH
       .   .  ::.  :   .: .:  :.:..  ::    ::.:.....  : .:::::.: .:
XP_016 RARRNRLRKDQLK---KLPVHKFKKGDE-YDV----CAICLDEYEDGDKLRILPCSHAYH
            100          110        120           130       140    

            300        310       320         330       340         
pF1KB8 RICIDPWLLD-HRTCPMCKLDVIKALGYWGEPGDV--QEMPAPESPPGRDPAANLSLALP
         :.::::   ..:::.::  :. . :      :   .:  . :  :   : :..:    
XP_016 CKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQEENEVTEHTPLLRPLASVSAQSF
          150       160       170       180       190       200    

     350       360       370       380       390       400       
pF1KB8 DDDGSDESSPPSASPAESEPQCDPSFKGDAGENTALLEAGRSDSRHGGPIS       
                                                                 
XP_016 GALSESRSHQNMTESSDYEEDDNEDTDSSDAENEINEHDVVVQLQPNGERDYNIANTV
          210       220       230       240       250       260  




400 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:48:55 2016 done: Fri Nov  4 14:48:57 2016
 Total Scan time:  9.920 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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