GENSCAN 1.0	Date run:  4-Nov-116	Time: 14:49:20

Sequence gi568815596r:101177241_101408588 : 231348 bp : 43.44% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 PlyA -   5361   5356    6                               1.05
 1.03 Term -  19390  19298   93  1  0   66   45    78 0.260  -0.87
 1.02 Intr -  24966  24944   23  1  2  108  115    16 0.479   3.56
 1.01 Init -  43352  43313   40  2  1  105   94    30 0.788   5.65
 1.00 Prom -  53781  53742   40                              -0.86

 2.00 Prom +  56822  56861   40                              -4.16
 2.01 Init +  75725  76238  514  1  1   32   82   729 0.626  59.77
 2.02 Intr +  76609  76655   47  2  2   53   48   104 0.829   1.03
 2.03 Intr +  80598  80715  118  2  1   80  107   148 0.860  15.94
 2.04 Intr +  85299  85451  153  1  0   77   56   118 0.953   7.54
 2.05 Intr +  87605  87807  203  0  2   61   89   107 0.985   7.10
 2.06 Intr +  89437  89639  203  0  2   50  123   136 0.969  11.38
 2.07 Term +  91230  91338  109  0  1   50   48    82 0.861  -1.62
 2.08 PlyA +  92753  92758    6                               1.05

 3.03 PlyA -  94005  94000    6                               1.05
 3.02 Term -  94504  94440   65  2  2  118   39    22 0.357  -1.65
 3.01 Init -  96043  95887  157  1  1   80   90    99 0.875   7.99
 3.00 Prom -  96705  96666   40                              -4.76

 4.07 PlyA -  96848  96843    6                               1.05
 4.06 Term -  97037  96861  177  2  0    9   42   125 0.871  -2.31
 4.05 Intr -  97498  97352  147  1  0   31   94   165 0.203  11.83
 4.04 Intr - 117941 117691  251  0  2  117   95   128 0.731  13.56
 4.03 Intr - 126910 126826   85  1  1  107  100   -31 0.460  -0.61
 4.02 Intr - 130805 130702  104  0  2   31  107    49 0.480   0.99
 4.01 Init - 131348 130889  460  2  1  105   88   965 0.909  92.12
 4.00 Prom - 135261 135222   40                              -5.76

 5.00 Prom + 136715 136754   40                              -7.06
 5.01 Sngl + 139141 139476  336  0  0   75   37   251 0.793  14.73
 5.02 PlyA + 140025 140030    6                               1.05

 6.00 Prom + 140872 140911   40                              -2.16
 6.01 Sngl + 142482 142886  405  2  0   60   38   228 0.982  11.28
 6.02 PlyA + 143019 143024    6                               1.05

 7.00 Prom + 143778 143817   40                              -2.46
 7.01 Init + 148388 148441   54  1  0   74  103    52 0.715   6.58
 7.02 Term + 152604 152663   60  2  0   74   41    37 0.085  -4.60
 7.03 PlyA + 152961 152966    6                               1.05

 8.03 PlyA - 154472 154467    6                               1.05
 8.02 Term - 164804 164658  147  2  0  121   54    48 0.805   2.60
 8.01 Init - 165959 165894   66  2  0   81  105    54 0.956   7.47
 8.00 Prom - 169178 169139   40                              -6.06

 9.00 Prom + 170082 170121   40                               0.84
 9.01 Init + 174155 174226   72  1  0   68   70    30 0.241   0.27
 9.02 Intr + 178509 178546   38  2  2   83   84    47 0.558   0.86
 9.03 Intr + 178724 178773   50  2  2   73  105    54 0.349   3.92
 9.04 Intr + 187112 187235  124  0  1   31   99    66 0.028   1.64
 9.05 Intr + 187794 187905  112  0  1   14   77    52 0.572  -2.92
 9.06 Intr + 187951 188130  180  0  0  110   83    53 0.815   7.06
 9.07 Intr + 194413 194660  248  0  2   73   85    57 0.101   0.16
 9.08 Term + 198647 198818  172  2  1   89   39   139 0.845   6.40
 9.09 PlyA + 200384 200389    6                               1.05

10.06 PlyA - 201967 201962    6                               1.05
10.05 Term - 203314 203275   40  0  1   63   42    37 0.240  -6.74
10.04 Intr - 204251 203812  440  2  2   63   53   234 0.813   9.71
10.03 Intr - 204891 204714  178  2  1   72   36    76 0.981   0.72
10.02 Intr - 206462 206293  170  2  2   52   74   204 0.998  14.14
10.01 Init - 210442 209777  666  1  0   67  105   766 0.724  69.43
10.00 Prom - 212666 212627   40                              -2.56

11.03 PlyA - 213041 213036    6                               1.05
11.02 Term - 220484 220308  177  2  0   78   50    94 0.860   2.29
11.01 Init - 225312 225196  117  0  0   99   97   120 0.352  14.35
11.00 Prom - 228227 228188   40                              -1.46

12.02 PlyA - 229518 229513    6                               1.05
12.01 Term - 230769 230549  221  1  2   40   38   185 0.766   5.90

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl + 140654 141190  537  1  0   49   48   196 0.855   7.78


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:101177241_101408588|GENSCAN_predicted_peptide_1|51_aa
MAIALSNDNTVKKEIHVIDGKRVQDTASGLSDNTCSNGQSGQHTDCHSPMV

>gi568815596r:101177241_101408588|GENSCAN_predicted_CDS_1|156_bp
atggccattgcactatcaaatgacaacacagtcaaaaaagaaatacatgttattgatggc
aagcgggtacaggatacagcttcaggcttgtctgacaacacctgttccaatggtcagagt
ggacagcacactgactgccacagtcctatggtctga

>gi568815596r:101177241_101408588|GENSCAN_predicted_peptide_2|448_aa
MPGGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGR
MSLTPKELSSLLSIISEEAGGGSTFEGLSTAFHHYFSKADHFRLGSVLVMLLQQPDLLPS
AAQRLTALYLLWEMYRTEPLAANPFAASFAHLLNPAPPARGGQEPDRPPLSVSKEYVEVS
IKKLKKLLMLAPPRELFKKTPRQIALMDVGNMGQSVDISGLQLALAERQSELPTQSKASF
PSILSDPDPDSSNSGFDSSVASQITEALVSGPKPPIESHFRPEFIRPPPPLHICEDELAW
LNPTEPDHAIQWDKSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHI
GLTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRASSLNVK
HVFWRRTNLKRLQQLMTVSLEHYILMPY

>gi568815596r:101177241_101408588|GENSCAN_predicted_CDS_2|1347_bp
atgcccggcggaggggcgagcgcggcgtctggccggcttctcaccgccgcggagcaaaga
gggtcccgggaagcggcagggtcggcgtccaggagcggcttcgggggctccggcggcggc
agaggcggagcaagcggccccgggtccgggagcggaggcccggggggccccgcgggcagg
atgagcttgaccccgaaggagctctcgagcctgctgagcatcatatcggaggaggcgggc
ggcggcagcaccttcgagggcctgtccaccgccttccaccactacttcagcaaggccgac
cacttccgcctgggctcggtgctcgtcatgctgctccagcagcccgacctgctgcctagc
gcggcgcagcgcctcacggcgctctacctgctctgggagatgtaccgcaccgagccgctg
gccgccaaccccttcgccgccagcttcgcgcacctgctcaaccccgcgccgcccgcccgc
ggcggccaggaacccgaccgccctccgctctcagtctcaaaggagtacgtggaagtcagt
attaagaagctgaagaagttgctgatgctggcacccccacgggaactcttcaaaaagacg
cctcgccagattgcactgatggacgttggaaacatgggccagtctgtggacattagtggg
cttcagttagccttggccgaacgccaatctgaattgccaacgcaaagcaaagcgagcttc
cccagtattctcagtgacccagacccggattcttctaattctggatttgacagctcagtt
gcctctcagatcacagaagctttagtcagcggaccaaagccacctattgaaagccatttt
cgaccagagtttattcgtccaccgcctccactccacatttgtgaggatgaacttgcttgg
ctaaaccccacggagcctgaccacgcgatccagtgggataaatcgatgtgtgttaagaat
agcactggtgtggagatcaaacgaataatggccaaagccttcaaaagccccttatcctct
ccccaacaaacacagctacttggtgagttggaaaaagaccccaaacttgtctaccatatt
ggcctcaccccagccaaacttcctgaccttgtggaaaacaaccctttagtcgctatagaa
atgttgctgaaattaatgcagtcaagccagatcactgagtatttctctgtcctggtcaat
atggacatgtctttacattcaatggaagttgtaaatcgtgcatcatccttaaacgtgaaa
cacgttttttggcgacgcacaaatctcaagagactgcagcagctcatgacagtgtccttg
gagcactacatcctcatgccttattga

>gi568815596r:101177241_101408588|GENSCAN_predicted_peptide_3|73_aa
MEKEAVSVTVLLSAAPCLLSCFLGSSVSGLAFWVSQQKTKGPERCKNTHHLAGDLKILKL
EIGTRKSKEFKAS

>gi568815596r:101177241_101408588|GENSCAN_predicted_CDS_3|222_bp
atggagaaggaggcagtgtccgtgactgtgctgctctccgcagccccctgcctgctgtcc
tgtttcctcggctcctcggtgtctggactggcgttctgggtttcccagcagaaaactaaa
gggccagagaggtgtaaaaacacacaccacttggcaggtgatttgaagatattaaagcta
gaaattggaactagaaaatcaaaagaattcaaggcatcttaa

>gi568815596r:101177241_101408588|GENSCAN_predicted_peptide_4|407_aa
MAWRRREASVGARGVLALALLALALCVPGARGRALEWFSAVVNIEYVDPQTNLTVWSVSE
SGRFGDSSPKEGAHGLVGVPWAPGGDLEGCAPDTRFFVPEPGGRGAAPWVALVARGGCTF
KDKVLVAARRNASAVVLYNEERYGNITLPMSHAGREAGLARLSGLWLLELSGKPSFARCG
SPIAVGRECWECKPPHLSKERDLMQVLQKYQSKLDQGTGNIVVIMISYPKGREILELVQK
GIPVTMTIGVGTRHVQEFISGQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGSQIGSQ
LMKLTFKKKAVSFADAAAAQGPLLPAMVNPTMFFHIAVDGEPLGCVSFERERFPVFYLPC
QDAKTEWLDCKHVVFGKVKDGMNIVEVMEHLGSKNGKISNQQEDHHC

>gi568815596r:101177241_101408588|GENSCAN_predicted_CDS_4|1224_bp
atggcgtggcggcggcgcgaagccagcgtcggggctcgcggcgtgttggctctggcgttg
ctcgccctggccctgtgcgtgcccggggcccggggccgggctctcgagtggttctcggcc
gtggtaaacatcgagtacgtggacccgcagaccaacctgacggtgtggagcgtctcggag
agtggccgcttcggcgacagctcgcccaaggagggcgcgcatggcctggtgggcgtcccg
tgggcgcccggcggagacctcgagggctgcgcgcccgacacgcgcttcttcgtgcccgag
cccggcggccgaggggccgcgccctgggtcgccctggtggctcgtgggggctgcaccttc
aaggacaaggtgctggtggcggcgcggaggaacgcctcggccgtcgtcctctacaatgag
gagcgctacgggaacatcaccttgcccatgtctcacgcgggccgcgaagcgggcctggca
cggctctcaggcctctggctgttggaactttcagggaagccctcgtttgctcggtgcggc
tccccgatcgctgttgggagggagtgctgggagtgtaagccaccacacctgtctaaggaa
agggatttaatgcaggtattgcaaaagtatcaaagtaagcttgaccaaggaacaggaaat
atagtggtcattatgattagctatccaaaaggaagagaaattttggagctggtgcaaaaa
ggaattccagtaacgatgaccataggggttggcacccggcatgtacaggagttcatcagc
ggtcagtctgtggtgtttgtggccattgccttcatcaccatgatgattatctcgttagcc
tggctaatattttactatatacagcgtttcctatatactggctctcagattggaagtcag
ctaatgaagctgacttttaaaaagaaggctgtgagctttgcagatgctgctgccgcccag
ggccccctgcttccagccatggtcaaccccaccatgtttttccacattgctgtcgatggc
gagcccttgggctgtgtctccttcgagcgtgaacgtttcccagttttttatctgccctgc
caagatgccaagacagagtggttggattgcaagcatgtggtctttggcaaggtgaaagat
ggcatgaatattgtggaggtcatggagcacttggggtccaagaatggcaagatcagcaat
cagcaagaagatcaccattgctga

>gi568815596r:101177241_101408588|GENSCAN_predicted_peptide_5|111_aa
MMRNQSRKDENSKNQSASSPPKERSSLPATEQSWTENDFDELREGFRRSVITNFSKLKED
VQTHRKEAKNLEKRLDEWLTRINSIEKTLNDLMELKTMARELCDACTSFSS

>gi568815596r:101177241_101408588|GENSCAN_predicted_CDS_5|336_bp
atgatgagaaaccagagcagaaaagatgaaaattctaaaaatcagagtgcctcttctcct
ccaaaggaacgcagctccttgccagcaacagaacaaagctggacggagaatgactttgat
gagttgagagaaggcttcagacgatcagtaataacaaacttctccaagctaaaggaggat
gttcaaacccatcgcaaagaagctaaaaaccttgagaaaagattagacgaatggctaact
agaataaacagcatagagaagaccttaaatgacctgatggagctgaaaaccatggcacga
gaactatgtgacgcatgcacaagcttcagtagctga

>gi568815596r:101177241_101408588|GENSCAN_predicted_peptide_6|134_aa
MSELPFTIATKRIKYLGIQLTRDVKDLFKENYKPLLKEIREETNKWKNIPCSWIGRINFV
KMAMLPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRARIAKTILSQKNKAGGITLP
DFKLYYKATVTKTA

>gi568815596r:101177241_101408588|GENSCAN_predicted_CDS_6|405_bp
atgagtgaactcccattcacaattgctacaaagagaataaaatacctaggaatccaactt
acaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaaggaaataaga
gaggagacaaacaaatggaagaacattccatgctcatggataggaagaatcaatttcgtg
aaaatggccatgctgcccaaggtaatttatagattcaatgccatccccatcaagctacca
atgactttcttcacagaactggaaaaaactactttaaagttcatatggaaccaaaaaaga
gcccgcattgccaagacaatcctaagccaaaagaacaaagctggaggcatcacactacct
gacttcaaactatactacaaggctacagtaaccaaaacagcatag

>gi568815596r:101177241_101408588|GENSCAN_predicted_peptide_7|37_aa
MVFDEKLAVNLIEDHSYVNTPLRLSDFELAVLIECIL

>gi568815596r:101177241_101408588|GENSCAN_predicted_CDS_7|114_bp
atggtttttgatgagaaattagcagttaatcttattgaggatcactcgtatgtgaataca
cccttaaggttaagtgactttgaacttgctgtgctcatagaatgcatcttatag

>gi568815596r:101177241_101408588|GENSCAN_predicted_peptide_8|70_aa
MDGGGDREHGGWGEPDAAVTVKHPTLSLLSTVAVPGNGPRLREEQLQRTETRLHLHPSQA
VSSLVLTATL

>gi568815596r:101177241_101408588|GENSCAN_predicted_CDS_8|213_bp
atggacggtggaggtgaccgggaacatggtggctggggtgagccagatgccgcagtcaca
gtgaagcaccccaccctctccctgctctcgacagtggctgtccctggcaatggccccagg
ctcagggaggagcagctccagcggaccgagaccaggctccatctgcatccttcacaagcc
gtgtcttccctggtcctcacggcgaccctgtga

>gi568815596r:101177241_101408588|GENSCAN_predicted_peptide_9|331_aa
MLMRLFIGLCGEAGNEPHRKHLQREGEYTGEQVQELGFLSGIQEESGHTDLKADASSTSH
PNPSCNNQKGLQTLPNVPGEESLSSLFEIHWWKCSKSGVWVVRTWLEKLECRMRLPHSAE
GKNKRMAAERKMGNPRTNRILLFGASLSGICRKHCVVPETAPFQAGCFQTSQLVNVPVKL
WDPELPLKLQQEGKLCCFEGHTGQQPQLALALPVLQRPQGQTSRMEVAAQTKVSKAVLED
QGMVWAFQREEPWTGKSQEAESQERKTMKSWGINRHWGLGQVVTDCVQGGGSQKAVKAGL
SAVSAFSFAGLCCFNCHDMGICKAAVMLWKL

>gi568815596r:101177241_101408588|GENSCAN_predicted_CDS_9|996_bp
atgctgatgcggctcttcatagggctgtgtggggaagcaggcaatgaaccacacagaaaa
cacctgcagagagagggggagtacacaggtgagcaggttcaggagctggggttcttgtct
ggcatccaggaagaatcaggtcatacagacttaaaggctgatgccagcagtacctcccac
cccaacccaagttgtaacaaccaaaaaggtctccagacattgccaaatgtccctggggag
gagtctctcagctccctgtttgagatccactggtggaaatgcagcaaatctggagtgtgg
gtggtgagaacctggctggagaagctggagtgtaggatgcgccttccacacagtgctgaa
ggcaagaacaagaggatggcagcagagaggaaaatgggtaaccctagaacaaataggatt
ctcctgttcggtgctagcctttccggcatctgcagaaagcactgtgttgttcctgagact
gctcctttccaggctggctgctttcagacatcccagcttgtcaatgttcctgttaaatta
tgggatccagaactgcccttgaaactccagcaggaggggaagctttgctgcttcgagggt
cacactggccagcagccccagctggccttagctctccccgtgctgcagagacctcaagga
caaacaagcaggatggaagtggctgcacaaaccaaggtcagcaaggctgtcctagaagac
cagggaatggtatgggcttttcagagggaggagccttggactgggaagtcccaggaggct
gagtcacaagagaggaagacaatgaaatcctggggaataaatcgtcactggggccttgga
caagtcgttactgactgtgttcaagggggtggatctcagaaggctgtcaaggcaggcctg
tcggcagtttcagctttcagctttgctgggctgtgctgtttcaactgtcacgacatgggc
atctgcaaagctgctgtcatgctgtggaagctctga

>gi568815596r:101177241_101408588|GENSCAN_predicted_peptide_10|497_aa
MRGVCVEPGLLRAWTSELRARLQGFAGTRAGDRARGSCRGGKGARAPCFRRSGALPGSPA
LALLAAPAAGRAACKMSVRRGRRPARPGTRLSWLLCCSALLSPAAGYVIVSSVSWAVTNE
VDEELDSASTEEAMPALLEDSGSIWQQSFPASAHKEDAHLRPRAGAARARPPPAPPGMFS
YRREGGQTASAPPGPRLRAATARSLAHASVWGCLATVSTHKKIQGLPFGNCLPVSDGPFN
NSTGIPFFYMTAKDPVVADLMKNPMASLMLPESEGEFCRYPESSRAGACGSQNPEHSRSG
DRQQNIYLGQSCGSTPAGGGFVNWQPPGKWQQELERGAGLRLPIIGVSPDVTHLCEVRIP
SGALHFRFHLQNLGNTEHRDLTSQSHVAGIEKEPRINKPSKGFLGPLEYSEVSGRSVRSY
PNTWVELRRTARQGTSKVPLLPVAGPEEVSSKGRDRRHVLQSFTASPTGAGRFKKAPMSY
DDNDRGKTKPELGFTGP

>gi568815596r:101177241_101408588|GENSCAN_predicted_CDS_10|1494_bp
atgcgcggcgtgtgcgtggaacctggtcttctgcgagcctggacttctgagcttcgcgcg
cggctgcagggattcgccgggactcgcgcgggggaccgcgcccggggatcctgcaggggc
gggaagggggctcgggctccttgcttccgccgcagtggggcgctgccgggctccccggca
ctagcgctgctggcggccccggcggccgggcgtgctgcctgcaagatgtccgtgcgccgc
ggccggcggccggcgcggccggggacccgcctctcctggctgctgtgctgcagcgccctg
ctgtccccggccgcgggctacgtgatcgtgagctccgtgtcttgggccgtcaccaacgag
gtggacgaggagctggacagcgcctccactgaggaggctatgcccgcgctgctagaggat
tcgggcagcatctggcagcaaagcttccccgcctctgcccacaaggaggacgcgcacctg
cggccccgggcgggcgccgcccgggccaggccgccccccgcgccacccgggatgttctcc
taccggcgcgagggcggccagacggccagtgcgcccccgggccctagactgcgcgccgcc
accgcccgctccctggcccatgccagcgtctggggctgcctggccaccgtgtccacccac
aagaagatccaaggactgccatttgggaactgcctgcccgtcagtgatggccccttcaac
aatagcactgggattcctttcttctacatgacagccaaggaccccgtggtggctgatctg
atgaagaaccccatggcctcgctgatgctgccagaatcagaaggggagttctgcaggtat
cctgaaagcagtcgtgctggagcatgtggctcccagaacccagagcacagccgctctggg
gacaggcaacagaatatatacttgggacaaagctgcggcagcactccagctgggggagga
tttgtcaactggcaacccccaggcaaatggcagcaggagctggagcgaggagcaggtcta
cgacttcccataatcggcgtaagcccagatgtgactcacctgtgtgaggttcgcattcca
agtggagctttacattttaggtttcaccttcagaatcttggcaatactgaacacagggac
ttaacaagtcaaagccatgtggctggcattgaaaaagagccccgaataaacaagccaagc
aaggggttcctagggccactggaatatagcgaggtatctggtagaagtgtccgcagctac
ccaaacacctgggtagagcttcgaaggacagcccggcaaggtaccagcaaggtgcccctc
ctgcctgtcgccgggcctgaagaggtctccagcaaaggcagagatcgtcgtcacgtgctt
cagagcttcacagcatctcccacaggagcggggagattcaagaaagcgcccatgtcttac
gatgataacgacagggggaagacaaagccagaactgggctttactggaccataa

>gi568815596r:101177241_101408588|GENSCAN_predicted_peptide_11|97_aa
MEPLGVMPTHMGQGRYPVGVSNMVLRILGFLVDTAMGNKLIQVLLEDETTESAVKLSLPM
GQEALITLKDGQQFVIQISDVPQSSEDIYFRENNANV

>gi568815596r:101177241_101408588|GENSCAN_predicted_CDS_11|294_bp
atggagccactgggggtgatgcccacacacatgggccagggccgatatcccgtgggtgtg
agcaacatggtcctcaggatcctgggcttcctggtggacactgccatgggcaataagctc
atccaggtgctgttggaagatgaaaccactgaaagcgcagttaaactcagccttcctatg
ggacaagaagccctcataaccctaaaagatggacaacaatttgtgattcagatatcagat
gtaccccaaagctctgaagatatttatttcagagaaaacaatgctaatgtgtga

>gi568815596r:101177241_101408588|GENSCAN_predicted_peptide_12|73_aa
XWLIFTKPDYCQSSAQTIKMHTFGLVRDAPWLQLASGSQRAEGSSGPGGASTLGDMKCHT
VDVTGRKLNGVHG

>gi568815596r:101177241_101408588|GENSCAN_predicted_CDS_12|222_bp
ncttggctgatctttacaaaaccagattattgtcaatcaagtgctcagactattaagatg
cacacctttgggcttgtcagagatgccccatggcttcagttagcatctggcagtcagcga
gcagagggcagttcgggccctggaggagcttctacgttgggggacatgaagtgccacact
gtggacgtgacgggaagaaagctcaatggtgttcatggctga