GENSCAN 1.0	Date run:  4-Nov-116	Time: 14:46:09

Sequence gi568815595f:115576024_115820879 : 244856 bp : 39.34% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  11980  12039   60  0  0   81  121    32 0.938   7.10
 1.02 Term +  15299  15409  111  1  0   75   40    88 0.119   0.28
 1.03 PlyA +  15980  15985    6                               1.05

 2.06 PlyA -  21350  21345    6                               1.05
 2.05 Term -  23005  22780  226  0  1   81   39   111 0.077   0.77
 2.04 Intr -  48537  48455   83  0  2   59   90    64 0.060   1.22
 2.03 Intr -  52823  52710  114  2  0   23   90   121 0.608   5.52
 2.02 Intr -  59485  59433   53  2  2  113   82    -6 0.347  -0.99
 2.01 Init -  61265  61208   58  2  1   64   88    31 0.546   2.22
 2.00 Prom -  63274  63235   40                              -5.65

 3.00 Prom +  70786  70825   40                              -5.45
 3.01 Init +  72633  72828  196  2  1   65   61    91 0.277   3.24
 3.02 Term +  83087  83214  128  0  2  109   49   110 0.083   6.66
 3.03 PlyA +  83585  83590    6                               1.05

 4.00 Prom +  84284  84323   40                              -4.45
 4.01 Init +  90971  91015   45  1  0   84   55    25 0.118  -0.47
 4.02 Intr +  99990 100587  598  2  1   80   71   946 0.555  83.28
 4.03 Term + 144771 144859   89  1  2  101   43   128 0.976   6.44
 4.04 PlyA + 145365 145370    6                               1.05

 5.00 Prom + 146539 146578   40                              -4.55
 5.01 Init + 153554 153634   81  1  0   78  100    75 0.210   8.72
 5.02 Term + 156305 156373   69  1  0   78   54    27 0.071  -4.74
 5.03 PlyA + 156592 156597    6                               1.05

 6.02 PlyA - 157376 157371    6                               1.05
 6.01 Sngl - 158879 157908  972  2  0   70   36   339 0.993  23.38
 6.00 Prom - 159832 159793   40                              -6.15

 7.02 PlyA - 160010 160005    6                               1.05
 7.01 Sngl - 160578 160180  399  0  0   60   38   189 0.530   7.11
 7.00 Prom - 161594 161555   40                              -4.35

 8.00 Prom + 167473 167512   40                              -6.75
 8.01 Init + 169995 170064   70  2  1   63   56    59 0.015   1.46
 8.02 Term + 172622 173166  545  0  2   48   41   223 0.329   7.04
 8.03 PlyA + 173273 173278    6                               1.05

 9.00 Prom + 174036 174075   40                              -3.15
 9.01 Sngl + 176310 176969  660  2  0   36   38   238 0.896   9.52
 9.02 PlyA + 177142 177147    6                               1.05

10.00 Prom + 180523 180562   40                              -3.75
10.01 Init + 182734 182756   23  0  2   63  100    29 0.408   0.95
10.02 Term + 190787 190895  109  2  1  102   34   143 0.957   7.30
10.03 PlyA + 192194 192199    6                               1.05

11.12 PlyA - 193083 193078    6                               1.05
11.11 Term - 193461 193245  217  2  1  -20   48   171 0.008  -2.07
11.10 Intr - 201688 201547  142  2  1   20   65   101 0.021  -0.51
11.09 Intr - 206241 206005  237  1  0   -2   71   188 0.239   4.76
11.08 Intr - 216066 215732  335  2  2  -23   68   348 0.514  15.99
11.07 Intr - 217358 217275   84  1  0   98   89    73 0.549   6.42
11.06 Intr - 218709 218578  132  2  0   50   87    66 0.360   1.54
11.05 Intr - 220748 220681   68  2  2   64   93    43 0.431  -0.82
11.04 Intr - 221519 221346  174  2  0  101   33    67 0.441   1.71
11.03 Intr - 222415 222210  206  2  2   83   19   169 0.803   7.50
11.02 Intr - 233301 233207   95  2  2   44   86    65 0.087   0.59
11.01 Intr - 235227 235083  145  1  1   99   75    46 0.814   2.82

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  82931  82482  450  2  0   63   49   218 0.838   9.60
S.002 Init + 144367 144481  115  0  1   41   59    96 0.892   2.42
S.003 Term + 170453 170609  157  2  1   79   46   192 0.801  10.52


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595f:115576024_115820879|GENSCAN_predicted_peptide_1|56_aa
MGLKTKHLAGDGGGQKWVEKLLVFNKCSLTSLAKWRDDTVAHRIGFSEAQDPVPTS

>gi568815595f:115576024_115820879|GENSCAN_predicted_CDS_1|171_bp
atggggttaaaaaccaagcaccttgctggggatggaggggggcaaaagtgggtggagaag
ctcctggtcttcaacaaatgctccttaacctcacttgcaaaatggagggatgacactgtt
gctcatcgcataggatttagtgaagcccaagacccagtgcctacctcatag

>gi568815595f:115576024_115820879|GENSCAN_predicted_peptide_2|177_aa
MHCTGYLTLKEFANYLAESVIEILISSSILVSLKRCKVAKDLDVDDLMRSPRISESNEKS
GMNEDYDPGDHRFGEDVSLSLVTDNPRKEAREGDKRKDLVSNSCVLVHFHAADKDILETG
KKKRSNWTYSSTWLGRPQNHGKGTSYMAAARKSEGEAKMETPDKLIRSLETYSLSQE

>gi568815595f:115576024_115820879|GENSCAN_predicted_CDS_2|534_bp
atgcactgtactggatatcttacccttaaagagtttgcaaactacttggcagaatcagtt
atagaaatcctcatttcctcctccatactggtttcactcaagaggtgtaaggtggctaaa
gatttggatgtggatgacctgatgagatcacctaggattagtgagtcaaacgagaagagt
ggaatgaatgaagattatgatccaggagatcatagatttggggaggatgttagcctgtct
ctggtcactgacaatcccaggaaagaagcaagggaaggggataagagaaaagacctggtt
tccaacagttgtgttttagtccattttcatgctgctgataaagacatactagagactggg
aagaaaaagaggtctaattggacttacagttccacatggctggggaggccccagaatcat
ggcaaaggcacttcttacatggcggcggcaagaaaaagtgaaggagaagcaaaaatggaa
acccctgataaactcatcagatctcttgagacttattcactatcacaagaatag

>gi568815595f:115576024_115820879|GENSCAN_predicted_peptide_3|107_aa
MTQRLIESLFIFVALVEEGLERKELREGLTHPSVAEDTSFREKERAVSKSIWDQGSQQKE
SSKINGPGEWKSGRQEGFFVSKSGPLETKQQCSVFRRQHRKEQTAEE

>gi568815595f:115576024_115820879|GENSCAN_predicted_CDS_3|324_bp
atgactcaaaggctgattgagagcttattcatcttcgtggcattagttgaggaagggtta
gaaagaaaagagctaagagaagggcttactcacccttcagtggcagaagatacttcattc
agagaaaaagaaagagcagttagtaaaagcatatgggatcagggaagccaacaaaaagaa
agctctaaaataaatgggccaggggagtggaagagcggccggcaggaaggtttctttgtc
agcaaaagcggacctttggaaactaaacagcaatgctctgtctttagaagacagcacagg
aaggaacaaacagctgaggagtga

>gi568815595f:115576024_115820879|GENSCAN_predicted_peptide_4|243_aa
MKAPALVTWSENTQPVEKNDDDQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKLKGEK
KDDVQAAEAEANKKDEAPVADGVEKKGEGTTTAEAAPATGSKPDEPGKAGETPSEEKKGE
GDAATEQAAPQAPASSEEKAGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVPAAVT
AAAATTPAAEDAAAKATAQPPTETGESSQAEENIEAVDETKPKESARQDEGKEEEPEADQ
EHA

>gi568815595f:115576024_115820879|GENSCAN_predicted_CDS_4|732_bp
atgaaggctccagcattagtgacctggagcgagaacacccagccagttgaaaaaaatgat
gacgaccaaaagattgaacaagatggtatcaaaccagaagataaagctcataaggccgca
accaaaattcaggctagcttccgtggacacataacaaggaaaaagctcaaaggagagaag
aaggatgatgtccaagctgctgaggctgaagctaataagaaggatgaagcccctgttgcc
gatggggtggagaagaagggagaaggcaccactactgccgaagcagccccagccactggc
tccaagcctgatgagcccggcaaagcaggagaaactccttccgaggagaagaagggggag
ggtgatgctgccacagagcaggcagccccccaggctcctgcatcctcagaggagaaggcc
ggctcagctgagacagaaagtgccactaaagcttccactgataactcgccgtcctccaag
gctgaagatgccccagccaaggaggagcctaaacaagccgatgtgcctgctgctgtcact
gctgctgctgccaccacccctgccgcagaggatgctgctgccaaggcaacagcccagcct
ccaacggagactggggagagcagccaagctgaagagaacatagaagctgtagatgaaacc
aaacctaaggaaagtgcccggcaggacgagggtaaagaagaggaacctgaggctgaccaa
gaacatgcctga

>gi568815595f:115576024_115820879|GENSCAN_predicted_peptide_5|49_aa
MWRREPFQEKERDSPGNICPLDVTMPEALGCDVPHPVSKCSHRSIPTYE

>gi568815595f:115576024_115820879|GENSCAN_predicted_CDS_5|150_bp
atgtggaggagagagcctttccaagaaaaggaaagagacagtcctggtaacatttgtcct
ctagatgtaacaatgcctgaagccctggggtgtgatgttccccaccctgtgtccaagtgt
tctcatcgttcaattccaacctatgagtga

>gi568815595f:115576024_115820879|GENSCAN_predicted_peptide_6|323_aa
MDKFLDTYTPPRLNQEEVECLNKPITGSEIEAIINSLTTKKRPGPDGFTAEFYQSYKEEL
VPFVLKLFQSIEKEGILLNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILA
NRIQQHIKNLIHHNQIGVITGMQGWFTICKSMNIIHHINRTNDKSHVIISIDAEKAFDKI
QQPFMLKTLNKPGIDGTYLKIIGAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLF
NIVLEVLARAIRQEKEIKHIQLGKEEVRLSLFADDIIVYLENPIISAQNLLKLINNFSKI
SGYKINVQKSHTFLYTNNMQTES

>gi568815595f:115576024_115820879|GENSCAN_predicted_CDS_6|972_bp
atggataaattcctggacacatacacccccccgagactaaaccaggaagaagttgaatgt
ctgaataaaccaataacaggctctgaaattgaggcaataattaatagcctaacaaccaaa
aaaaggccaggaccagacggattcacagccgaattctatcagagttacaaagaggagctg
gtaccattcgttctgaaactattccaatcaatagaaaaagagggaatccttcttaactca
ttttatgaggccagcatcatcctgataccaaagcctggcagagacacaacaaaaaaagag
aattttagaccaatatccctgatgaacatcgatgcaaaaatcctcaataaaatactggca
aaccgaatccagcagcacatcaaaaaccttatccaccataatcaaatcggtgttatcact
gggatgcaaggctggttcaccatatgcaaatcaatgaacataatccatcacataaacaga
accaatgacaaaagccacgtgattatctcaatagatgcagaaaaggccttcgacaaaatt
caacaacccttcatgctaaaaactctcaataaaccaggtattgatggaacatatctcaaa
ataatcggagctatatatgacaaacctacagccaatatcattctgaatgggcaaaaactg
gaagcattccctttgaaaactggcacaagacagggatgccctctctcaccactcctattc
aacatagtgttggaagttctggccagggcaatcaggcaagagaaagaaataaagcatatt
caattaggaaaagaggaagtcagactgtccctgtttgcagatgacataattgtatattta
gaaaaccccatcatctcagcccaaaatctccttaagctgataaacaacttcagcaaaatc
tcaggatacaaaatcaatgtgcaaaaatcacacacattcctgtataccaataacatgcaa
acagagagctag

>gi568815595f:115576024_115820879|GENSCAN_predicted_peptide_7|132_aa
MKEKMLRAARKKGRVTQKEKPIRLTADLLAETLQARRKWEPIFNILKEKNFQPRISYPAK
QSFTSEGEIKSFTDKQTLRHFVTTRPALQEILKEALNMERKNGYQPLQKTYQIVKTIDAR
KKLHQLIGKITS

>gi568815595f:115576024_115820879|GENSCAN_predicted_CDS_7|399_bp
atgaaggaaaaaatgttaagggcagccagaaagaaaggtcgggttacccagaaagagaag
cccatcagactaacagcggatctcttggcagaaactctgcaagccagaagaaagtgggag
ccaatatttaacattctcaaagaaaagaattttcagcccagaatttcatatccagccaaa
caaagcttcacaagtgaaggagaaataaaatcctttacagataagcaaacgctgagacat
tttgtcaccaccaggcctgccttacaagagatcctgaaggaagcactaaatatggaaagg
aaaaacgggtaccagccactgcaaaaaacataccaaattgtaaagaccattgatgctagg
aagaaactgcatcaactaattggcaaaataaccagctaa

>gi568815595f:115576024_115820879|GENSCAN_predicted_peptide_8|204_aa
MQETMLAIPANLYRICACSSNDNPQNLLKLIGNFSKVSGYKINVQKSQAFLYTNNRQTES
QIMSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLNEIKEDTNKWKNIPCSWVGRIN
IVKMAMVTKVIYRFNAIPVKLPMTFFTELEKTTLKFIWNQKRACIDKSILSQKNKAGGIM
LPDFKVYYKATVTKKHGTATKTEI

>gi568815595f:115576024_115820879|GENSCAN_predicted_CDS_8|615_bp
atgcaggagacaatgctagctattcctgcgaacctctacaggatctgtgcctgctcttca
aatgacaacccccaaaatctccttaagctgataggcaacttcagcaaagtctcaggatac
aaaatcaatgtgcaaaaatcacaagcattcttatacaccaataacagacaaacagagagc
caaatcatgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatc
caacttacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaatgaa
ataaaagaggatacaaacaaatggaagaacattccatgctcatgggtaggaaggatcaat
atcgtgaaaatggccatggtgaccaaggtaatttatagattcaatgccatccccgtcaag
ctaccaatgactttcttcacagaattggaaaaaactactttaaagttcatatggaaccaa
aaaagagcctgcattgacaagtcaatcctaagccaaaagaacaaagctggaggcatcatg
ctacctgacttcaaagtatactacaaggctacagtaaccaaaaagcacggtactgctacc
aaaacagagatatag

>gi568815595f:115576024_115820879|GENSCAN_predicted_peptide_9|219_aa
MKRNEKSLQEIWDYVKRPNICLIGVPESDWENGIKLENTLQDIIQENFPNLVRQANIQIQ
EIQRTSQKYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKEKPIRLPADLSAETL
QARREWGPIFNILKEKNFQPRISYPTKLSFISKGEIKSFTDKQMLRHFVTTRPALQELLK
EALNMERKNGYQPLQKTYQIVKTIDARKKLHQLTGKINS

>gi568815595f:115576024_115820879|GENSCAN_predicted_CDS_9|660_bp
atgaaaaggaatgaaaaaagcctccaagaaatatgggactatgtgaaaagaccaaacata
tgtttaattggtgtacctgaaagtgactgggagaatggaatcaagttggaaaacactctt
caggatattatccaggagaacttccccaatctagtaagacaggccaacattcaaattcag
gaaatacagagaacatcacaaaaatactcctcgagaagagcaaccccaagacacataatt
gtcagattcaccaaggttgaaatgaaggaaaaaatgttaagggcagctagagagaaaggt
cgggttacccacaaggagaagcccatcagactaccagcagatctctcagcagaaacccta
caagccagaagagagtgggggccaatatttaacattctcaaagaaaagaattttcagccc
agaatttcatatccaaccaaactaagcttcataagcaaaggagaaataaaatcctttaca
gacaagcaaatgctgagacattttgtcaccaccaggcctgccttacaagagctcctgaag
gaagcactaaatatggaaaggaaaaatgggtaccagccactgcaaaaaacataccaaatt
gtaaagaccattgatgctaggaagaaactgcatcaactaacgggcaaaataaacagctaa

>gi568815595f:115576024_115820879|GENSCAN_predicted_peptide_10|43_aa
MKRAQRMKAQKQSDASKLEGPEKENLQRKAFEKKFGKGPDLQS

>gi568815595f:115576024_115820879|GENSCAN_predicted_CDS_10|132_bp
atgaaaagagcacagcgcatgaaggcacaaaaacagtcagatgcttcaaagttagaagga
ccagaaaaggaaaatctgcaaaggaaagcctttgaaaagaaatttggcaaagggcctgat
ctacaaagctga

>gi568815595f:115576024_115820879|GENSCAN_predicted_peptide_11|611_aa
XPHPHPPNCVHIGKTKVAAGNTDGHSRLIWVSSNLSSAHGLDLPLNLSRAGPHIPPSPII
RTEWGVTQNITVNESAYYRWETKETCFIRGPKTPVPVTDWEGSLPLVFNHCRDTSVIIHP
RFKGVRPRRDACLGPSPLAASPAFLGKGQAELGPNSSSASAPPPYNLFIASPPHTWSGLQ
FRSVTSPPPPAQQFTLKKVAGAKGIVKRLKTDTARSPWKTPRPSRTPSFRKAERTKGLLK
IHLTKLSHQLKKDWTILLPLSLLRIQACPRNATRLATGQLGYPFISQSYVLVNGFQTVED
LCEAADLRVSVADLRVSVTALKVARLELFVPPGGLVVSLASAVKLQTFAVLQLIKAKRWD
WGTLEQGAALIGEARDAQEPTEGVGGSGMAGCRSRDLPRGKAAKARREIERSAGLTIKKE
RCIRNGYSKEKMKLIVVSHGLHVNDLQHKLTLFTKETYTYLARDSEKQKQGYLAGLEGAH
ANRVNQQISDNLAIVFGQKIQGHLSTTGQLLMAGQEGKLGQLLFLGISGWTIQLNDVYCL
RILNNNDSESDLEVMVGRKFSGSRQSEVANLGCLTQEEREHPGKLCLGKCAPLQTFSATK
MDSCDYITEIT

>gi568815595f:115576024_115820879|GENSCAN_predicted_CDS_11|1836_bp
nacccacacccacatcccccaaattgtgtccacattgggaaaactaaggtggcagcagga
aacacggatggccattccaggttaatctgggtgagttcaaatctcagttctgctcatggt
ttggacctgcctctcaacctctctagggcaggaccccatattcctcctagtcccatcatc
agaaccgagtggggagtcactcagaatatcactgtaaatgaaagtgcctactatcgatgg
gagacaaaggagacatgttttatccgtggacccaaaactccggtgccggtcacggactgg
gaaggcagccttcccttggtgtttaatcactgcagggacacctctgtgattattcaccca
cgtttcaaaggtgtcagaccacgcagggacgcctgccttggtccttcacccttagcggca
agtcctgcttttctggggaaggggcaagccgagctaggtcccaattcttcctcagcctct
gctcctccaccctataatctttttatcgcctcccctcctcacacctggtccggcttacag
tttcgttcggtgactagccctcccccacctgcccagcaatttactcttaaaaaggtggct
ggagccaaaggcatagtcaagcggctgaagactgacactgcccgatcgccttggaagacc
cctagaccatcacggacgccgagcttcagaaaagcagaacggactaaaggtcttttaaaa
atacacctcaccaagctcagccaccaacttaaaaaggactggacaatacttttaccactt
tcccttctcagaattcaggcctgtcctcggaatgctacaagactggctactggccaattg
ggatatccttttatcagtcaaagctatgtcctggtcaatggatttcaaactgttgaggat
ctatgtgaagctgcagaccttcgagtgagtgttgcagaccttcgagtgagtgttacagct
cttaaggtggcgcgtctggagttgttcgttcctcccggtgggctcgtggtctcgctggct
tcagcagtgaagctgcagaccttcgcggtgttacagctcataaaagcaaaaagatgggac
tggggcaccttggagcagggggcggcgctcatcggggaggctcgggacgcacaggagccc
acggagggggtgggaggctcaggcatggcgggctgcaggtccagagacctgccccgcggg
aaggcagctaaggcccggcgagaaatcgagcgcagcgccgggctgacgatcaagaaggaa
agatgcatacgaaatggatacagcaaagaaaaaatgaaactcatagttgtttctcatggc
ctccatgtaaatgacttgcagcataaactgacgcttttcaccaaggaaacatacacatac
ctagccagggattcagagaagcagaagcaggggtatctagcaggacttgaaggagcccat
gccaacagggtgaaccagcagatcagtgacaacttagccatagtctttggacaaaagatt
caaggccatctctccactactggacagctgcttatggcaggtcaagaaggaaagctgggc
cagcttcttttcctgggaatttcgggttggacaattcaactgaatgatgtttattgtctg
agaatactgaacaataatgatagtgaaagcgaccttgaggtgatggtgggccgcaaattc
agtgggagccggcagtcagaagtggccaatttgggatgcttgacacaggaggagagggag
cacccagggaagttgtgtctgggaaagtgtgctcccctccagacctttagtgccactaaa
atggactcatgcgattacatcactgaaataacttga