Result of FASTA (ccds) for pF1KB8698
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8698, 585 aa
  1>>>pF1KB8698 585 - 585 aa - 585 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.8111+/-0.00113; mu= -15.1912+/- 0.068
 mean_var=407.4791+/-83.252, 0's: 0 Z-trim(114.0): 44  B-trim: 170 in 1/52
 Lambda= 0.063536
 statistics sampled from 14563 (14601) to 14563 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.449), width:  16
 Scan time:  4.090

The best scores are:                                      opt bits E(32554)
CCDS75747.1 YTHDF3 gene_id:253943|Hs108|chr8       ( 585) 4014 382.2 9.7e-106
CCDS75748.1 YTHDF3 gene_id:253943|Hs108|chr8       ( 588) 3903 372.0 1.1e-102
CCDS75749.1 YTHDF3 gene_id:253943|Hs108|chr8       ( 534) 3671 350.8 2.6e-96
CCDS41296.1 YTHDF2 gene_id:51441|Hs108|chr1        ( 579) 2680 259.9 6.2e-69
CCDS53287.1 YTHDF2 gene_id:51441|Hs108|chr1        ( 529) 2453 239.1 1.1e-62
CCDS13511.1 YTHDF1 gene_id:54915|Hs108|chr20       ( 559) 1472 149.2 1.3e-35


>>CCDS75747.1 YTHDF3 gene_id:253943|Hs108|chr8            (585 aa)
 initn: 4014 init1: 4014 opt: 4014  Z-score: 2011.8  bits: 382.2 E(32554): 9.7e-106
Smith-Waterman score: 4014; 99.7% identity (99.7% similar) in 585 aa overlap (1-585:1-585)

               10        20        30        40        50        60
pF1KB8 MSATSVDQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMSDPYMPSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MSATSVDQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMSDPYMPSY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 YAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 YAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFLG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 QHGFNFFPGNADFSTWGTRGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLSK
       :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS75 QHGFNFFPGNADFSTWGTSGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLSK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VPGISSIEQGMTGLKIGGDLTAAVTKTVGTALSSSGMTSIATNSVPPVSSAAPKPTSWAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VPGISSIEQGMTGLKIGGDLTAAVTKTVGTALSSSGMTSIATNSVPPVSSAAPKPTSWAA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 IARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLPPQTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 IARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLPPQTI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 IQQPQPLIQPPPLVQSQLPQQQPQPPQPQQQQGPQPQAQPHQVQPQQQQLQNRWVAPRNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 IQQPQPLIQPPPLVQSQLPQQQPQPPQPQQQQGPQPQAQPHQVQPQQQQLQNRWVAPRNR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 GAGFNQNNGAGSENFGLGVVSVSASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGRVFI
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
CCDS75 GAGFNQNNGAGSENFGLGVVPVSASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGRVFI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 IKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGVAEMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 IKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGVAEMK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 SVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPL
              490       500       510       520       530       540

              550       560       570       580     
pF1KB8 EKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRERNRNKQ
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRERNRNKQ
              550       560       570       580     

>>CCDS75748.1 YTHDF3 gene_id:253943|Hs108|chr8            (588 aa)
 initn: 3903 init1: 3903 opt: 3903  Z-score: 1956.8  bits: 372.0 E(32554): 1.1e-102
Smith-Waterman score: 3903; 99.6% identity (99.6% similar) in 568 aa overlap (18-585:21-588)

                  10        20        30        40        50       
pF1KB8    MSATSVDQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMSDPYM
                           ::::::::::::::::::::::::::::::::::::::::
CCDS75 MFYLDLTLFHRAEETGEESFSVQNGSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMSDPYM
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB8 PSYYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PSYYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPP
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KB8 FLGQHGFNFFPGNADFSTWGTRGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDT
       ::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::
CCDS75 FLGQHGFNFFPGNADFSTWGTSGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDT
              130       140       150       160       170       180

       180       190       200       210       220       230       
pF1KB8 LSKVPGISSIEQGMTGLKIGGDLTAAVTKTVGTALSSSGMTSIATNSVPPVSSAAPKPTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LSKVPGISSIEQGMTGLKIGGDLTAAVTKTVGTALSSSGMTSIATNSVPPVSSAAPKPTS
              190       200       210       220       230       240

       240       250       260       270       280       290       
pF1KB8 WAAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 WAAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLPP
              250       260       270       280       290       300

       300       310       320       330       340       350       
pF1KB8 QTIIQQPQPLIQPPPLVQSQLPQQQPQPPQPQQQQGPQPQAQPHQVQPQQQQLQNRWVAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QTIIQQPQPLIQPPPLVQSQLPQQQPQPPQPQQQQGPQPQAQPHQVQPQQQQLQNRWVAP
              310       320       330       340       350       360

       360       370       380       390       400       410       
pF1KB8 RNRGAGFNQNNGAGSENFGLGVVSVSASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGR
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
CCDS75 RNRGAGFNQNNGAGSENFGLGVVPVSASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGR
              370       380       390       400       410       420

       420       430       440       450       460       470       
pF1KB8 VFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGVA
              430       440       450       460       470       480

       480       490       500       510       520       530       
pF1KB8 EMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQE
              490       500       510       520       530       540

       540       550       560       570       580     
pF1KB8 VPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRERNRNKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRERNRNKQ
              550       560       570       580        

>>CCDS75749.1 YTHDF3 gene_id:253943|Hs108|chr8            (534 aa)
 initn: 3671 init1: 3671 opt: 3671  Z-score: 1842.5  bits: 350.8 E(32554): 2.6e-96
Smith-Waterman score: 3671; 99.6% identity (99.6% similar) in 534 aa overlap (52-585:1-534)

              30        40        50        60        70        80 
pF1KB8 GSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMSDPYMPSYYAPSIGFPYSLGEAAWSTAGD
                                     ::::::::::::::::::::::::::::::
CCDS75                               MSDPYMPSYYAPSIGFPYSLGEAAWSTAGD
                                             10        20        30

              90       100       110       120       130       140 
pF1KB8 QPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFLGQHGFNFFPGNADFSTWGTRGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
CCDS75 QPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFLGQHGFNFFPGNADFSTWGTSGS
               40        50        60        70        80        90

             150       160       170       180       190       200 
pF1KB8 QGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLSKVPGISSIEQGMTGLKIGGDLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLSKVPGISSIEQGMTGLKIGGDLT
              100       110       120       130       140       150

             210       220       230       240       250       260 
pF1KB8 AAVTKTVGTALSSSGMTSIATNSVPPVSSAAPKPTSWAAIARKPAKPQPKLKPKGNVGIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AAVTKTVGTALSSSGMTSIATNSVPPVSSAAPKPTSWAAIARKPAKPQPKLKPKGNVGIG
              160       170       180       190       200       210

             270       280       290       300       310       320 
pF1KB8 GSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLPPQTIIQQPQPLIQPPPLVQSQLPQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLPPQTIIQQPQPLIQPPPLVQSQLPQQ
              220       230       240       250       260       270

             330       340       350       360       370       380 
pF1KB8 QPQPPQPQQQQGPQPQAQPHQVQPQQQQLQNRWVAPRNRGAGFNQNNGAGSENFGLGVVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
CCDS75 QPQPPQPQQQQGPQPQAQPHQVQPQQQQLQNRWVAPRNRGAGFNQNNGAGSENFGLGVVP
              280       290       300       310       320       330

             390       400       410       420       430       440 
pF1KB8 VSASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VSASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCST
              340       350       360       370       380       390

             450       460       470       480       490       500 
pF1KB8 EHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKF
              400       410       420       430       440       450

             510       520       530       540       550       560 
pF1KB8 EVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFD
              460       470       480       490       500       510

             570       580     
pF1KB8 DFAHYEKRQEEEEAMRRERNRNKQ
       ::::::::::::::::::::::::
CCDS75 DFAHYEKRQEEEEAMRRERNRNKQ
              520       530    

>>CCDS41296.1 YTHDF2 gene_id:51441|Hs108|chr1             (579 aa)
 initn: 1976 init1: 1198 opt: 2680  Z-score: 1351.1  bits: 259.9 E(32554): 6.2e-69
Smith-Waterman score: 2699; 67.6% identity (86.8% similar) in 599 aa overlap (1-584:1-579)

                10        20        30        40        50         
pF1KB8 MSATSV-DQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMSDPYMPS
       :::.:. .:::::::::  :::::.::::..:::::::::: :.  .:.:  ::: :.::
CCDS41 MSASSLLEQRPKGQGNK--VQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPS
               10          20        30        40        50        

      60        70        80        90       100       110         
pF1KB8 YYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFL
       ::.::::: ::::::::::.::  :::::.:::.:::: :..::..:.::::::.:: ::
CCDS41 YYSPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTP-FL
       60        70        80        90       100       110        

     120       130       140       150       160       170         
pF1KB8 GQHGFNFFPGNADFSTWGTRGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLS
       :::::::::.. :::.::. .:::::::::.:::.:.: ::::: :. :::..:.:.::.
CCDS41 GQHGFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLN
       120       130       140       150       160       170       

     180       190        200       210         220       230      
pF1KB8 KVPGISSIEQGMTGLKIGG-DLTAAVTKTVGTALSSSGMTS--IATNSVPPVSSAAPKPT
       :.::...:.:::..::.:. .... : :.::.:..:...::  .:.::.::.. : :::.
CCDS41 KAPGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPA
       180       190       200       210       220       230       

        240       250       260       270       280       290      
pF1KB8 SWAAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLP
       ::: :: :::: ::::: :.  ::.::..:::::::::.:::::.:: :.::: .: .. 
CCDS41 SWADIASKPAKQQPKLKTKN--GIAGSSLPPPPIKHNMDIGTWDNKGPVAKAP-SQALV-
       240       250         260       270       280        290    

        300           310           320        330       340       
pF1KB8 PQTIIQ----QPQPLIQP----PPLVQSQLPQQ-QPQPPQPQQQQGPQPQAQPHQVQPQQ
        :.: :    .:::. :     ::..:... :: :: :: :     :::     :.. ::
CCDS41 -QNIGQPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPP-----PQPA----QLSVQQ
            300       310       320       330                340   

       350        360       370       380       390       400      
pF1KB8 QQLQ-NRWVAPRNRGAGFNQNNGAGSENFGLGVVSVSASPSSVEVHPVLEKLKAINNYNP
       :  : .:::::::::.::..:   : .. :.:  ..... .  : :::::::..::::::
CCDS41 QAAQPTRWVAPRNRGSGFGHN---GVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNP
           350       360          370       380       390       400

        410       420       430       440       450       460      
pF1KB8 KDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFS
       ::::::::.::::::::::::::::::::.::::::::::::::::::.:::::.:::::
CCDS41 KDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFS
              410       420       430       440       450       460

        470       480       490       500       510       520      
pF1KB8 VNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDN
       :::::::::::::::.::::. :::::::::::.:.:.:::::::::.::::::::::.:
CCDS41 VNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNEN
              470       480       490       500       510       520

        530       540       550       560       570       580      
pF1KB8 KPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRERN-RNKQ
       :::::::::::::::::::::::::..::::::::::.::::::::::....::. :.: 
CCDS41 KPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 
              530       540       550       560       570          

>>CCDS53287.1 YTHDF2 gene_id:51441|Hs108|chr1             (529 aa)
 initn: 1198 init1: 1198 opt: 2453  Z-score: 1239.2  bits: 239.1 E(32554): 1.1e-62
Smith-Waterman score: 2472; 67.6% identity (87.0% similar) in 547 aa overlap (52-584:1-529)

              30        40        50        60        70        80 
pF1KB8 GSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMSDPYMPSYYAPSIGFPYSLGEAAWSTAGD
                                     ::: :.::::.::::: ::::::::::.::
CCDS53                               MSDSYLPSYYSPSIGFSYSLGEAAWSTGGD
                                             10        20        30

              90       100       110       120       130       140 
pF1KB8 QPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFLGQHGFNFFPGNADFSTWGTRGS
         :::::.:::.:::: :..::..:.::::::.:: :::::::::::.. :::.::. .:
CCDS53 TAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTP-FLGQHGFNFFPSGIDFSAWGNNSS
               40        50        60         70        80         

             150       160       170       180       190        200
pF1KB8 QGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLSKVPGISSIEQGMTGLKIGG-DL
       ::::::::.:::.:.: ::::: :. :::..:.:.::.:.::...:.:::..::.:. ..
CCDS53 QGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLNKAPGMNTIDQGMAALKLGSTEV
      90       100       110       120       130       140         

              210         220       230       240       250        
pF1KB8 TAAVTKTVGTALSSSGMTS--IATNSVPPVSSAAPKPTSWAAIARKPAKPQPKLKPKGNV
       .. : :.::.:..:...::  .:.::.::.. : :::.::: :: :::: ::::: :.  
CCDS53 ASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWADIASKPAKQQPKLKTKN--
     150       160       170       180       190       200         

      260       270       280       290       300           310    
pF1KB8 GIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLPPQTIIQ----QPQPLIQP----
       ::.::..:::::::::.:::::.:: :.::: .: ..  :.: :    .:::. :     
CCDS53 GIAGSSLPPPPIKHNMDIGTWDNKGPVAKAP-SQALV--QNIGQPTQGSPQPVGQQANNS
       210       220       230        240         250       260    

              320        330       340       350        360        
pF1KB8 PPLVQSQLPQQ-QPQPPQPQQQQGPQPQAQPHQVQPQQQQLQ-NRWVAPRNRGAGFNQNN
       ::..:... :: :: :: :     :::     :.. :::  : .:::::::::.::..: 
CCDS53 PPVAQASVGQQTQPLPPPP-----PQPA----QLSVQQQAAQPTRWVAPRNRGSGFGHN-
          270       280                290       300       310     

      370       380       390       400       410       420        
pF1KB8 GAGSENFGLGVVSVSASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGRVFIIKSYSEDD
         : .. :.:  ..... .  : :::::::..::::::::::::::.:::::::::::::
CCDS53 --GVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDD
            320       330       340       350       360       370  

      430       440       450       460       470       480        
pF1KB8 IHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGVAEMKSVVDYNAY
       :::::::.::::::::::::::::::.:::::.::::::::::::::::::::.::::. 
CCDS53 IHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTC
            380       390       400       410       420       430  

      490       500       510       520       530       540        
pF1KB8 AGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLK
       :::::::::::.:.:.:::::::::.::::::::::.:::::::::::::::::::::::
CCDS53 AGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLK
            440       450       460       470       480       490  

      550       560       570       580      
pF1KB8 IIATFKHTTSIFDDFAHYEKRQEEEEAMRRERN-RNKQ
       :::..::::::::::.::::::::::....::. :.: 
CCDS53 IIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 
            500       510       520          

>>CCDS13511.1 YTHDF1 gene_id:54915|Hs108|chr20            (559 aa)
 initn: 1775 init1: 1214 opt: 1472  Z-score: 752.8  bits: 149.2 E(32554): 1.3e-35
Smith-Waterman score: 2659; 68.5% identity (84.7% similar) in 588 aa overlap (1-585:1-559)

                10        20        30        40        50         
pF1KB8 MSATSVD-QRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMSDPYMPS
       ::::::: :: ::: ::  :::::.::::.:.:.::::::..:.::::::: :::::. :
CCDS13 MSATSVDTQRTKGQDNK--VQNGSLHQKDTVHDNDFEPYLTGQSNQSNSYPSMSDPYLSS
               10          20        30        40        50        

      60        70        80        90       100       110         
pF1KB8 YYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFL
       :: :::::::::.:: :::::: :.::::::::.:::.::.. :.::.:::.:::.   .
CCDS13 YYPPSIGFPYSLNEAPWSTAGDPPIPYLTTYGQLSNGDHHFMHDAVFGQPGGLGNN---I
       60        70        80        90       100       110        

     120       130       140       150       160       170         
pF1KB8 GQHGFNFFPGNADFSTWGTRGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLS
        :: ::::: :  ::.::: :::::.::::::.::: ::::::: ...::: :: .::::
CCDS13 YQHRFNFFPENPAFSAWGTSGSQGQQTQSSAYGSSYTYPPSSLGGTVVDGQPGFHSDTLS
         120       130       140       150       160       170     

     180       190       200       210       220        230        
pF1KB8 KVPGISSIEQGMTGLKIGGDLTAAVTKTVGTALSSSGMTSIAT-NSVPPVSSAAPKPTSW
       :.::..:.::::.::::: :......::::...:: ..:.. . :.   :.  . :::::
CCDS13 KAPGMNSLEQGMVGLKIG-DVSSSAVKTVGSVVSSVALTGVLSGNGGTNVNMPVSKPTSW
         180       190        200       210       220       230    

      240       250       260       270       280       290        
pF1KB8 AAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLPPQ
       :::: ::::::::.: :..  .::. .:::::::::.:::::.:: : :::  : .  ::
CCDS13 AAIASKPAKPQPKMKTKSGPVMGGG-LPPPPIKHNMDIGTWDNKGPVPKAPVPQQAPSPQ
          240       250        260       270       280       290   

      300       310       320       330       340       350        
pF1KB8 TIIQQPQPLIQPPPLVQSQLPQQQPQPPQPQQQQGPQPQAQPHQVQPQQQQLQNRWVAPR
       .   ::: . ::       :: : :   ::: :.   ::  :          :.::::::
CCDS13 AA-PQPQQVAQP-------LPAQPPALAQPQYQS---PQQPP----------QTRWVAPR
            300              310          320                 330  

      360       370       380       390       400       410        
pF1KB8 NRGAGFNQNNGAGSENFGLGVVSVSASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGRV
       ::.:.:.:..::::.. . : :. ...:: :: ::::::::: ..::::.:.::::.:::
CCDS13 NRNAAFGQSGGAGSDSNSPGNVQPNSAPS-VESHPVLEKLKAAHSYNPKEFEWNLKSGRV
            340       350       360        370       380       390 

      420       430       440       450       460       470        
pF1KB8 FIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGVAE
       :::::::::::::::::::::::::::::::.:.: ...:::.:::::::::::::::::
CCDS13 FIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKGPVYLLFSVNGSGHFCGVAE
             400       410       420       430       440       450 

      480       490       500       510       520       530        
pF1KB8 MKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEV
       ::: :::.. :::::::::::::.:.::::::::::::::::::::::::::::::::::
CCDS13 MKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEV
             460       470       480       490       500       510 

      540       550       560       570       580      
pF1KB8 PLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRER-NRNKQ
       ::::::::::::...:::::::::::::::::::::..:.:: .::::
CCDS13 PLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQEEEEVVRKERQSRNKQ
             520       530       540       550         




585 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:43:08 2016 done: Fri Nov  4 14:43:09 2016
 Total Scan time:  4.090 Total Display time:  0.080

Function used was FASTA [36.3.4 Apr, 2011]
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