Result of FASTA (omim) for pF1KB8694
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8694, 455 aa
  1>>>pF1KB8694 455 - 455 aa - 455 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4839+/-0.000462; mu= 16.8742+/- 0.028
 mean_var=75.2866+/-14.709, 0's: 0 Z-trim(110.3): 163  B-trim: 18 in 1/53
 Lambda= 0.147814
 statistics sampled from 18442 (18626) to 18442 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.578), E-opt: 0.2 (0.218), width:  16
 Scan time:  7.770

The best scores are:                                      opt bits E(85289)
NP_057439 (OMIM: 615428) probable ATP-dependent RN ( 455) 2918 632.2 8.6e-181
NP_957518 (OMIM: 615428) probable ATP-dependent RN ( 406) 1595 350.0 6.7e-96
NP_060365 (OMIM: 616621) probable ATP-dependent RN ( 796)  913 204.8   7e-52
NP_004389 (OMIM: 601235) probable ATP-dependent RN ( 875)  768 173.9 1.5e-42
NP_055555 (OMIM: 268305,608546) eukaryotic initiat ( 411)  759 171.8 3.1e-42
NP_006764 (OMIM: 606355) ATP-dependent RNA helicas ( 670)  758 171.7 5.4e-42
XP_016879601 (OMIM: 613369) PREDICTED: ATP-depende ( 775)  753 170.7 1.3e-41
XP_016879600 (OMIM: 613369) PREDICTED: ATP-depende ( 938)  753 170.7 1.5e-41
XP_006721720 (OMIM: 613369) PREDICTED: ATP-depende ( 938)  753 170.7 1.5e-41
NP_987095 (OMIM: 613369) ATP-dependent RNA helicas ( 938)  753 170.7 1.5e-41
NP_031398 (OMIM: 613369) ATP-dependent RNA helicas ( 938)  753 170.7 1.5e-41
XP_011522561 (OMIM: 613369) PREDICTED: ATP-depende ( 674)  745 168.9 3.7e-41
XP_005271474 (OMIM: 600326) PREDICTED: probable AT ( 483)  741 168.0 5.1e-41
NP_004388 (OMIM: 600326) probable ATP-dependent RN ( 483)  741 168.0 5.1e-41
NP_001244120 (OMIM: 600326) probable ATP-dependent ( 483)  741 168.0 5.1e-41
NP_006377 (OMIM: 608469) probable ATP-dependent RN ( 729)  742 168.3 6.2e-41
NP_001091974 (OMIM: 608469) probable ATP-dependent ( 731)  742 168.3 6.2e-41
NP_542165 (OMIM: 142560) spliceosome RNA helicase  ( 428)  731 165.8   2e-40
NP_004631 (OMIM: 142560) spliceosome RNA helicase  ( 428)  731 165.8   2e-40
NP_001958 (OMIM: 601102) eukaryotic initiation fac ( 407)  718 163.0 1.3e-39
NP_004387 (OMIM: 180630) probable ATP-dependent RN ( 614)  720 163.6 1.4e-39
NP_001307524 (OMIM: 180630) probable ATP-dependent ( 614)  720 163.6 1.4e-39
NP_001307525 (OMIM: 180630) probable ATP-dependent ( 614)  720 163.6 1.4e-39
NP_001307526 (OMIM: 180630) probable ATP-dependent ( 614)  720 163.6 1.4e-39
NP_076977 (OMIM: 611665) ATP-dependent RNA helicas ( 881)  715 162.6 3.9e-39
NP_001104792 (OMIM: 611665) ATP-dependent RNA heli ( 882)  715 162.6 3.9e-39
XP_016866492 (OMIM: 606286) PREDICTED: probable AT ( 439)  704 160.1 1.1e-38
XP_011534229 (OMIM: 606286) PREDICTED: probable AT ( 529)  704 160.1 1.3e-38
XP_011534230 (OMIM: 606286) PREDICTED: probable AT ( 529)  704 160.1 1.3e-38
XP_011534228 (OMIM: 606286) PREDICTED: probable AT ( 604)  704 160.1 1.5e-38
NP_061135 (OMIM: 606286) probable ATP-dependent RN ( 648)  704 160.2 1.5e-38
NP_001407 (OMIM: 602641) eukaryotic initiation fac ( 406)  698 158.7 2.6e-38
XP_016857921 (OMIM: 174300,615464) PREDICTED: prob ( 619)  698 158.9 3.6e-38
XP_011508337 (OMIM: 174300,615464) PREDICTED: prob ( 619)  698 158.9 3.6e-38
NP_001026895 (OMIM: 174300,615464) probable ATP-de ( 619)  698 158.9 3.6e-38
XP_016857920 (OMIM: 174300,615464) PREDICTED: prob ( 619)  698 158.9 3.6e-38
NP_001307110 (OMIM: 174300,615464) probable ATP-de ( 567)  615 141.1 7.2e-33
XP_016884803 (OMIM: 300160,300958) PREDICTED: ATP- ( 475)  614 140.9 7.2e-33
XP_006711625 (OMIM: 174300,615464) PREDICTED: prob ( 557)  614 140.9 8.2e-33
NP_001289481 (OMIM: 400010,415000) ATP-dependent R ( 657)  614 141.0 9.4e-33
NP_001116137 (OMIM: 400010,415000) ATP-dependent R ( 660)  614 141.0 9.4e-33
NP_004651 (OMIM: 400010,415000) ATP-dependent RNA  ( 660)  614 141.0 9.4e-33
NP_001180345 (OMIM: 300160,300958) ATP-dependent R ( 661)  614 141.0 9.4e-33
XP_016884802 (OMIM: 300160,300958) PREDICTED: ATP- ( 476)  608 139.6 1.7e-32
NP_001180346 (OMIM: 300160,300958) ATP-dependent R ( 646)  608 139.7 2.2e-32
NP_001347 (OMIM: 300160,300958) ATP-dependent RNA  ( 662)  608 139.7 2.3e-32
XP_011542194 (OMIM: 300160,300958) PREDICTED: ATP- ( 598)  607 139.4 2.4e-32
NP_001278405 (OMIM: 612500) probable ATP-dependent ( 491)  591 136.0 2.2e-31
XP_011522534 (OMIM: 612500) PREDICTED: probable AT ( 581)  591 136.0 2.5e-31
NP_008941 (OMIM: 612500) probable ATP-dependent RN ( 599)  591 136.0 2.6e-31


>>NP_057439 (OMIM: 615428) probable ATP-dependent RNA he  (455 aa)
 initn: 2918 init1: 2918 opt: 2918  Z-score: 3366.7  bits: 632.2 E(85289): 8.6e-181
Smith-Waterman score: 2918; 99.8% identity (99.8% similar) in 455 aa overlap (1-455:1-455)

               10        20        30        40        50        60
pF1KB8 MAAPEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MAAPEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GRDIIGLAETGPGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIG
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 YYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 YYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 KRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 KRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 GKAITFVTQYDVELFQRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHGEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GKAITFVTQYDVELFQRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHGEK
              370       380       390       400       410       420

              430       440       450     
pF1KB8 KKRSREDAGDNDDTEGAIGVRNKVAGGKMKKRKGR
       :::::::::::::::::::::::::::::::::::
NP_057 KKRSREDAGDNDDTEGAIGVRNKVAGGKMKKRKGR
              430       440       450     

>>NP_957518 (OMIM: 615428) probable ATP-dependent RNA he  (406 aa)
 initn: 1587 init1: 1587 opt: 1595  Z-score: 1842.7  bits: 350.0 E(85289): 6.7e-96
Smith-Waterman score: 2487; 89.0% identity (89.0% similar) in 455 aa overlap (1-455:1-406)

               10        20        30        40        50        60
pF1KB8 MAAPEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_957 MAAPEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GRDIIGLAETGPGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIG
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
NP_957 GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_957 VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_957 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 YYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQS
       ::::::::::                                                 :
NP_957 YYIFIPSKFK-------------------------------------------------S
              250                                                  

              310       320       330       340       350       360
pF1KB8 KRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_957 KRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS
             260       270       280       290       300       310 

              370       380       390       400       410       420
pF1KB8 GKAITFVTQYDVELFQRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHGEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_957 GKAITFVTQYDVELFQRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHGEK
             320       330       340       350       360       370 

              430       440       450     
pF1KB8 KKRSREDAGDNDDTEGAIGVRNKVAGGKMKKRKGR
       :::::::::::::::::::::::::::::::::::
NP_957 KKRSREDAGDNDDTEGAIGVRNKVAGGKMKKRKGR
             380       390       400      

>>NP_060365 (OMIM: 616621) probable ATP-dependent RNA he  (796 aa)
 initn: 908 init1: 401 opt: 913  Z-score: 1052.4  bits: 204.8 E(85289): 7e-52
Smith-Waterman score: 913; 37.2% identity (69.3% similar) in 417 aa overlap (21-431:215-631)

                         10        20        30        40        50
pF1KB8           MAAPEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKI
                                     .:. .:.:....  : .:   .:. .:: :
NP_060 KADTLKVKDRKKKKKKGQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPI
          190       200       210       220       230       240    

               60        70        80        90          100       
pF1KB8 QIEAIPLALQGRDIIGLAETGPGKTGAFALPILNALLETPQR---LFALVLTPTRELAFQ
       :   ::..: :.:: . : :: :::.:::::.:. :.  :..     .:::.:::::..:
NP_060 QKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQ
          250       260       270       280       290       300    

       110       120       130       140       150       160       
pF1KB8 ISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRA
       .    . :..  .. . . :::.:  ::  ::   : :.:::::::::::.:  .:.: .
NP_060 VHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSS
          310       320       330       340       350       360    

       170       180       190       200       210       220       
pF1KB8 LKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCA
       .. :..:::::.:.  :: .. .:...  . :.:.::::::: .:. :  ..:::::.  
NP_060 IEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIF
          370       380       390       400       410       420    

       230       240        250         260       270       280    
pF1KB8 VSSKYQTVEKLQQYYIFI-PSKFKDTYLVY--ILNELAGNSFMIFCSTCNNTQRTALLLR
       :.:. ...  :.: .: : :..  :   .   .:..   .  :.: .: ....:  .:: 
NP_060 VNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLG
          430       440       450       460       470       480    

          290       300       310       320       330       340    
pF1KB8 NLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHS
        .:. .  :::..::..:: .: .:: .  .::.:::::.:::::  : .:.:: .:.  
NP_060 LMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTI
          490       500       510       520       530       540    

          350       360       370       380       390       400    
pF1KB8 KDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPGFPTQDDEVMMLTERVA
       : :.:::::::::::.:.....: . . .....: .     . .    .: .. . ... 
NP_060 KHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDVILKFRDKIE
          550       560       570       580       590       600    

          410       420       430       440       450              
pF1KB8 EAQRFARMELREHGEKKKRSREDAGDNDDTEGAIGVRNKVAGGKMKKRKGR         
       . .. .   :. ..:.:. .. .:  :                                 
NP_060 KMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEKI
          610       620       630       640       650       660    

>>NP_004389 (OMIM: 601235) probable ATP-dependent RNA he  (875 aa)
 initn: 709 init1: 264 opt: 768  Z-score: 884.7  bits: 173.9 E(85289): 1.5e-42
Smith-Waterman score: 768; 33.9% identity (65.9% similar) in 416 aa overlap (18-425:63-469)

                            10        20        30        40       
pF1KB8              MAAPEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKP
                                     .. .:   :.:. ..    .. ..  .   
NP_004 KKKQLRKQLKKPEWQVERESISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLV
             40        50        60        70        80        90  

        50        60        70        80            90       100   
pF1KB8 TKIQIEAIPLALQGRDIIGLAETGPGKTGAFALPILNALLE----TPQRLFALVLTPTRE
       :.:: ..: :::::.:..: :.:: ::: :: .:.:.:: .    . . : .:...::::
NP_004 TEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRE
            100       110       120       130       140       150  

           110       120       130       140       150       160   
pF1KB8 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGF
       ::.:  : .. .:..   ....:.:: : ...     .. .:.. :::::..:...: .:
NP_004 LAYQTFEVLRKVGKNHDFSAGLIIGGKD-LKHEAERINNINILVCTPGRLLQHMDETVSF
            160       170       180        190       200       210 

           170       180       190       200       210       220   
pF1KB8 NLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNP
       .   :..::.:::::::.: :   .. ... .:. :.:.:::::.::.:. : : .::::
NP_004 HATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNP
             220       230       240       250       260       270 

             230       240       250       260       270       280 
pF1KB8 VKCAV--SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTAL
           :  ..::.:   :.: ::    . : . :  .:     .. ..: :.:...:    
NP_004 EYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKKKSIVFFSSCKEVQYLYR
             280       290       300       310       320       330 

               290       300       310       320       330         
pF1KB8 LLRNL--GFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFD
       ..  :  : . . :::...: .:.   :.:  :  ..:.:::.:.::::.: :. :..::
NP_004 VFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFD
             340       350       360       370       380       390 

     340       350       360       370       380       390         
pF1KB8 IPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPGFPTQDDEVMML
        :  .. ::::.:::::  ..:.:. ..   .  . :.   :. ::.:       :. . 
NP_004 CPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMVQQ---LLQKKVP-----VKEIKIN
             400       410       420          430            440   

     400       410       420       430       440       450         
pF1KB8 TERVAEAQRFARMELREHGEKKKRSREDAGDNDDTEGAIGVRNKVAGGKMKKRKGR    
        :.. ..:.  .  : .  . :.:..                                  
NP_004 PEKLIDVQKKLESILAQDQDLKERAQRCFVSYVRSVYLMKDKEVFDVSKLPIPEYALSLG
           450       460       470       480       490       500   

>>NP_055555 (OMIM: 268305,608546) eukaryotic initiation   (411 aa)
 initn: 639 init1: 531 opt: 759  Z-score: 879.1  bits: 171.8 E(85289): 3.1e-42
Smith-Waterman score: 759; 31.9% identity (68.4% similar) in 373 aa overlap (19-390:33-404)

                           10        20        30        40        
pF1KB8             MAAPEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPT
                                     : . : ::  .:. . : ..    :. ::.
NP_055 TTATMATSGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPS
             10        20        30        40        50        60  

       50        60        70        80        90       100        
pF1KB8 KIQIEAIPLALQGRDIIGLAETGPGKTGAFALPILNALLETPQRLFALVLTPTRELAFQI
        :: .::   ..:::.:. ...: :::..:.. .:. :    ..  ::.:.:::::: ::
NP_055 AIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQI
             70        80        90       100       110       120  

      110       120       130       140       150       160        
pF1KB8 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL
       .. . :::. ..::  . .:: .   .   :    :.. .::::..: ..  ...  ::.
NP_055 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR-RSLRTRAI
            130       140       150       160       170        180 

      170       180       190       200       210       220        
pF1KB8 KYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV
       :.::.::::..::  :. ..  . . .:   .. :.:::. ... ..    . .:..  :
NP_055 KMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILV
             190       200       210       220       230       240 

      230       240        250       260       270       280       
pF1KB8 SSKYQTVEKLQQYYIFIPSK-FKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLG
       .    :.: ..:... .  . .:   :  . . :. .. .:::.:  ...  .  .:. .
NP_055 KRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREAN
             250       260       270       280       290       300 

       290       300       310       320       330       340       
pF1KB8 FTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDY
       ::.  .::.: :..: . ...:.. :  .:..::: .::::.:.:....:.:.:.. . :
NP_055 FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELY
             310       320       330       340       350       360 

       350       360       370       380       390       400       
pF1KB8 IHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQ
       :::.::..: ::.: ::.:: . :..... ::.  . ..  .:                 
NP_055 IHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI          
             370       380       390       400       410           

       410       420       430       440       450     
pF1KB8 RFARMELREHGEKKKRSREDAGDNDDTEGAIGVRNKVAGGKMKKRKGR

>>NP_006764 (OMIM: 606355) ATP-dependent RNA helicase DD  (670 aa)
 initn: 778 init1: 356 opt: 758  Z-score: 874.9  bits: 171.7 E(85289): 5.4e-42
Smith-Waterman score: 760; 34.7% identity (64.8% similar) in 458 aa overlap (4-442:154-603)

                                          10           20        30
pF1KB8                            MAAPEEHDSPTEA-SQPI--VEEEETKTFKDLG
                                     :.. .. .:. : :.  .   :  .: .: 
NP_006 DTKKAKTENKGKSEEESAETTKETENNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLC
           130       140       150       160       170       180   

                 40        50         60        70        80       
pF1KB8 --VTDVLCEACDQLGWTKPTKIQIEAI-PLALQGRDIIGLAETGPGKTGAFALPILNALL
         :..   .:  ..:.:. :.:: ..: :: :.:::... :.:: ::: :: .: .. ..
NP_006 NLVNENTLKAIKEMGFTNMTEIQHKSIRPL-LEGRDLLAAAKTGSGKTLAFLIPAVELIV
           190       200       210        220       230       240  

           90        100       110       120       130       140   
pF1KB8 ET---PQR-LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKP
       .    :.    .:.:.::::::.:    .. : .      ..:.:: .  ...  :..  
NP_006 KLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGI
            250       260       270       280       290       300  

           150       160       170       180       190       200   
pF1KB8 HIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFL
       .::.::::::.::..:: ::  . :. ::.:::::::.. :: :. .:.:..:  :.:.:
NP_006 NIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTML
            310       320       330       340       350       360  

           210       220        230         240       250       260
pF1KB8 FSATMTKKVQKLQRAALKN-PVKCAVSSKYQ--TVEKLQQYYIFIPSKFKDTYLVYILNE
       ::::.:.::. : : .::. :.  .:..     ::. :.: :.  ::. .   :  .:..
NP_006 FSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKK
            370       380       390       400       410       420  

              270       280       290       300       310       320
pF1KB8 LAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT
          ...:.: :.: ...    ::  . . .. .::...:.::  .. .:     . :: :
NP_006 NRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCT
            430       440       450       460       470       480  

              330       340       350       360       370          
pF1KB8 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVEL-FQRIE
       :::.::::::.:: .:..: :   :.:::::::::: : .:.. ...     :: : :  
NP_006 DVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTAR-GLNGRGHALLILRPEELGFLR--
            490       500       510        520       530           

     380           390        400       410       420       430    
pF1KB8 HLIGKKLP----GFP-TQDDEVMMLTERVAEAQRFARMELREHGEKKKRSREDAGDNDDT
       .:  .:.:     :  .. ....   :.. : . :    :.. ...  .:   : :. . 
NP_006 YLKQSKVPLSEFDFSWSKISDIQSQLEKLIEKNYF----LHKSAQEAYKSYIRAYDSHSL
     540       550       560       570           580       590     

          440       450                                            
pF1KB8 EGAIGVRNKVAGGKMKKRKGR                                       
       .  ..: :                                                    
NP_006 KQIFNVNNLNLPQVALSFGFKVPPFVDLNVNSNEGKQKKRGGGGGFGYQKTKKVEKSKIF
         600       610       620       630       640       650     

>>XP_016879601 (OMIM: 613369) PREDICTED: ATP-dependent R  (775 aa)
 initn: 750 init1: 252 opt: 753  Z-score: 868.2  bits: 170.7 E(85289): 1.3e-41
Smith-Waterman score: 753; 37.9% identity (68.3% similar) in 356 aa overlap (25-371:91-443)

                     10        20        30        40        50    
pF1KB8       MAAPEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEA
                                     .:  .:  . : .   .  .:.:: :: ..
XP_016 ITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQG
               70        80        90       100       110       120

           60        70        80             90       100         
pF1KB8 IPLALQGRDIIGLAETGPGKTGAFALPILNAL-----LETPQRLFALVLTPTRELAFQIS
       .:.::.:::.::.:.:: :::.::  :.:  .     ::  .  .:... :::::  :: 
XP_016 VPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIH
              130       140       150       160       170       180

     110       120       130       140       150       160         
pF1KB8 EQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALK
        . . .:.. ...:... :: .   :. :: .  .:.. ::::::::... :. ::. ..
XP_016 AECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKK-KATNLQRVS
              190       200       210       220       230          

     170       180       190       200       210       220         
pF1KB8 YLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS
       :::.:::::...: :: .: .: . .  ::.:.:::::. ::..:: :  : .:.. . .
XP_016 YLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQG
     240       250       260       270       280       290         

     230       240          250       260        270       280     
pF1KB8 SKYQTVEKLQQYYIFI---PSKFKDTYLVYILNELAGN-SFMIFCSTCNNTQRTALLLRN
       .  .. : . :   ..   :::.  ..:.  : :.... : ..: .   :... :  :..
XP_016 DIGEANEDVTQIVEILHSGPSKW--NWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQ
     300       310       320         330       340       350       

         290       300       310       320       330       340     
pF1KB8 LGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSK
        : .   :::.:.::.:   .. :: :   .:.:::::.:::::: . .:.:.:.     
XP_016 EGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDID
       360       370       380       390       400       410       

         350       360       370       380       390       400     
pF1KB8 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPGFPTQDDEVMMLTERVAE
        . ::.:::.:::..: : :..:  :                                  
XP_016 THTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRK
       420       430       440       450       460       470       

>>XP_016879600 (OMIM: 613369) PREDICTED: ATP-dependent R  (938 aa)
 initn: 716 init1: 252 opt: 753  Z-score: 867.0  bits: 170.7 E(85289): 1.5e-41
Smith-Waterman score: 753; 37.9% identity (68.3% similar) in 356 aa overlap (25-371:254-606)

                     10        20        30        40        50    
pF1KB8       MAAPEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEA
                                     .:  .:  . : .   .  .:.:: :: ..
XP_016 ITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQG
           230       240       250       260       270       280   

           60        70        80             90       100         
pF1KB8 IPLALQGRDIIGLAETGPGKTGAFALPILNAL-----LETPQRLFALVLTPTRELAFQIS
       .:.::.:::.::.:.:: :::.::  :.:  .     ::  .  .:... :::::  :: 
XP_016 VPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIH
           290       300       310       320       330       340   

     110       120       130       140       150       160         
pF1KB8 EQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALK
        . . .:.. ...:... :: .   :. :: .  .:.. ::::::::... :. ::. ..
XP_016 AECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKK-KATNLQRVS
           350       360       370       380       390        400  

     170       180       190       200       210       220         
pF1KB8 YLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS
       :::.:::::...: :: .: .: . .  ::.:.:::::. ::..:: :  : .:.. . .
XP_016 YLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQG
            410       420       430       440       450       460  

     230       240          250       260        270       280     
pF1KB8 SKYQTVEKLQQYYIFI---PSKFKDTYLVYILNELAGN-SFMIFCSTCNNTQRTALLLRN
       .  .. : . :   ..   :::.  ..:.  : :.... : ..: .   :... :  :..
XP_016 DIGEANEDVTQIVEILHSGPSKW--NWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQ
            470       480         490       500       510       520

         290       300       310       320       330       340     
pF1KB8 LGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSK
        : .   :::.:.::.:   .. :: :   .:.:::::.:::::: . .:.:.:.     
XP_016 EGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDID
              530       540       550       560       570       580

         350       360       370       380       390       400     
pF1KB8 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPGFPTQDDEVMMLTERVAE
        . ::.:::.:::..: : :..:  :                                  
XP_016 THTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRK
              590       600       610       620       630       640

>>XP_006721720 (OMIM: 613369) PREDICTED: ATP-dependent R  (938 aa)
 initn: 716 init1: 252 opt: 753  Z-score: 867.0  bits: 170.7 E(85289): 1.5e-41
Smith-Waterman score: 753; 37.9% identity (68.3% similar) in 356 aa overlap (25-371:254-606)

                     10        20        30        40        50    
pF1KB8       MAAPEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEA
                                     .:  .:  . : .   .  .:.:: :: ..
XP_006 ITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQG
           230       240       250       260       270       280   

           60        70        80             90       100         
pF1KB8 IPLALQGRDIIGLAETGPGKTGAFALPILNAL-----LETPQRLFALVLTPTRELAFQIS
       .:.::.:::.::.:.:: :::.::  :.:  .     ::  .  .:... :::::  :: 
XP_006 VPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIH
           290       300       310       320       330       340   

     110       120       130       140       150       160         
pF1KB8 EQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALK
        . . .:.. ...:... :: .   :. :: .  .:.. ::::::::... :. ::. ..
XP_006 AECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKK-KATNLQRVS
           350       360       370       380       390        400  

     170       180       190       200       210       220         
pF1KB8 YLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS
       :::.:::::...: :: .: .: . .  ::.:.:::::. ::..:: :  : .:.. . .
XP_006 YLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQG
            410       420       430       440       450       460  

     230       240          250       260        270       280     
pF1KB8 SKYQTVEKLQQYYIFI---PSKFKDTYLVYILNELAGN-SFMIFCSTCNNTQRTALLLRN
       .  .. : . :   ..   :::.  ..:.  : :.... : ..: .   :... :  :..
XP_006 DIGEANEDVTQIVEILHSGPSKW--NWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQ
            470       480         490       500       510       520

         290       300       310       320       330       340     
pF1KB8 LGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSK
        : .   :::.:.::.:   .. :: :   .:.:::::.:::::: . .:.:.:.     
XP_006 EGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDID
              530       540       550       560       570       580

         350       360       370       380       390       400     
pF1KB8 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPGFPTQDDEVMMLTERVAE
        . ::.:::.:::..: : :..:  :                                  
XP_006 THTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRK
              590       600       610       620       630       640

>>NP_987095 (OMIM: 613369) ATP-dependent RNA helicase DD  (938 aa)
 initn: 716 init1: 252 opt: 753  Z-score: 867.0  bits: 170.7 E(85289): 1.5e-41
Smith-Waterman score: 753; 37.9% identity (68.3% similar) in 356 aa overlap (25-371:254-606)

                     10        20        30        40        50    
pF1KB8       MAAPEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEA
                                     .:  .:  . : .   .  .:.:: :: ..
NP_987 ITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQG
           230       240       250       260       270       280   

           60        70        80             90       100         
pF1KB8 IPLALQGRDIIGLAETGPGKTGAFALPILNAL-----LETPQRLFALVLTPTRELAFQIS
       .:.::.:::.::.:.:: :::.::  :.:  .     ::  .  .:... :::::  :: 
NP_987 VPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIH
           290       300       310       320       330       340   

     110       120       130       140       150       160         
pF1KB8 EQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALK
        . . .:.. ...:... :: .   :. :: .  .:.. ::::::::... :. ::. ..
NP_987 AECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKK-KATNLQRVS
           350       360       370       380       390        400  

     170       180       190       200       210       220         
pF1KB8 YLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS
       :::.:::::...: :: .: .: . .  ::.:.:::::. ::..:: :  : .:.. . .
NP_987 YLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQG
            410       420       430       440       450       460  

     230       240          250       260        270       280     
pF1KB8 SKYQTVEKLQQYYIFI---PSKFKDTYLVYILNELAGN-SFMIFCSTCNNTQRTALLLRN
       .  .. : . :   ..   :::.  ..:.  : :.... : ..: .   :... :  :..
NP_987 DIGEANEDVTQIVEILHSGPSKW--NWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQ
            470       480         490       500       510       520

         290       300       310       320       330       340     
pF1KB8 LGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSK
        : .   :::.:.::.:   .. :: :   .:.:::::.:::::: . .:.:.:.     
NP_987 EGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDID
              530       540       550       560       570       580

         350       360       370       380       390       400     
pF1KB8 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPGFPTQDDEVMMLTERVAE
        . ::.:::.:::..: : :..:  :                                  
NP_987 THTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRK
              590       600       610       620       630       640




455 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:40:30 2016 done: Fri Nov  4 14:40:31 2016
 Total Scan time:  7.770 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
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