GENSCAN 1.0	Date run:  4-Nov-116	Time: 14:38:28

Sequence gi568815575f:52982499_53187936 : 205438 bp : 44.07% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1991   1993    3  1  0   98  103     0 0.017   2.50
 1.02 Intr +   8376   8564  189  2  0  -66   89   175 0.004   1.98
 1.03 Intr +   9132   9233  102  2  0  117  110    -2 0.898   5.27
 1.04 Intr +  11576  11605   30  1  0   34  116    49 0.564   0.63
 1.05 Intr +  13395  13493   99  2  0   36   76    80 0.726   1.91
 1.06 Intr +  18057  18128   72  2  0   39   47   146 0.646   5.20
 1.07 Intr +  37407  37548  142  2  1    9   63   208 0.749  10.33
 1.08 Term +  45036  45220  185  1  2   81   49   137 0.987   6.81
 1.09 PlyA +  45231  45236    6                               1.05

 2.00 Prom +  53184  53223   40                              -4.26
 2.01 Sngl +  94124  95245 1122  1  0   64   48  1781 0.991 168.40
 2.02 PlyA +  97758  97763    6                              -0.45

 3.00 Prom +  98105  98144   40                              -6.56
 3.01 Init + 100001 100798  798  1  0  106  -17   752 0.202  61.21
 3.02 Intr + 102014 102124  111  1  0   34   71   119 0.353   5.38
 3.03 Intr + 102257 102368  112  1  1   39  111   201 0.891  17.45
 3.04 Intr + 102456 102601  146  1  2  116   59    44 0.554   4.30
 3.05 Intr + 102729 102823   95  2  2   96   47    74 0.546   2.86
 3.06 Intr + 103058 103812  755  2  2   60  105  1519 0.307 141.91
 3.07 Term + 105278 105441  164  0  2  109   49   201 0.894  16.40
 3.08 PlyA + 106021 106026    6                               1.05

 4.04 PlyA - 106823 106818    6                               1.05
 4.03 Term - 108799 108720   80  2  2  123   42    62 0.854   3.03
 4.02 Intr - 110946 110779  168  1  0   93   55    65 0.753   3.62
 4.01 Init - 112874 112841   34  2  1   73  113     0 0.430   1.04
 4.00 Prom - 117479 117440   40                              -3.86

 5.08 PlyA - 119766 119761    6                               1.05
 5.07 Term - 130806 130627  180  0  0   73   48   176 0.398   9.71
 5.06 Intr - 145403 145377   27  2  0   83  103    16 0.013   0.91
 5.05 Intr - 160682 160431  252  2  0  -14   50   499 0.025  33.53
 5.04 Intr - 160807 160688  120  1  0    6   71   318 0.731  22.59
 5.03 Intr - 161291 161109  183  2  0   20   10   371 0.692  22.48
 5.02 Intr - 161421 161308  114  0  0  120   60    90 0.810  10.04
 5.01 Init - 162972 162847  126  0  0   86   93    28 0.773   1.45
 5.00 Prom - 163354 163315   40                             -13.78

 6.00 Prom + 163523 163562   40                             -10.15
 6.01 Sngl + 163631 163993  363  1  0   71   48   336 0.067  23.98
 6.02 PlyA + 164390 164395    6                               1.05

 7.00 Prom + 164925 164964   40                              -4.96
 7.01 Sngl + 166101 166484  384  2  0   26   55   202 0.555   6.89
 7.02 PlyA + 166503 166508    6                               1.05

 8.00 Prom + 167269 167308   40                              -2.46
 8.01 Init + 167393 167525  133  1  1   78   47    59 0.324   1.10
 8.02 Term + 178099 178172   74  2  2   53   32   171 0.536   6.07
 8.03 PlyA + 178190 178195    6                               1.05

 9.04 PlyA - 178612 178607    6                               1.05
 9.03 Term - 180893 180819   75  2  0   24   38   163 0.692   2.74
 9.02 Intr - 182058 181943  116  1  2   50   36   111 0.274   2.27
 9.01 Init - 188946 188901   46  0  1   78   97     6 0.346   1.41

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr +   8258   8564  307  2  1   42   89   164 0.956   8.35
S.002 Init - 133448 133349  100  2  1   84   94    47 0.803   5.32
S.003 Sngl + 163544 163993  450  1  0   88   48   364 0.918  28.62
S.004 Term + 198692 198765   74  0  2  106   38    47 0.863  -0.43


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815575f:52982499_53187936|GENSCAN_predicted_peptide_1|273_aa
MKEEEEEEDQEGLGKGLCSELGLMRIQKALTCEWVIEVELTVTELGEKSMIHVRWSASVW
YRITGGHSLSWRLRSICLPLWPQYGDNDSYHQGLPRKRFLDRDLTAKKDRTVPSRAPLGG
ANKEQLVDADTHGPFRAGPQRPLCLTVREREDPGTRLYECIPLYSSKTLSPKKIEEEEEE
EEEEEEEEKEEEEEEEKESAELDLDAGIRLDFRPTLEPSEELLEPIALWAVPDEQLSIDQ
QGAAWFTDGSSQGNGNCLVWKAAALKPGHGKMD

>gi568815575f:52982499_53187936|GENSCAN_predicted_CDS_1|822_bp
atgaaggaggaggaggaagaggaggaccaggaaggcctcggcaaaggactgtgctcggag
ctggggctgatgagaatacagaaggccctcacctgtgaatgggtgatagaagtagagttg
acagtcacggagttgggtgagaaaagcatgattcatgttaggtggtcagccagtgtctgg
tacagaatcacgggtgggcactcactctcttggaggctaaggtccatctgtctacctctg
tggccccagtatggggacaatgacagttaccatcaaggcttgccaaggaagaggttcctg
gaccgagacctcacagccaaaaaggatagaactgttccatcccgcgcgccccttggtggt
gcaaacaaggaacagctagtggatgcagatacccatggaccattccgggctggtccccag
aggccactgtgcctgaccgtgcgcgagcgcgaagacccagggacccggctctacgagtgc
atcccgctgtactctagcaaaaccctgtctccaaaaaaaatagaagaagaagaagaagaa
gaggaagaggaagaggaagaagaaaaggaggaggaagaggaggaggaaaaagagagtgct
gagttggaccttgatgctggaataagactagatttcagaccgactttagaaccatctgag
gagctactggaaccaattgccctatgggcagtgcccgatgaacagctctcaattgaccaa
caaggagctgcttggtttacagatggcagttcccaggggaatggaaactgccttgtttgg
aaagctgctgcattaaaaccaggacacggaaagatggattga

>gi568815575f:52982499_53187936|GENSCAN_predicted_peptide_2|373_aa
MANTTGEPEEVSGALSPPSASAYVKLVLLGLIMCVSLAGNAILSLLVLKERALHKAPYYF
LLDLCLADGIRSAVCFPFVLASVRHGSSWTFSALSCKIVAFMAVLFCFHAAFMLFCISVT
RYMAIAHHRFYAKRMTLWTCAAVICMAWTLSVAMAFPPVFDVGTYKFIREEDQCIFEHRY
FKANDTLGFMLMLAVLMAATHAVYGKLLLFEYRHRKMKPVQMVPAISQNWTFHGPGATGQ
AAANWIAGFGRGPMPPTLLGIRQNGHAASRRLLGMDEVKGEKQLGRMFYAITLLFLLLWS
PYIVACYWRVFVKACAVPHRYLATAVWMSFAQAAVNPIVCFLLNKDLKKCLRTHAPCWGT
GGAPAPREPYCVM

>gi568815575f:52982499_53187936|GENSCAN_predicted_CDS_2|1122_bp
atggccaacactaccggagagcctgaggaggtgagcggcgctctgtccccaccgtccgca
tcagcttatgtgaagctggtactgctgggactgattatgtgcgtgagcctggcgggtaac
gccatcttgtccctgctggtgctcaaggagcgtgccctgcacaaggctccttactacttc
ctgctggacctgtgcctggccgatggcatacgctctgccgtctgcttcccctttgtgctg
gcttctgtgcgccacggctcttcatggaccttcagtgcactcagctgcaagattgtggcc
tttatggccgtgctcttttgcttccatgcggccttcatgctgttctgcatcagcgtcacc
cgctacatggccatcgcccaccaccgcttctacgccaagcgcatgacactctggacatgc
gcggctgtcatctgcatggcctggaccctgtctgtggccatggccttcccacctgtcttt
gacgtgggcacctacaagtttattcgggaggaggaccagtgcatctttgagcatcgctac
ttcaaggccaatgacacgctgggcttcatgcttatgttggctgtgctcatggcagctacc
catgctgtctacggcaagctgctcctcttcgagtatcgtcaccgcaagatgaagccagtg
cagatggtgccagccatcagccagaactggacattccatggtcccggggccaccggccag
gctgctgccaactggatcgccggctttggccgtgggcccatgccaccaaccctgctgggt
atccggcagaatgggcatgcagccagccggcggctactgggcatggacgaggtcaagggt
gaaaagcagctgggccgcatgttctacgcgatcacactgctctttctgctcctctggtca
ccctacatcgtggcctgctactggcgagtgtttgtgaaagcctgtgctgtgccccaccgc
tacctggccactgctgtttggatgagcttcgcccaggctgccgtcaacccaattgtctgc
ttcctgctcaacaaggacctcaagaagtgcctgaggactcacgccccctgctggggcaca
ggaggtgccccggctcccagagaaccctactgtgtcatgtga

>gi568815575f:52982499_53187936|GENSCAN_predicted_peptide_3|726_aa
MDRPDEGPPAKTRRLSSSESPQRDPPPPPPPPPLLRLPLPPPQQRPRLQEETEAAQVLAD
MRGVGLGPALPPPPPYVILEEGGIRAYFTLGAECPGWDSTIESGYGEAPPPTESLEALPT
PEASGGSLEIDFQVVQSSSFGGEGALETCSAVGWAPQRLVDPKSKEEAIIIVEDEDEDER
ESMRSSRRRRRRRRRKQRKVKRESRERNAERMESILQALEDIQLDLEAVNIKAGKAFLRL
KRKFIQMRRPFLERRDLIIQHIPGFWSILDLNCSTHQFLNHPRISILINRRDEDIFRYLT
NLQVQDLRHISMGYKMKLYFQTNPYFTNMVIVKEFQRNRSGRLVSHSTPIRWHRGQEPQA
RRHGNQDASHSFFSWFSNHSLPEADRIAEIIKNDLWVNPLRYYLRERGSRIKRKKQEMKK
RYFPPLSAMSTPPPTNPILSHSLPYSKTRGRCEVVIMEDAPDYYAVEDIFSEISDIDETI
HDIKISDFMETTDYFETTDNEITDINENICDSENPDHNEVPNNETTDNNESADDHETTDN
NESADDNNENPEDNNKNTDDNEENPNNNENTYGNNFFKGGFWGSHGNNQDSSDSDNEADE
ASDDEDNDGNEGDNEGSDDDGNEGDNEGSDDDDRDIEYYEKVIEDFDKDQADYEDVIEII
SDESVEEEGIEEGIQQDEDIYEEGNYEEEGSEDVWEEGEDSDDSDLEDVLQVPNGWANPG
KRGKTG

>gi568815575f:52982499_53187936|GENSCAN_predicted_CDS_3|2181_bp
atggaccgcccagatgaggggcctccggccaagacccgccgcctgagcagctccgagtct
ccacagcgcgacccgcccccgccgccgccgccgccgccgctcctccgactgccgctgcct
ccaccccagcagcgcccgaggctccaggaggaaacggaggcggcacaggtgctggccgat
atgaggggggtgggactgggccccgcgctgcccccgccgcctccctatgtcattctcgag
gagggggggatccgcgcatacttcacgctcggtgctgagtgtcccggctgggattctacc
atcgagtcggggtatggggaggcgcccccgcccacggagagcctggaagcactccccact
cctgaggcctcgggggggagcctggaaatcgattttcaggttgtacagtcgagcagtttt
ggtggagagggggccctagaaacctgtagcgcagtggggtgggcgccccagaggttagtt
gacccgaagagcaaggaagaggcgatcatcatagtggaggatgaggatgaggatgagcgg
gagagtatgaggagcagcaggaggcggcggcggcggcggaggaggaagcagaggaaggtg
aagagggaaagcagagagagaaatgccgagaggatggagagcatcctgcaggcactggag
gatattcagctggatctggaggcagtgaacatcaaggcaggcaaagccttcctgcgtctc
aagcgcaagttcatccagatgcgaagacccttcctggagcgcagagacctcatcatccag
catatcccaggcttctggtcaatccttgacctaaactgctccactcatcagttcctcaac
caccccagaatttcaattttgatcaaccgacgtgatgaagacattttccgctacttgacc
aatctgcaggtacaggatctcagacatatctccatgggctacaaaatgaagctgtacttc
cagactaacccctacttcacaaacatggtgattgtcaaggagttccagcgcaaccgctca
ggccggctggtgtctcactcaaccccaatccgctggcaccggggccaggaaccccaggcc
cgtcgtcacgggaaccaggatgcgagccacagctttttcagctggttctcaaaccatagc
ctcccagaggctgacaggattgctgagattatcaagaatgatctgtgggttaaccctcta
cgctactacctgagagaaaggggctccaggataaagagaaagaagcaagaaatgaagaaa
cgttacttcccacctttgagtgctatgagtacaccacctcccaccaaccctatactcagc
cacagccttccttacagtaaaaccaggggcagatgtgaggtggtgatcatggaagacgcc
cctgactattatgcagtggaagacattttcagcgagatctcagacattgatgagacaatt
catgacatcaagatctctgacttcatggagaccaccgactacttcgagaccactgacaat
gagataactgacatcaatgagaacatctgcgacagcgagaatcctgaccacaatgaggtc
cccaacaacgagaccactgataacaacgagagtgctgatgaccacgaaaccactgacaac
aatgagagtgcagatgacaacaacgagaatcctgaagacaataacaagaacactgatgac
aacgaagagaaccctaacaacaacgagaacacttacggcaacaacttcttcaaaggtggc
ttctggggcagccatggcaacaaccaggacagcagcgacagtgacaatgaagcagatgag
gccagtgatgatgaagataatgatggcaacgaaggtgacaatgagggcagtgatgatgat
ggcaatgaaggtgacaatgaaggcagcgatgatgacgacagagacattgagtactatgag
aaagttattgaagactttgacaaggatcaggctgactacgaggacgtgatagagatcatc
tcagacgaatcagtggaagaagagggcattgaggaaggcatccagcaagatgaggacatc
tatgaggaaggaaactatgaggaggaaggaagtgaagatgtctgggaagaaggggaagat
tcggacgactctgacctagaggatgtgcttcaggtcccaaacggttgggccaatccgggg
aagagggggaaaaccggataa

>gi568815575f:52982499_53187936|GENSCAN_predicted_peptide_4|93_aa
MRMEGILLITEVFRRTELMAQRGKLTGLKSHSQAPPLARSGPASSRYHSPPPPRLCVFLP
YTAGSRRSLSQWGLSSLAFSEDSILELDVTLKT

>gi568815575f:52982499_53187936|GENSCAN_predicted_CDS_4|282_bp
atgagaatggagggaattttgctgataactgaagtattcaggcggacagaacttatggcc
cagagaggcaaactgactggcttgaagtcacacagccaggccccacccctcgcgcgctcc
ggccctgcctcttcccgctaccactccccaccaccgccccgtctttgcgtcttcttaccg
tacaccgccggcagtcggcgcagtctcagccaatggggcctgtcttctctggccttcagc
gaagacagtatcttggagctagatgtgaccttaaagacctag

>gi568815575f:52982499_53187936|GENSCAN_predicted_peptide_5|333_aa
MAGAPPPASLPPCSLSSDCCASNERESVGVGPSEPGAGYNLLVAMEIEIAALIIDNGSGM
CKAGFAGDGWPLSCVPLHHQGVMVGMGQKDSYMGHEAQSKHDILTLKYPIEHGIITIWDD
MEKIWHHTFYNELCMTPEKHPEIVRDINEKVCYIALDFEQEMATATSSSSLEKSYELPDG
QVITIGNKWFWCLQVLFQPSFLGMESCGIHKTTFNSIMKCDVDIRKDLYANTVLSSSTTM
CPGITTLASSTMKIKFIMPPEHKYSPPYHHQVPQAWLVAIGLGKFMKPGKVVLVLAECYS
GHKAVTMKNVDKGTSIFPYSHALMAGIDCYPRK

>gi568815575f:52982499_53187936|GENSCAN_predicted_CDS_5|1002_bp
atggcgggtgcccctcccccagcctcgctgccaccttgcagtttgagctcagactgctgt
gctagcaatgagcgagaatctgtgggcgtaggaccctccgagccaggggcgggatataat
ctcctggttgcaatggaaatagagatcgccgcgctcatcattgacaatggctctggcatg
tgcaaagctggctttgctggggatggatggcccctgagctgtgttcccctccatcatcag
ggtgtgatggtgggcatgggccagaaggactcctacatgggccatgaggcccagagcaag
cacgacatcctgaccctgaagtaccctatcgagcatggcatcatcaccatctgggatgac
atggagaagatctggcaccacaccttctacaacgagctgtgcatgaccccagagaagcac
ccggagattgtgcgcgacatcaacgagaaggtgtgctacatcgccctggacttcgagcag
gagatggccactgccacatcctcctcctccctggagaagagctatgagctgcctgatggc
caggtcatcaccatcggcaacaagtggttctggtgtctgcaggtgctgttccagccttcc
ttcttgggcatggaatcctgcggcatccacaagaccaccttcaactccatcatgaagtgt
gacgtggacatccgcaaagacctgtacgccaacacagtgctgtccagcagcaccaccatg
tgccctggcatcaccacgctggcatccagcaccatgaagatcaagttcatcatgccccca
gagcacaagtactcgcccccctaccaccaccaagtaccacaggcttggttggttgctata
ggcttgggcaagttcatgaaacctgggaaagtggtgctggtcctggctgaatgctactct
ggacacaaagctgtcaccatgaagaacgttgataagggcacctcaatcttcccctacagc
cacgctctgatggctggaattgactgctatccccgcaaatga

>gi568815575f:52982499_53187936|GENSCAN_predicted_peptide_6|120_aa
MEQSWMENDELREEGFRQSNYSKLKEEVRTNGKEVKNLEKRLDKSLTRITNAEKSLKDLM
ELKTTAQELSDECTSLSSRFDQLEERVSVMEDQMNEMKREEKFREKRIKRNKASKKYGTM

>gi568815575f:52982499_53187936|GENSCAN_predicted_CDS_6|363_bp
atggaacaaagctggatggagaatgacgagttgagagaagaaggcttcagacaatcaaac
tactccaagctaaaggaggaagttcgaaccaatggcaaagaagttaaaaaccttgaaaaa
agattagacaaatcactaactagaataaccaatgcagagaagtccttaaaggacctgatg
gagctgaaaaccacagcacaagaactatctgatgaatgcacaagcctcagtagccgattc
gatcaactggaagaaagggtatcagtgatggaagatcaaatgaatgaaatgaagcgagaa
gagaagtttagagaaaaaagaataaaaagaaacaaagcctccaagaaatatgggactatg
tga

>gi568815575f:52982499_53187936|GENSCAN_predicted_peptide_7|127_aa
MEEHSMLMDRKSQYRENAILPKVIYRFNAIPIKLPMTFFTELEKTSLKFIWNQKRACMAK
SILSQKNKAGGITLPDFKLYYKAIVTKTAWYWYQNRDIDQWNRTEPSEIMPRIYNHLIFD
KPEKNKQ

>gi568815575f:52982499_53187936|GENSCAN_predicted_CDS_7|384_bp
atggaagaacattccatgctcatggataggaagagtcaatatcgtgaaaatgccatactg
cccaaggtaatttatagattcaatgccatccccatcaagctaccaatgactttcttcaca
gaattggaaaaaacttctttaaagttcatatggaaccaaaaaagagcctgcatggccaag
tcaatcctaagccaaaagaacaaagctggaggcatcacgctacctgacttcaaactatac
tacaaggctatagtaaccaaaacagcatggtactggtaccaaaacagagatatagaccaa
tggaacagaacagagccctcagaaataatgccacgtatctacaaccatctgatctttgac
aaacctgagaaaaacaagcaatga

>gi568815575f:52982499_53187936|GENSCAN_predicted_peptide_8|68_aa
MEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHRMFSLIEIVAQEVVYESEYEKH
EKELYERK

>gi568815575f:52982499_53187936|GENSCAN_predicted_CDS_8|207_bp
atggaatattatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatg
aagctggaaaccatcattctcagcaaactatcacaaggacaaaaaaccaaacaccgcatg
ttctcactcatagagatagtggcccaggaagttgtgtatgagagcgaatatgagaaacat
gaaaaggagctgtatgagcgcaaataa

>gi568815575f:52982499_53187936|GENSCAN_predicted_peptide_9|78_aa
MASRLVLGSAPNRKAAMFSTRTKNAGEELTFDYQMKGSGDVSSDSIDHSPAKKRVSGIVA
PQNRDFEDVNEGLLEQRN

>gi568815575f:52982499_53187936|GENSCAN_predicted_CDS_9|237_bp
atggcatcccgtttggtcctgggatcagctccaaataggaaggcagcaatgttttccacg
agaaccaaaaatgctggagaagagctgacttttgattatcaaatgaaaggttctggagat
gtatcttcagattctattgaccacagcccagccaaaaagagggtcagcggcatagtggcg
ccccagaacagggacttcgaggacgtgaacgaaggtctgctggagcagaggaactga