Result of FASTA (omim) for pF1KB8688
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8688, 502 aa
  1>>>pF1KB8688 502 - 502 aa - 502 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8766+/-0.000336; mu= 12.4609+/- 0.021
 mean_var=135.7362+/-27.643, 0's: 0 Z-trim(118.2): 22  B-trim: 302 in 1/54
 Lambda= 0.110085
 statistics sampled from 30970 (30991) to 30970 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.363), width:  16
 Scan time: 10.940

The best scores are:                                      opt bits E(85289)
NP_001164675 (OMIM: 609787) ubiquitin-associated p ( 502) 3294 534.6 2.5e-151
NP_001164674 (OMIM: 609787) ubiquitin-associated p ( 502) 3294 534.6 2.5e-151
XP_006716842 (OMIM: 609787) PREDICTED: ubiquitin-a ( 502) 3294 534.6 2.5e-151
XP_011516201 (OMIM: 609787) PREDICTED: ubiquitin-a ( 502) 3294 534.6 2.5e-151
XP_016870290 (OMIM: 609787) PREDICTED: ubiquitin-a ( 502) 3294 534.6 2.5e-151
NP_057609 (OMIM: 609787) ubiquitin-associated prot ( 502) 3294 534.6 2.5e-151
NP_001164672 (OMIM: 609787) ubiquitin-associated p ( 566) 3221 523.1 8.5e-148
XP_016870291 (OMIM: 609787) PREDICTED: ubiquitin-a ( 488) 2934 477.4  4e-134
XP_011516200 (OMIM: 609787) PREDICTED: ubiquitin-a ( 509) 2934 477.4 4.1e-134
XP_011516202 (OMIM: 609787) PREDICTED: ubiquitin-a ( 450) 2933 477.2 4.2e-134
NP_001164673 (OMIM: 609787) ubiquitin-associated p ( 538) 2934 477.5 4.3e-134


>>NP_001164675 (OMIM: 609787) ubiquitin-associated prote  (502 aa)
 initn: 3294 init1: 3294 opt: 3294  Z-score: 2837.8  bits: 534.6 E(85289): 2.5e-151
Smith-Waterman score: 3294; 100.0% identity (100.0% similar) in 502 aa overlap (1-502:1-502)

               10        20        30        40        50        60
pF1KB8 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
              430       440       450       460       470       480

              490       500  
pF1KB8 LLLHNNDQDNALEDLMARAGAS
       ::::::::::::::::::::::
NP_001 LLLHNNDQDNALEDLMARAGAS
              490       500  

>>NP_001164674 (OMIM: 609787) ubiquitin-associated prote  (502 aa)
 initn: 3294 init1: 3294 opt: 3294  Z-score: 2837.8  bits: 534.6 E(85289): 2.5e-151
Smith-Waterman score: 3294; 100.0% identity (100.0% similar) in 502 aa overlap (1-502:1-502)

               10        20        30        40        50        60
pF1KB8 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
              430       440       450       460       470       480

              490       500  
pF1KB8 LLLHNNDQDNALEDLMARAGAS
       ::::::::::::::::::::::
NP_001 LLLHNNDQDNALEDLMARAGAS
              490       500  

>>XP_006716842 (OMIM: 609787) PREDICTED: ubiquitin-assoc  (502 aa)
 initn: 3294 init1: 3294 opt: 3294  Z-score: 2837.8  bits: 534.6 E(85289): 2.5e-151
Smith-Waterman score: 3294; 100.0% identity (100.0% similar) in 502 aa overlap (1-502:1-502)

               10        20        30        40        50        60
pF1KB8 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
              430       440       450       460       470       480

              490       500  
pF1KB8 LLLHNNDQDNALEDLMARAGAS
       ::::::::::::::::::::::
XP_006 LLLHNNDQDNALEDLMARAGAS
              490       500  

>>XP_011516201 (OMIM: 609787) PREDICTED: ubiquitin-assoc  (502 aa)
 initn: 3294 init1: 3294 opt: 3294  Z-score: 2837.8  bits: 534.6 E(85289): 2.5e-151
Smith-Waterman score: 3294; 100.0% identity (100.0% similar) in 502 aa overlap (1-502:1-502)

               10        20        30        40        50        60
pF1KB8 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
              430       440       450       460       470       480

              490       500  
pF1KB8 LLLHNNDQDNALEDLMARAGAS
       ::::::::::::::::::::::
XP_011 LLLHNNDQDNALEDLMARAGAS
              490       500  

>>XP_016870290 (OMIM: 609787) PREDICTED: ubiquitin-assoc  (502 aa)
 initn: 3294 init1: 3294 opt: 3294  Z-score: 2837.8  bits: 534.6 E(85289): 2.5e-151
Smith-Waterman score: 3294; 100.0% identity (100.0% similar) in 502 aa overlap (1-502:1-502)

               10        20        30        40        50        60
pF1KB8 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
              430       440       450       460       470       480

              490       500  
pF1KB8 LLLHNNDQDNALEDLMARAGAS
       ::::::::::::::::::::::
XP_016 LLLHNNDQDNALEDLMARAGAS
              490       500  

>>NP_057609 (OMIM: 609787) ubiquitin-associated protein   (502 aa)
 initn: 3294 init1: 3294 opt: 3294  Z-score: 2837.8  bits: 534.6 E(85289): 2.5e-151
Smith-Waterman score: 3294; 100.0% identity (100.0% similar) in 502 aa overlap (1-502:1-502)

               10        20        30        40        50        60
pF1KB8 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
              430       440       450       460       470       480

              490       500  
pF1KB8 LLLHNNDQDNALEDLMARAGAS
       ::::::::::::::::::::::
NP_057 LLLHNNDQDNALEDLMARAGAS
              490       500  

>>NP_001164672 (OMIM: 609787) ubiquitin-associated prote  (566 aa)
 initn: 3221 init1: 3221 opt: 3221  Z-score: 2774.5  bits: 523.1 E(85289): 8.5e-148
Smith-Waterman score: 3221; 100.0% identity (100.0% similar) in 491 aa overlap (12-502:76-566)

                                  10        20        30        40 
pF1KB8                    MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFS
                                     ::::::::::::::::::::::::::::::
NP_001 AVGSSAGTEPGRPAGASTFRLLRRRQQRHSGTFSYLDDVPFKTGDKFKTPAKVGLPIGFS
          50        60        70        80        90       100     

              50        60        70        80        90       100 
pF1KB8 LPDCLQVVREVQYDFSLEKKTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPDCLQVVREVQYDFSLEKKTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSK
         110       120       130       140       150       160     

             110       120       130       140       150       160 
pF1KB8 MSFSKTHSTATMPPPINPILASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSFSKTHSTATMPPPINPILASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFEC
         170       180       190       200       210       220     

             170       180       190       200       210       220 
pF1KB8 EEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERA
         230       240       250       260       270       280     

             230       240       250       260       270       280 
pF1KB8 TLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTA
         290       300       310       320       330       340     

             290       300       310       320       330       340 
pF1KB8 KLASTFHSTSCLRNGTFQNSLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLASTFHSTSCLRNGTFQNSLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMP
         350       360       370       380       390       400     

             350       360       370       380       390       400 
pF1KB8 SLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVN
         410       420       430       440       450       460     

             410       420       430       440       450       460 
pF1KB8 MGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFL
         470       480       490       500       510       520     

             470       480       490       500  
pF1KB8 QLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARAGAS
       :::::::::::::::::::::::::::::::::::::::::
NP_001 QLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARAGAS
         530       540       550       560      

>>XP_016870291 (OMIM: 609787) PREDICTED: ubiquitin-assoc  (488 aa)
 initn: 2933 init1: 2933 opt: 2934  Z-score: 2529.0  bits: 477.4 E(85289): 4e-134
Smith-Waterman score: 2934; 99.1% identity (99.6% similar) in 454 aa overlap (49-502:35-488)

       20        30        40        50        60        70        
pF1KB8 DVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEKKTIEWAEEIKKIEEAERE
                                     :.  .:::::::::::::::::::::::::
XP_016 NLCLLGSSHPPTSASQVAGTTGSKWLLRSWVQIFMYDFSLEKKTIEWAEEIKKIEEAERE
           10        20        30        40        50        60    

       80        90       100       110       120       130        
pF1KB8 AECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPILASLQHNSILTPTRVSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPILASLQHNSILTPTRVSSS
           70        80        90       100       110       120    

      140       150       160       170       180       190        
pF1KB8 ATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDN
          130       140       150       160       170       180    

      200       210       220       230       240       250        
pF1KB8 NLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIP
          190       200       210       220       230       240    

      260       270       280       290       300       310        
pF1KB8 AVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQNSLKPSTQSSASELNGHHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQNSLKPSTQSSASELNGHHT
          250       260       270       280       290       300    

      320       330       340       350       360       370        
pF1KB8 LGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSC
          310       320       330       340       350       360    

      380       390       400       410       420       430        
pF1KB8 PQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGF
          370       380       390       400       410       420    

      440       450       460       470       480       490        
pF1KB8 DPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR
          430       440       450       460       470       480    

      500  
pF1KB8 AGAS
       ::::
XP_016 AGAS
           

>>XP_011516200 (OMIM: 609787) PREDICTED: ubiquitin-assoc  (509 aa)
 initn: 2933 init1: 2933 opt: 2934  Z-score: 2528.7  bits: 477.4 E(85289): 4.1e-134
Smith-Waterman score: 2934; 99.1% identity (99.6% similar) in 454 aa overlap (49-502:56-509)

       20        30        40        50        60        70        
pF1KB8 DVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEKKTIEWAEEIKKIEEAERE
                                     :.  .:::::::::::::::::::::::::
XP_011 GLRTRWELEDVREGDPDFSKEGSKWLLRSWVQIFMYDFSLEKKTIEWAEEIKKIEEAERE
          30        40        50        60        70        80     

       80        90       100       110       120       130        
pF1KB8 AECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPILASLQHNSILTPTRVSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPILASLQHNSILTPTRVSSS
          90       100       110       120       130       140     

      140       150       160       170       180       190        
pF1KB8 ATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDN
         150       160       170       180       190       200     

      200       210       220       230       240       250        
pF1KB8 NLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIP
         210       220       230       240       250       260     

      260       270       280       290       300       310        
pF1KB8 AVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQNSLKPSTQSSASELNGHHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQNSLKPSTQSSASELNGHHT
         270       280       290       300       310       320     

      320       330       340       350       360       370        
pF1KB8 LGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSC
         330       340       350       360       370       380     

      380       390       400       410       420       430        
pF1KB8 PQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGF
         390       400       410       420       430       440     

      440       450       460       470       480       490        
pF1KB8 DPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR
         450       460       470       480       490       500     

      500  
pF1KB8 AGAS
       ::::
XP_011 AGAS
           

>>XP_011516202 (OMIM: 609787) PREDICTED: ubiquitin-assoc  (450 aa)
 initn: 2933 init1: 2933 opt: 2933  Z-score: 2528.6  bits: 477.2 E(85289): 4.2e-134
Smith-Waterman score: 2933; 100.0% identity (100.0% similar) in 449 aa overlap (54-502:2-450)

            30        40        50        60        70        80   
pF1KB8 TGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEKKTIEWAEEIKKIEEAEREAECKI
                                     ::::::::::::::::::::::::::::::
XP_011                              MYDFSLEKKTIEWAEEIKKIEEAEREAECKI
                                            10        20        30 

            90       100       110       120       130       140   
pF1KB8 AEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPILASLQHNSILTPTRVSSSATKQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPILASLQHNSILTPTRVSSSATKQK
              40        50        60        70        80        90 

           150       160       170       180       190       200   
pF1KB8 VLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDNNLPRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDNNLPRG
             100       110       120       130       140       150 

           210       220       230       240       250       260   
pF1KB8 GSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIPAVSNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIPAVSNI
             160       170       180       190       200       210 

           270       280       290       300       310       320   
pF1KB8 KSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQNSLKPSTQSSASELNGHHTLGLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQNSLKPSTQSSASELNGHHTLGLSA
             220       230       240       250       260       270 

           330       340       350       360       370       380   
pF1KB8 LNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSCPQAYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSCPQAYS
             280       290       300       310       320       330 

           390       400       410       420       430       440   
pF1KB8 ELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGFDPLLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGFDPLLV
             340       350       360       370       380       390 

           450       460       470       480       490       500  
pF1KB8 EEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARAGAS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARAGAS
             400       410       420       430       440       450




502 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:36:12 2016 done: Fri Nov  4 14:36:14 2016
 Total Scan time: 10.940 Total Display time:  0.110

Function used was FASTA [36.3.4 Apr, 2011]
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