GENSCAN 1.0	Date run:  4-Nov-116	Time: 14:28:29

Sequence gi568815596r:152020577_152250230 : 229654 bp : 41.05% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  11284  11491  208  1  1   61  -13   200 0.002   5.36
 1.02 Intr +  14088  14196  109  2  1  110   74    28 0.019   2.54
 1.03 Intr +  21761  21846   86  0  2  120   47    24 0.021   0.12
 1.04 Intr +  26006  26109  104  1  2   73  115    -6 0.067  -1.35
 1.05 Intr +  28205  28369  165  2  0  110   54    63 0.213   3.25
 1.06 Intr +  38054  38212  159  2  0   26   75   146 0.059   5.28
 1.07 Intr +  45474  45590  117  0  0   -9   75   154 0.375   3.06
 1.08 Term +  47453  47627  175  2  1   54   36   160 0.728   3.65
 1.09 PlyA +  48527  48532    6                               1.05

 2.02 PlyA -  49226  49221    6                               1.05
 2.01 Sngl -  53953  53720  234  1  0   73   45   316 0.483  20.65
 2.00 Prom -  54903  54864   40                              -6.95

 3.19 PlyA -  58854  58849    6                               1.05
 3.18 Term -  62955  62843  113  1  2   80   42   135 0.030   5.84
 3.17 Intr -  65113  64988  126  2  0   42   47    97 0.010   0.73
 3.16 Intr -  77842  77754   89  0  2   15   80   102 0.054   0.80
 3.15 Intr -  78501  78373  129  2  0   92   86   145 0.071  13.59
 3.14 Intr -  80959  80861   99  0  0   36   87    72 0.009   0.21
 3.13 Intr - 103359 103190  170  0  2   54  115    37 0.294   0.82
 3.12 Intr - 105803 105650  154  1  1   35   99    70 0.392   1.95
 3.11 Intr - 111592 111538   55  2  1   62   66    78 0.424   0.12
 3.10 Intr - 112684 112597   88  1  1   68   75    90 0.770   4.32
 3.09 Intr - 112908 112826   83  1  2   49   75   140 0.953   7.24
 3.08 Intr - 115027 114933   95  0  2   50  111   -10 0.621  -3.81
 3.07 Intr - 123437 123251  187  0  1   31  111   188 0.946  13.23
 3.06 Intr - 124381 124312   70  1  1   53   94    91 0.993   4.04
 3.05 Intr - 126732 126586  147  0  0   74   94    72 0.983   5.91
 3.04 Intr - 127546 127448   99  1  0   44   94    60 0.727   1.59
 3.03 Intr - 127724 127649   76  1  1  131   74    21 0.866   3.60
 3.02 Intr - 129653 129569   85  0  1   48   86    76 0.485   1.36
 3.01 Init - 140742 140622  121  0  1   68   74    77 0.514   4.70
 3.00 Prom - 152802 152763   40                              -5.85

 4.00 Prom + 154537 154576   40                              -6.85
 4.01 Init + 154661 154677   17  1  2   78   76    13 0.478  -1.14
 4.02 Intr + 154936 155045  110  1  2   91  -17   170 0.875   5.81
 4.03 Term + 155337 155557  221  1  2   78   29   203 0.810   9.62
 4.04 PlyA + 156794 156799    6                              -0.45

 5.04 PlyA - 156945 156940    6                               1.05
 5.03 Term - 157801 157557  245  2  2   56   44   170 0.897   4.48
 5.02 Intr - 158387 158346   42  0  0  104   98    45 0.556   4.39
 5.01 Init - 159368 158921  448  2  1   54   60   146 0.510   4.57
 5.00 Prom - 159516 159477   40                              -9.75

 6.02 PlyA - 159758 159753    6                              -0.45
 6.01 Sngl - 160208 159936  273  2  0   72   47   324 0.997  21.78
 6.00 Prom - 161051 161012   40                              -6.95

 7.00 Prom + 172549 172588   40                              -5.05
 7.01 Sngl + 172881 173234  354  2  0   36   40   235 0.829   9.30
 7.02 PlyA + 173624 173629    6                               1.05

 8.00 Prom + 174155 174194   40                              -6.15
 8.01 Init + 175419 175852  434  2  2   43   80   203 0.320  10.73
 8.02 Term + 176697 177168  472  0  1   15   39   187 0.273  -0.08
 8.03 PlyA + 178257 178262    6                               1.05

 9.03 PlyA - 178880 178875    6                               1.05
 9.02 Term - 203668 203526  143  2  2   63   48   112 0.423   1.81
 9.01 Intr - 216341 216243   99  0  0   70   98    42 0.270   2.56

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  77764  77871  108  0  0   61   93   181 0.900  14.66
S.002 Term - 169547 169441  107  0  2  101   36    87 0.914   2.39
S.003 Init - 170847 170784   64  0  1   57   96    45 0.939   3.56


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:152020577_152250230|GENSCAN_predicted_peptide_1|374_aa
XKLPFLLALGSLKGKHRADSLAKPRVKASQPVACLNEGSIRGQQTPSFHIQARAESNRAL
MIRVSGSFYSMFVILPLKHQGMASDTELLLSTTAPPQCSFKHTNPWGLVLICRSLPGGWT
IFLGASTSSGSCLTKSSIYSALHFDHWKSTPKTVLISALLRCRPKQRRSSCKVKEPNLSP
SLRLLLDLKYYYFRDQLLGRVKERREQMEAEEPKKALEYSQVTVWEAEHKSLENLQPDDV
VEKKNPFSGEKFKLDAEIGISNQESSVNINRMWKMSPGGIKPIQEALQVLRNLSAPHLTP
ASADVATYMQAQPDSNSHGAENQAQELTIKLKDLQRKMKAQSQYVSHVKVRALIGKERIP
RPGIRASGQTSENL

>gi568815596r:152020577_152250230|GENSCAN_predicted_CDS_1|1125_bp
nnaaaactgccctttctgttggcattaggctctctaaaagggaagcaccgtgctgacagt
cttgccaagccaagggtgaaagcctcacagcccgtggcttgcttgaacgaaggctccatc
aggggacagcaaactccctcatttcatattcaggcaagagcggagagcaacagagccttg
atgattcgagtgtctggatccttctatagtatgtttgtaatcctgcctttaaaacaccag
gggatggcatccgatacagagttgctgctttctacaacagcacccccacagtgctctttt
aaacacactaacccctggggtctggttcttatatgtcgtagcttgccagggggttggacc
atatttcttggagcctctacttcttcaggctcctgcttaacaaagagttctatctattca
gcactacactttgaccactggaagtccacacctaagacagtccttatttctgccctttta
agatgtcgccctaagcagaggagaagcagctgtaaagtgaaagagccaaatcttagccct
tctctgaggttgcttctagatctaaagtactactattttagggaccaactgttggggagg
gtaaaagaaagaagagagcagatggaggcagaagaaccaaagaaagcactggaatactct
caggtgactgtatgggaagcagagcataaaagtttggaaaatttgcagcctgatgatgtg
gtagagaagaaaaacccattttctggggagaaattcaagctggatgcagaaattggcata
agtaaccaggagtccagtgttaatatcaacagaatgtggaaaatgtctccaggtggaata
aagcctatacaggaagcccttcaagtacttcgcaacctctcagccccacatcttactcca
gcctctgctgacgtggccacgtacatgcaggctcaaccagattcaaacagccatggggct
gaaaatcaggctcaggaactaactataaagctgaaagacctgcaaaggaaaatgaaggca
cagtctcagtacgtctctcatgtcaaagtcagagccctcataggaaaagagaggattcca
agacctggaatcagggcatctgggcagacatctgagaatctttaa

>gi568815596r:152020577_152250230|GENSCAN_predicted_peptide_2|77_aa
MVVAVAVMVVMAERRVGTVVVIVVIMPRWLGDGYGGGAAGGDDGDVGDGGEEGGNGSSDY
AMMVVVRVLVAAMVVKR

>gi568815596r:152020577_152250230|GENSCAN_predicted_CDS_2|234_bp
atggtggtggcagtagcggtaatggtggtgatggcggagaggagggtggggacagtagta
gtgatagtagtgattatgccacgatggcttggtgatggttatggtggtggtgctgctggt
ggtgatgatggtgatgttggtgatggcggagaggagggtgggaatggtagtagtgattat
gccatgatggtagtggtgagggtgctggtggcggcgatggtggtaaagcggtga

>gi568815596r:152020577_152250230|GENSCAN_predicted_peptide_3|661_aa
MTLNEHAAFKHLFNKAHLAPPLIHSTLSGHSTCFREHRVGEKATNEYNTTEDWSLIMDIC
DKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEV
RAVIKNKAHPKVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMKEEGITFPPAGSQTVSA
AAKNGTSSNKNKEDEDIAKAIELSLQEQKQQHTETKSLYPSSEIQLNNKVARKVRALYDF
EAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETEAAAVDKLN
VIDDDVEEIKKSEPEPVYIDEDKMDRALQVLQSIDPTDSKPDSQDLLDLEDICQQMGPMI
DEKLEEIDRKHSELSELNVKVLEALELYNKLVNEAPVYSVYSKLHPPAHYPPASSGVPMQ
TYPVQSHGGNYMGQSIHQVTVAQSYSLGPDQIGPLRSLPPNVNSSVTAQPAQTSYLRSTQ
SSPTFPDFFLDEPEAKVIKAQVHSVLLWPSPASGASPLRPPHTGWPCGGSERCPPPPTPR
TGPRTGRTPPPRSPGGPRHHNPEEQVEKIRWQHHFDQLHPQTATTATQSQTLECHTQVWV
WELRREQAERKPQELWRPAGTLMVGLSLAPVIVVAVATVIQDLPFIHDPVQLGFLTIVPA
E

>gi568815596r:152020577_152250230|GENSCAN_predicted_CDS_3|1986_bp
atgactcttaacgagcatgctgccttcaagcatctgtttaacaaagcacatcttgcaccg
cccttaatccattcaaccctgagtggacacagcacatgtttcagagagcacagggttggg
gaaaaagccacgaatgagtacaacactacagaagattggagtcttattatggacatatgt
gacaaagttggaagtactcctaatggagcgaaagattgcctaaaagccataatgaaaagg
gtaaatcataaggttccacatgttgctctgcaagcactaactcttcttggggcttgtgtg
gcaaactgtggaaagatatttcatttagaagtatgttcccgtgattttgcaacagaagta
cgtgctgtgattaaaaataaggcacatcctaaagtatgtgaaaaactgaaatctttaatg
gtggagtggtcagaagaatttcagaaggaccctcagtttagtctgatatctgcaactatt
aaatctatgaaagaagaaggaattacttttcctccagcaggttctcagactgtctcagct
gctgccaagaatggtacgtcatcgaacaaaaacaaagaggatgaagacatagctaaagct
attgaattatcgctgcaagaacagaaacagcaacacacagaaacaaaatccttatatcca
tcttcagaaattcagttaaataataaggttgcacggaaagtgagagctttatatgatttt
gaagctgttgaggacaatgaactcacctttaaacatggtgaaataattattgttttggat
gacagtgatgccaattggtggaaaggagaaaatcacagaggaataggacttttcccatcc
aattttgtaacaactaatttaaacatagagactgaggcagcggctgtggacaaattgaat
gtaattgatgatgatgtggaggaaattaagaaatcagagcctgagcctgtttatatagat
gaggataagatggatagagccctgcaggtacttcagagtatagatccaacagattcaaaa
ccagactcccaagaccttttggatttagaagatatctgccaacagatgggtccaatgata
gatgaaaaacttgaagaaattgataggaagcattcagaattgtctgaattgaatgttaaa
gtcctggaagctctggaactatataacaaattggtgaatgaagcaccagtgtactcagtc
tattcaaagctccaccctccagcacattacccacctgcatcatctggggttccaatgcag
acatatccagttcaatcacatggtggaaactatatgggtcagagcattcaccaagtaact
gttgcccaaagctatagcctaggacccgatcaaattggtccactgagatctctgcctcca
aatgtgaattcctcagtgacagcacagcctgctcaaacttcatatttaagaagcactcaa
agcagtcccacgtttcctgacttctttctcgatgagccagaagcaaaggtgatcaaggcc
caagtacactcagtgctgctgtggccaagcccagcctcgggggccagccccctccgccca
ccgcacacgggctggccatgcggcggctctgaacgatgtcctcctcctcctacgccaaga
acgggaccgcggacgggccgcactcccccacctcgcagtccaggtggcccgaggcaccac
aacccggaggagcaggttgaaaagatccgatggcagcaccacttcgaccagcttcatcct
cagacagcaacaacagcaacacaaagccagaccttggagtgccacacccaagtgtgggtt
tgggagctgagaagggaacaagctgaaaggaagccgcaagagctgtggagaccagccggg
accctcatggtgggcctcagtttagcacccgttattgtggtagcagtggccacagtgatt
caggatctcccatttatccacgatcctgtccagttaggcttccttacaatagttccagca
gaataa

>gi568815596r:152020577_152250230|GENSCAN_predicted_peptide_4|115_aa
MGQRRSPRSRYRPLSSRTNSSPGPGTQQSRTGHSTHPRLARRDFCRGQAAATATFPALGP
RLATKPGTFGAGSSPAWNWTTPEAAVPAAARQGARLPVVFRVGRRALRAKFLSRI

>gi568815596r:152020577_152250230|GENSCAN_predicted_CDS_4|348_bp
atggggcaaagacggagtccccggagtcgctaccgcccactttctagccggacaaacagc
agtccagggccaggcacacagcagtccaggaccgggcacagcactcacccacgtcttgct
cgaagggacttttgtaggggtcaggcggccgctacggccacctttccagcgctaggaccc
cggctagccacgaagccggggaccttcggagccggaagtagtcccgcctggaactggacg
accccggaagctgcagtgccagcggcggcgcggcagggggcgcggttacccgtggttttt
cgcgttggacgacgggctctgagggccaagttcttgtcacgaatttag

>gi568815596r:152020577_152250230|GENSCAN_predicted_peptide_5|244_aa
MGKSEIKRTGGFGSTNKQGKAAYWVNQITDKCPTCEITIQGKKFKGLVDTEADISIISLQ
QWPSVWPIQPAQFNIVGVGKAPEVYQSSYILHCEGPDGQPGTIQPIITSAPINLWGRDLL
QQWGAQVLIPEQLYSPRSQHTMHEMGYVPDGSSNGKASYSGSKAMLRLTLRRTPTVVSYT
HQTQPPTWGQTKKLSQMAEENLRKAGQPITTSNLMVATIAVITIAISIPSTRAAETSSVG
ESLT

>gi568815596r:152020577_152250230|GENSCAN_predicted_CDS_5|735_bp
atgggaaaaagtgaaattaaacgaacaggaggatttggaagcacaaataaacaaggcaaa
gcagcttattgggtaaatcaaattactgataaatgtcctacctgtgaaataactattcag
ggaaagaaatttaaaggtttggtagatacagaagcggacatttcaatcatttctctacag
cagtggccgtctgtgtggccaattcaacccgctcaatttaacatagttggagttggtaaa
gcccctgaagtatatcaaagtagttatattttgcattgtgaagggcctgatggacaacct
gggactattcaaccaattataacttctgcacctataaatttatggggaagagatttgtta
caacaatggggagcacaagttctaattccagaacaattatatagccctcgaagtcaacat
acaatgcatgaaatggggtatgtccctgatgggtctagtaatggcaaagcttcttattct
ggatcaaaagccatgttgagactgacactgagaaggaccccaactgtcgtgagctatacc
catcaaacacagccacccacctggggacagaccaagaagctgtcacagatggcagaagaa
aacctgaggaaagcgggacaaccaatcacaacgagtaatttaatggtagctaccatagcg
gtgatcaccattgccataagtattccttcaacaagggctgccgagaccagctcggtcggg
gagagcctaacctag

>gi568815596r:152020577_152250230|GENSCAN_predicted_peptide_6|90_aa
MGQVRGVVRSILELFHADDEEEGEYNEITEEVTEQVCLPPKAKAAKQGEVHPHPSASPPY
YFEENDPPDLSFLEDTGRKVVAPVTVREVP

>gi568815596r:152020577_152250230|GENSCAN_predicted_CDS_6|273_bp
atgggacaagtgcggggtgtggttcgttccatcttggaactttttcacgctgatgatgag
gaggaaggagagtataacgaaataacagaagaggttacagagcaggtttgtttgccacct
aaagctaaagcggcaaagcagggagaggttcatccccacccttctgcatcccctccctat
tattttgaagaaaatgaccctccagatctttctttcctggaagacactgggcgaaaagta
gttgccccagtgactgttcgagaagtgccttaa

>gi568815596r:152020577_152250230|GENSCAN_predicted_peptide_7|117_aa
MKRNEQSLQEIWDYVKRPNLSDGENGTKLENTLQDIIQENFPNLARQTNIQIQEIQRTPQ
RYSSRRATPRHTIVRFTKVEMEEKMLRAAREKGQVTHKGKPVKLTVDLLAETLQARR

>gi568815596r:152020577_152250230|GENSCAN_predicted_CDS_7|354_bp
atgaaaaggaatgaacaaagcctccaagaaatatgggactatgtgaaaagacctaacctc
agtgatggggagaatggaaccaagttggaaaacactcttcaggatattatccaggagaac
ttccccaacttagcaagacagaccaacattcaaattcaggaaatacagagaacaccacaa
agatactcctcgagaagagcaaccccaagacacacaatcgtcagattcaccaaggttgaa
atggaggaaaaaatgttaagggcagccagagagaaaggtcaggttacccacaaagggaag
cctgtcaaactaacagtggatctcttagcagaaaccctgcaagccagaagatag

>gi568815596r:152020577_152250230|GENSCAN_predicted_peptide_8|301_aa
MNIDAKILNKILVNQIQQHIKKLIHHDQVNFISGMQGWFNTHKSISIIHHINRTNDKNHM
IISIDAGKAFNKIQQHFMLKTLNKLGIDGMYLKIITAIYDKPTANIILNEQKLEAFPLKT
GTRQGCPLSPLLFNVVLEVLARAFGWIKDLNVRLKNIKTLEENLDNTIQDIDMGKDFMIE
TPKAIATKTKIDKWNLIKLRSFCTAKETVIRVNRQPTEWEKIFAIYSSDKGLISRIYKEL
KQIYKKKTNNPIKKWAKDMNRHFSKEDIYVANKHMNHKKAHHHWSLEKCKQNHNETPSHA
S

>gi568815596r:152020577_152250230|GENSCAN_predicted_CDS_8|906_bp
atgaacatcgatgcgaaaatcctcaataaaatactggtaaaccaaatccagcagcacatc
aaaaagcttatccaccacgatcaagtcaacttcatctctgggatgcaaggttggttcaac
acgcacaaatcaataagcataatccatcacataaacagaaccaatgacaaaaaccacatg
attatctcaatagatgcaggaaaggccttcaacaaaattcaacagcacttcatgctaaaa
actctcaataaactaggtattgatggaatgtatctcaaaataataacagctatttatgac
aaacccacagccaatatcatactgaatgagcaaaagctagaagcattccctttgaaaacc
ggcacaagacaaggatgccctctctcaccactcctattcaacgtagtattggaagttctg
gccagggcattcggatggattaaggacttaaacgtgagacttaaaaacataaaaacccta
gaagaaaacctagacaataccattcaggacatagacatgggcaaagatttcatgattgaa
acaccaaaagcaatagcaacaaaaaccaaaattgacaaatggaatctaattaaactaagg
agcttttgcacagcaaaagaaactgtcatcagagtgaacaggcaacctactgaatgggag
aaaatttttgcaatctattcatctgacaaagggctaatatccagaatctacaaagaactt
aaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcaaaggatatgaac
agacacttctcaaaagaagacatttatgtggccaacaaacatatgaatcataaaaaagct
catcatcactggtcattagagaaatgcaaacaaaaccacaatgagacaccatctcatgcc
agttag

>gi568815596r:152020577_152250230|GENSCAN_predicted_peptide_9|80_aa
XSPNSASSITTHTWIAMTLWVARVHLESLPAVEAMTQGPWKGKSLVEEERVGQTTAVMKL
VYSCESGLRPYLGVEGTQLY

>gi568815596r:152020577_152250230|GENSCAN_predicted_CDS_9|243_bp
ngatcccctaattcagcatcatctatcaccacccacacatggatagcaatgactctatgg
gttgccagggttcacttagagagcctacctgctgtggaagccatgacccagggtccctgg
aaaggaaagagcctggtggaggaggaaagagttggccagacaacagccgtaatgaagtta
gtttattcttgtgaatcaggactcaggccatatttgggtgtggagggaacacagctgtat
taa