Result of FASTA (ccds) for pF1KB8599
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8599, 244 aa
  1>>>pF1KB8599 244 - 244 aa - 244 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7799+/-0.000972; mu= 6.0518+/- 0.057
 mean_var=124.9077+/-27.650, 0's: 0 Z-trim(107.5): 145  B-trim: 83 in 1/51
 Lambda= 0.114757
 statistics sampled from 9405 (9588) to 9405 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.295), width:  16
 Scan time:  2.270

The best scores are:                                      opt bits E(32554)
CCDS11220.1 WSB1 gene_id:26118|Hs108|chr17         ( 421) 1626 280.7 1.1e-75
CCDS61252.1 WSB2 gene_id:55884|Hs108|chr12         ( 421)  532 99.5 3.6e-21
CCDS9186.1 WSB2 gene_id:55884|Hs108|chr12          ( 404)  523 98.0 9.9e-21
CCDS11221.1 WSB1 gene_id:26118|Hs108|chr17         ( 275)  515 96.6 1.8e-20


>>CCDS11220.1 WSB1 gene_id:26118|Hs108|chr17              (421 aa)
 initn: 1626 init1: 1626 opt: 1626  Z-score: 1472.3  bits: 280.7 E(32554): 1.1e-75
Smith-Waterman score: 1626; 98.7% identity (99.6% similar) in 238 aa overlap (1-238:1-238)

               10        20        30        40        50        60
pF1KB8 MASFPPRVNEKEIVRLRTIGELLAPAAPFDKKCGRENWTVAFAPDGSYFAWSQGHRTVKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MASFPPRVNEKEIVRLRTIGELLAPAAPFDKKCGRENWTVAFAPDGSYFAWSQGHRTVKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VPWSQCLQNFLLHGTKNVTNSSSLRLPRQNSDGGQKNKPREHIIDCGDIVWSLAFGSSVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VPWSQCLQNFLLHGTKNVTNSSSLRLPRQNSDGGQKNKPREHIIDCGDIVWSLAFGSSVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EKQSRCVNIEWHRFRFGQDQLLLATGLNSGRIKIWDVYTGKLLLNLVDHTGVVRDLTFAP
       ::::::::::::::::::::::::::::.::::::::::::::::::::: :::::::::
CCDS11 EKQSRCVNIEWHRFRFGQDQLLLATGLNNGRIKIWDVYTGKLLLNLVDHTEVVRDLTFAP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 DGSLILVSASRDKTLRVWDLRDDGNMMKVLRGHQNWVYSCAFSPDSSMLCSVGASKAVVA
       ::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::  
CCDS11 DGSLILVSASRDKTLRVWDLKDDGNMMKVLRGHQNWVYSCAFSPDSSMLCSVGASKAVFL
              190       200       210       220       230       240

                                                                   
pF1KB8 AILV                                                        
                                                                   
CCDS11 WNMDKYTMIRKLEGHHHDVVACDFSPDGALLATASYDTRVYIWDPHNGDILMEFGHLFPP
              250       260       270       280       290       300

>>CCDS61252.1 WSB2 gene_id:55884|Hs108|chr12              (421 aa)
 initn: 773 init1: 440 opt: 532  Z-score: 493.5  bits: 99.5 E(32554): 3.6e-21
Smith-Waterman score: 702; 52.8% identity (72.0% similar) in 218 aa overlap (23-238:30-238)

                      10        20          30        40        50 
pF1KB8        MASFPPRVNEKEIVRLRTIGELLAPAAP--FDKKCGRENWTVAFAPDGSYFAW
                                    : :. :  :: : . :.:.:::.::::.:::
CCDS61 MRVDRESRFLRGTGTGEAVAVEEPLLLAELKPGRPHQFDWKSSCETWSVAFSPDGSWFAW
               10        20        30        40        50        60

              60        70        80        90       100       110 
pF1KB8 SQGHRTVKLVPWSQCLQNFLLHGTKNVTNSSSLRLPRQNSDGGQKNKPREHIIDCGDIVW
       ::::  :::.::    : :. .: .  . ::      .:   : ...:.:. .:::.:::
CCDS61 SQGHCIVKLIPWPLEEQ-FIPKGFEAKSRSS------KNETKG-RGSPKEKTLDCGQIVW
               70         80        90              100       110  

             120       130       140       150       160       170 
pF1KB8 SLAFGSSVPEKQSRCVNIEWHRFRFGQDQLLLATGLNSGRIKIWDVYTGKLLLNLVDHTG
       .::: :  :   :: .  . :      . :.::::::.:.::::.: :: :::::  :  
CCDS61 GLAF-SPWPSPPSRKLWARHHPQVPDVSCLVLATGLNDGQIKIWEVQTGLLLLNLSGHQD
             120       130       140       150       160       170 

             180       190       200       210       220       230 
pF1KB8 VVRDLTFAPDGSLILVSASRDKTLRVWDLRDDGNMMKVLRGHQNWVYSCAFSPDSSMLCS
       :::::.:.:.:::::::::::::::.:::   :....:: :: .::: :..::: :::::
CCDS61 VVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLCS
             180       190       200       210       220       230 

             240                                                   
pF1KB8 VGASKAVVAAILV                                               
       ... :.:                                                     
CCDS61 AAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTNVIMWDPYTGERL
             240       250       260       270       280       290 

>>CCDS9186.1 WSB2 gene_id:55884|Hs108|chr12               (404 aa)
 initn: 773 init1: 440 opt: 523  Z-score: 485.7  bits: 98.0 E(32554): 9.9e-21
Smith-Waterman score: 702; 52.8% identity (72.0% similar) in 218 aa overlap (23-238:13-221)

               10        20          30        40        50        
pF1KB8 MASFPPRVNEKEIVRLRTIGELLAPAAP--FDKKCGRENWTVAFAPDGSYFAWSQGHRTV
                             : :. :  :: : . :.:.:::.::::.:::::::  :
CCDS91           MEAGEEPLLLAELKPGRPHQFDWKSSCETWSVAFSPDGSWFAWSQGHCIV
                         10        20        30        40        50

       60        70        80        90       100       110        
pF1KB8 KLVPWSQCLQNFLLHGTKNVTNSSSLRLPRQNSDGGQKNKPREHIIDCGDIVWSLAFGSS
       ::.::    : :. .: .  . ::      .:   : ...:.:. .:::.:::.::: : 
CCDS91 KLIPWPLEEQ-FIPKGFEAKSRSS------KNETKG-RGSPKEKTLDCGQIVWGLAF-SP
               60         70               80        90        100 

      120       130       140       150       160       170        
pF1KB8 VPEKQSRCVNIEWHRFRFGQDQLLLATGLNSGRIKIWDVYTGKLLLNLVDHTGVVRDLTF
        :   :: .  . :      . :.::::::.:.::::.: :: :::::  :  :::::.:
CCDS91 WPSPPSRKLWARHHPQVPDVSCLVLATGLNDGQIKIWEVQTGLLLLNLSGHQDVVRDLSF
             110       120       130       140       150       160 

      180       190       200       210       220       230        
pF1KB8 APDGSLILVSASRDKTLRVWDLRDDGNMMKVLRGHQNWVYSCAFSPDSSMLCSVGASKAV
       .:.:::::::::::::::.:::   :....:: :: .::: :..::: :::::... :.:
CCDS91 TPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLCSAAGEKSV
             170       180       190       200       210       220 

      240                                                          
pF1KB8 VAAILV                                                      
                                                                   
CCDS91 FLWSMRSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTNVIMWDPYTGERLRSLHHTQ
             230       240       250       260       270       280 

>>CCDS11221.1 WSB1 gene_id:26118|Hs108|chr17              (275 aa)
 initn: 515 init1: 515 opt: 515  Z-score: 480.8  bits: 96.6 E(32554): 1.8e-20
Smith-Waterman score: 515; 97.5% identity (98.7% similar) in 79 aa overlap (160-238:14-92)

     130       140       150       160       170       180         
pF1KB8 EWHRFRFGQDQLLLATGLNSGRIKIWDVYTGKLLLNLVDHTGVVRDLTFAPDGSLILVSA
                                     ::::::::::: ::::::::::::::::::
CCDS11                  MASFPPRVNEKEIGKLLLNLVDHTEVVRDLTFAPDGSLILVSA
                                10        20        30        40   

     190       200       210       220       230       240         
pF1KB8 SRDKTLRVWDLRDDGNMMKVLRGHQNWVYSCAFSPDSSMLCSVGASKAVVAAILV     
       :::::::::::.:::::::::::::::::::::::::::::::::::::           
CCDS11 SRDKTLRVWDLKDDGNMMKVLRGHQNWVYSCAFSPDSSMLCSVGASKAVFLWNMDKYTMI
            50        60        70        80        90       100   

CCDS11 RKLEGHHHDVVACDFSPDGALLATASYDTRVYIWDPHNGDILMEFGHLFPPPTPIFAGGA
           110       120       130       140       150       160   




244 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:39:05 2016 done: Fri Nov  4 13:39:05 2016
 Total Scan time:  2.270 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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