GENSCAN 1.0	Date run:  4-Nov-116	Time: 13:38:57

Sequence gi568815593f:57114131_57362749 : 248619 bp : 41.63% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  34161  34199   39  2  0   75   92    31 0.859   2.44
 1.02 Term +  36047  36262  216  1  0   72   39   219 0.871  11.56
 1.03 PlyA +  37698  37703    6                               1.05

 2.00 Prom +  53084  53123   40                              -2.95
 2.01 Init +  59127  59565  439  2  1   29   41   497 0.742  33.42
 2.02 Intr +  59915  60081  167  0  2  -13   87   138 0.436   2.36
 2.03 Intr +  61073  61177  105  1  0   70   38    75 0.084   0.19
 2.04 Intr + 116716 116839  124  0  1   60   83   149 0.800  10.84
 2.05 Intr + 116968 117191  224  2  2   15   78   187 0.983   7.32
 2.06 Intr + 121836 121893   58  2  1   60   89    53 0.506   0.14
 2.07 Intr + 132170 132354  185  0  2   66  106   118 0.942   9.99
 2.08 Intr + 132945 133085  141  2  0   85   64    64 0.908   3.33
 2.09 Intr + 135279 135446  168  2  0   60   86   224 0.988  18.62
 2.10 Intr + 145962 146020   59  2  2   84   77   -29 0.051  -7.64
 2.11 Intr + 147050 147152  103  2  1  110  110   108 0.689  14.46
 2.12 Term + 148464 148622  159  2  0   58   49   166 0.950   6.66
 2.13 PlyA + 148928 148933    6                               1.05

 3.03 PlyA - 149307 149302    6                               1.05
 3.02 Term - 169819 169568  252  1  0   63   49   142 0.636   2.45
 3.01 Init - 170079 169966  114  0  0   40   96   137 0.820   9.96
 3.00 Prom - 173738 173699   40                              -4.05

 4.00 Prom + 175079 175118   40                              -9.35
 4.01 Init + 177423 177517   95  2  2   49   94   101 0.387   6.70
 4.02 Intr + 184865 185006  142  2  1   66   55    83 0.041   2.23
 4.03 Intr + 194758 195010  253  0  1    2   60   181 0.011   2.78
 4.04 Term + 195160 195725  566  2  2   50   34   291 0.074  13.47
 4.05 PlyA + 196473 196478    6                               1.05

 5.00 Prom + 197286 197325   40                              -7.85
 5.01 Init + 199268 199427  160  1  1   65   37   182 0.461  10.83
 5.02 Term + 200278 200456  179  2  2   78   43   100 0.699   1.37
 5.03 PlyA + 203188 203193    6                               1.05

 6.02 PlyA - 203638 203633    6                               1.05
 6.01 Sngl - 204498 203953  546  0  0   44   44   400 0.485  27.05
 6.00 Prom - 204641 204602   40                             -13.87

 7.03 PlyA - 204765 204760    6                              -3.74
 7.02 Term - 205638 205130  509  1  2   12   48   450 0.907  26.98
 7.01 Init - 205890 205665  226  0  1   79    4   208 0.460  10.18
 7.00 Prom - 206349 206310   40                              -6.85

 8.05 PlyA - 207953 207948    6                               1.05
 8.04 Term - 214180 213979  202  0  1   70   43   134 0.083   2.98
 8.03 Intr - 220511 220433   79  0  1  105   42    67 0.039   1.49
 8.02 Intr - 232881 232688  194  2  2   61   95    90 0.256   5.21
 8.01 Init - 241145 239962 1184  2  2   77   72   520 0.058  42.15
 8.00 Prom - 241636 241597   40                             -11.44

 9.02 PlyA - 242077 242072    6                               1.05
 9.01 Sngl - 242490 242101  390  0  0   88   54   424 0.686  34.97

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr - 189599 189434  166  1  1   14   75   213 0.881  11.64


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593f:57114131_57362749|GENSCAN_predicted_peptide_1|84_aa
MVADFPVGAVLMIACGEYYCRCLLKAQGLFSQLVVNAARTGIHHSGQWAPLWPRADPEIP
SKSQNLELGTPRARLVLYLTGRGR

>gi568815593f:57114131_57362749|GENSCAN_predicted_CDS_1|255_bp
atggtggcagatttcccagttggtgctgttctcatgatagcctgtggggagtactactgc
cgatgtttacttaaggcccaagggctcttcagtcagcttgtggtgaatgctgccaggact
ggtatccatcattcagggcagtgggctcccctctggcccagggcagatccagaaatacca
tccaagagccaaaacctggaactggggaccccaagagctcgcttggtgctttacctcact
gggaggggaagataa

>gi568815593f:57114131_57362749|GENSCAN_predicted_peptide_2|643_aa
MPRWSIPSACPTAPAPARQMFRLRRAEHRRRVSADSPRPEREAQAGYPAKGVRRSVFRSL
KLGGAAAQLRELRAGEDAAARATRACAAASRRSTPLSPSAQPHQPGLRGSPGRGEVREEG
LLRERRGIPPSTERSRLFTVLTSAAGDLAQNIADRVGAILGLRLVVGEGKAAKGDYSKYR
KPSPGIRRGGTPRPGAPLVGQKVKSALALHNTVTYRFSLPLLRCLVHSVDFYRVLAWSSL
NFEKHSENFAWTENRYDVNRRRHNSSDGFDSAIGRPNGGNFGRKEKNGWRTHGRNGTENI
NHRGGYHGGSSRSRSSIFHAGKSQGLHENNIPDNETGRKEDKRERKQFEAEDFPSLNPEY
EREPNHNKSLAAEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSV
YKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVK
ECNRSNSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKMMW
AHIEWKLFNFNFSFRIILLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKN
GILKNGLICDFKFGPWKNSTFKPTTENDDTETSSSDTSDDDDV

>gi568815593f:57114131_57362749|GENSCAN_predicted_CDS_2|1932_bp
atgccacggtggagcatcccctcagcgtgccctaccgctccggcgccggctcggcagatg
ttccgcctgcgcagagctgagcataggcgccgtgtgagcgccgattcacccaggcccgag
cgcgaggcccaagcggggtacccggcgaagggcgtgcgccgcagcgtcttccgcagcttg
aagctcggaggagctgcggcgcagcttcgggagcttagagctggggaagacgctgcggcg
cgcgccactcgagcctgcgcggccgcttcccggcgcagcacccccctctcgccctctgcg
cagccccaccagcccggactccgaggcagccccggacggggggaggtgcgggaggagggg
ctcctcagggagcggcggggaattcccccttccaccgaacgttcccgattgttcaccgtc
ctcacgtcagcagcaggggacttggcccagaacattgcggatcgggtcggcgccattttg
ggactgagactggttgtgggggagggaaaagcggcaaaaggggattattcaaagtaccga
aaaccttctcccgggatcaggcgcggcggcacccccaggccaggggcacctctggtgggg
cagaaggtgaaatctgcccttgccctccataataccgtcacctaccgtttttccctccct
ctactccgatgtcttgttcattcagtagacttttatcgggtgcttgcttggtcgtcattg
aattttgagaagcattctgaaaactttgcatggacagagaatcgttatgatgtgaaccgt
cgacgacacaactcttcagatggctttgattctgctattgggcgtcctaatggaggtaac
tttggaaggaaagaaaaaaatggatggcgtacacatggaagaaatggtacagaaaacata
aatcatcgaggtggataccatggtggaagttcccgttctcgtagcagtattttccatgca
ggaaaaagccaaggactacatgaaaacaacatacctgacaatgaaaccgggaggaaagaa
gacaagagagaacgcaaacagtttgaagctgaggattttccgtctttaaatcctgagtat
gagagagaaccaaatcacaataagtctttagctgcagaatatcctccgaatcctaaatct
agagctccaaggatgctggtcattaagaaaggtaatacaaaagacttacagctatctgga
ttcccagtagtaggaaatcttccgtcacagccagttaagaatggaactggtccaagtgtt
tataaaggtttagtccctaaacctgctgctccacctacaaaacctacacaatggaaaagc
caaacaaaagaaaataaagttggaacttctttccctcatgagtccacatttggcgttggc
aactttaatgcttttaaatcaactgccaagaactttagtccatctacaaattcagtgaaa
gagtgtaatcgctcaaattcctcttctcctgttgacaaacttaatcagcagcctcgtcta
accaaactgacacgaatgcgcactgataagaagagtgaatttttgaaagcattgaaaaga
gacagagtagaagaggaacatgaagatgaaagccgtgctggctcagagaagatgatgtgg
gcacacattgagtggaaattattcaactttaatttttcattcagaatcatattgttaaag
gaaatgggctggcaggaagacagtgaaaatgatgaaacatgtgctcccttaactgaggat
gaaatgagagaattccaagttattagtgaacagttacagaagaatggtctgagaaaaaat
ggtattttgaaaaatggcttgatctgtgacttcaagtttggaccgtggaagaacagcact
ttcaaacccacaactgagaatgatgacacagagacaagtagcagtgatacatcagatgac
gacgatgtgtga

>gi568815593f:57114131_57362749|GENSCAN_predicted_peptide_3|121_aa
MAYVQGPGAQGPGALQSADGKARQAYALLKAANSLRPQIREPPPMITTNTGPKGVLPGYH
QCPLKVQVPFSQLVVNAAWPGTHLDGNGSSLVQGSSRNPIQESSPGIKDLQELICVLLPR
G

>gi568815593f:57114131_57362749|GENSCAN_predicted_CDS_3|366_bp
atggcctatgttcaaggccctggagctcaaggtcctggggctctacaatcagcagatggc
aaagccagacaggcctatgctctccttaaggcagcgaattccctcaggccccagataagg
gagcctcccccaatgattaccaccaacactggcccaaagggagtactgccaggctaccac
caatgtccccttaaggtccaagtgcctttcagtcagcttgtggtgaatgctgcctggcct
gggactcaccttgatggcaatggctcctctctggtccagggcagttccagaaatcccatc
caagagtcaagtcctggaatcaaagacctccaagagctcatttgtgttctactcccccgt
ggctga

>gi568815593f:57114131_57362749|GENSCAN_predicted_peptide_4|351_aa
MGSGRGGAYAEGGLAKAGGAEGLRRVNLQGSSDSQEMILFGEAEKKRKETNQGVLNFFNK
KRTLGGSKPLFGGASAQNLRFVELELERDDLGYLAEEISKQQSIQEVTWVLLKAFSFNRE
AEHESLENLKPDNVIENKIPFSEEKFKLAADICISNKELNVNQAAPAMAERGQYRAWAMV
SEGESPNPWQLPHGVEPGGAKKSRIGVWEPPPRFQKMYGNAWMPREKFAAGAGTPWRTSA
RTMQKGNVGLEPLHRVPTGALCSGAVRRGPPSSRPQNGRSTYNLHCVPGKAADTQHQPMK
AAGRESVPCKATGAELSKAMGTYLLQQCDLDVRPLFLPSLRYVFISSMKTN

>gi568815593f:57114131_57362749|GENSCAN_predicted_CDS_4|1056_bp
atgggatcgggcagaggaggagcctatgcagagggtgggctggcaaaagcagggggtgca
gagggcctgagaagagtgaacctgcagggcagcagtgacagtcaagagatgattctcttt
ggagaggctgagaagaaaaggaaagagactaatcagggtgtgttaaacttttttaataaa
aaacgaacactagggggcagcaaaccactgttcggaggagcgtctgcacaaaatttaaga
tttgtggaacttgaacttgagagagatgatttagggtatttggcagaagaaatttctaag
cagcaaagcattcaagaggtgacttgggtgctattaaaggcattcagttttaatagggaa
gcagagcatgaaagtttggaaaatttgaagcctgacaatgtgatagaaaataaaatccca
ttttctgaggagaaattcaaactggctgcagatatttgcataagtaacaaggagctgaat
gttaatcaggctgctccagctatggctgaaaggggccaatatagagcttgggccatggtt
tcagagggtgaaagccccaacccttggcagcttccacatggtgttgagcctgggggtgca
aagaagtcaagaattggggtttgggaacctccacctagatttcagaagatgtatggaaat
gcctggatgcccagagagaagtttgctgcaggggcagggacaccgtggagaacctctgct
aggacaatgcagaagggaaatgtggggttggagcccctacacagagtccctactggggca
ctgtgtagtggagctgtgagaagagggccaccatcctccagaccccagaatggtagatcc
acctacaacttgcactgtgtgcctggaaaagccgcagacactcaacaccagcccatgaaa
gcagctgggagggagtctgtaccctgcaaagccacaggggcagagctgtccaaggccatg
ggaacctacctcttgcagcagtgtgacttggatgtgagacctctttttcttcccagtctc
aggtatgtctttattagtagcatgaaaacgaactaa

>gi568815593f:57114131_57362749|GENSCAN_predicted_peptide_5|112_aa
MKMGDGATTSQGMPKTAGNHQKKLGRDKKDFPPGFRKSMALPTPSSETSSPQNSPLMMSV
GIGRVLRTLAWLMDVLHPLTAVARNPNGAQTVLPGMDGEALGEKALSSHWYC

>gi568815593f:57114131_57362749|GENSCAN_predicted_CDS_5|339_bp
atgaagatgggagatggtgcaactacaagccaaggaatgccgaagactgctggcaaccac
cagaagaagctaggaagagacaagaaggatttccctccaggtttcagaaagagtatggct
ctgccaacaccttcctctgagacttctagcccccagaactcccctttaatgatgagtgtg
gggataggcagggtgctcaggaccctggcttggctaatggatgtgttgcatcctctgaca
gcagtggcacggaacccaaacggagcccaaacggttcttcctggaatggatggagaggca
ctgggagagaaagcgctttcttcccactggtactgctaa

>gi568815593f:57114131_57362749|GENSCAN_predicted_peptide_6|181_aa
MSVLNMVVRHDPGSTESAKAKEELIFRCRSRHFRASPLFSQHAAADKHKFQRFLTADMAL
AVTVYAPTTFPPSSLLLFKQKSNGMHNLIATGHLLLVDPNRMVIKRVVLSDPPFKICTKM
AVVCYMFFNREDVQWFKPVELRTKWSRRGHIQEPSGTHGRMKCSFDRKLKSQNTELMNLY
K

>gi568815593f:57114131_57362749|GENSCAN_predicted_CDS_6|546_bp
atgtcagtattgaatatggtggtgaggcatgaccctggcagcactgaatctgcgaaagcc
aaggaggagctcatattccgctgtagatccaggcacttccgagcctcacctttattctct
cagcatgctgcagcagacaaacataaatttcagagattcctgactgctgatatggccctg
gcggtgacagtatacgcaccaaccacttttcctccttcatctttgctgcttttcaagcag
aaaagcaatggaatgcacaatctcattgctacaggccatcttttgctggtggatccaaac
agaatggtcatcaagagagttgtcctgagtgatcctcctttcaaaatttgtactaagatg
gcagtggtatgttacatgttcttcaatagagaggatgtgcagtggtttaaaccagtagaa
ctgagaacaaagtggagccgcagaggacacatccaggagccttcaggtacccatggccgc
atgaagtgcagctttgataggaagctaaaatctcagaacacagaactgatgaacctttac
aaatga

>gi568815593f:57114131_57362749|GENSCAN_predicted_peptide_7|244_aa
MAAHHSSPLKMQNKAHKSGQHRGRGSAQQDGKGHLALKTLSKKVRKELSRVDQRHSASQL
QKQKKEVVLAEKRQLALAVQGLSGLPLKKQIDARKKLSKAVEKHFLDDKLLLLDTQQEAG
MLLRQLANQKQWHLAFRDQQAYLFAHTADFVPSEENNLVGTLEISGYVRGQTLNVNRLLH
ITGRGDFQMKHIDDPMDPFPLNPTVIKSQKDPDMAIEICAMDTVDDMEEDLKVLMKADPA
RQES

>gi568815593f:57114131_57362749|GENSCAN_predicted_CDS_7|735_bp
atggcagcccaccactccagcccactcaagatgcagaataaagctcataaaagtgggcag
catcggggtcggggatctgcacagcaggatggcaagggccatctagcactgaaaacccta
agcaagaaggtgagaaaagaactcagcagagtagaccagaggcattccgccagtcagctc
caaaagcagaagaaggaggtggttctggcggagaagagacagctggcactagctgtccag
ggattatctggcctcccactgaagaaacaaatagatgccagaaagaagctaagtaaagca
gtggagaagcactttctggatgacaaactcctcttgttagacactcaacaggaggcaggg
atgctgcttaggcagttggctaaccagaagcaatggcatcttgcttttcgagatcagcag
gcctacctatttgcccatactgctgattttgttcctagtgaagagaataatttggtgggc
accttggaaatttcaggctatgttcgtgggcagactctgaatgtaaataggttgctgcat
atcactggacgtggtgatttccagatgaaacacatagatgaccccatggaccctttccct
ttaaatcctacagtaattaaatcccaaaaggacccagacatggcaatagagatttgtgct
atggatactgtcgatgatatggaagaagaccttaaagtcctaatgaaggcagatcctgct
agacaggaatcctga

>gi568815593f:57114131_57362749|GENSCAN_predicted_peptide_8|552_aa
MNRDKEGHYIMVKGSVQQEELTIPNIYAPNTGAPILIKQVLSDLQGHLDSHTLIMGDFNT
PLSTLDRSTRQKANKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHTYSKIDHIL
GSKALLSKCKRTEIITNYLSDHSAIKLELRIKNLTQNRSTTWKLNNLLLNDYWVHNEMKA
EIKMFFETNENKDTTYQNLWDAFKAVCRGKFIALNAHKRKQERSKIDTLTSQLKELEKQE
QTHSKASRRQEITKIRAELKEIETQKTLQKINESRSWFFERINKIDRPLARLIKKKREKN
LIDAIKNDKGDITTDPTEIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVES
LNRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQRHTVSILISYCQGGSLMSQVYWNQQE
KPPSSSNAPPGLSVNKAQHRHVCCRGEMLKRVQVHYVRAVSCVWPHHPAVRRDVVRGGQP
PAQTAGPLHSGDQLTLPGLVTHDSTGPEASTQKLTQCKRTIFHTSMISSPTNQHFPFPLP
LPAKLSLKNPSL

>gi568815593f:57114131_57362749|GENSCAN_predicted_CDS_8|1659_bp
atgaacagagacaaagaaggccattacataatggtaaagggatcagttcaacaagaagag
ctaactatcccaaatatatatgcacccaatacaggagcaccaatattgataaagcaagtc
ctgagtgacctacaaggacacttagactcccacacattaataatgggagactttaacaca
ccactgtcaacattagacagatcaacaagacagaaagccaacaaggatacccaggaattg
aactcagctctgcaccaagcagacctaatagacatctacagaactctccaccccaaatca
acagaatatacatttttttcagcaccacaccacacctattccaaaattgaccacatactt
ggaagtaaagctctcctcagcaaatgtaaaagaacagaaattataacaaactatctctca
gaccacagtgcaatcaaactagaactcaggattaagaatctcactcaaaaccgctcaact
acatggaaactgaacaacctgctcctgaatgactactgggtacataacgaaatgaaggca
gaaataaagatgttctttgaaaccaacgagaacaaagacacaacataccagaatctctgg
gacgcattcaaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaag
caggaaagatccaaaattgacaccctaacatcacaattgaaagaactagaaaagcaagag
caaacacattcaaaagctagcagaaggcaagaaataactaaaatcagagcagaactgaag
gaaatagagacacaaaaaacccttcaaaaaattaatgaatccaggagctggttttttgaa
aggatcaacaaaattgatagaccgctagcaagactaataaagaaaaaaagagagaagaat
ctaatagatgcaataaaaaatgataaaggggatatcaccaccgatcccacagaaatacaa
actaccatcagagaatactacaaacacctctacgcaaataaactagaaaatctagaagaa
atggataaattcctcgacacatacactctcccaagactgaaccaggaagaagttgaatct
ctgaatagaccaataacaggatctgaaattgtggcaataatcaatagcttaccaaccaaa
aagagtccaggaccagatggattcacagccgaattctaccagaggcacacagtatcaata
ctcatcagctattgtcagggtggaagcctgatgagccaagtatactggaaccagcaagag
aaacccccttcctccagcaacgcccctccagggctctctgttaacaaagctcagcatcgt
catgtttgctgcagaggagaaatgctaaaaagggtccaggttcattatgtcagagcagtc
tcctgtgtttggccacatcatccagcagtcagaagggatgtggtccgtggaggtcagccc
ccagcacagacagcaggacctttgcattctggtgaccagctgactctacctggactggtg
actcatgactcaaccggtcctgaggcctccacccagaagctgactcagtgcaagaggacc
attttccacacctctatgatttcatccccaaccaatcagcattttccattccctctccct
cttcctgccaaactatctttgaaaaaccctagcctctga

>gi568815593f:57114131_57362749|GENSCAN_predicted_peptide_9|129_aa
MGKKQNRKTGNSRKQSASPPPKEHSSSPATEQSWMENDFDELREEGFRRSNYSELREDIQ
TKGKEVENFEKNLEECITRITNTEKCLKELMELKTKARELREECRSLRSRCDQLEERVSA
MEDEMNEMK

>gi568815593f:57114131_57362749|GENSCAN_predicted_CDS_9|390_bp
atggggaaaaaacagaacagaaaaactggaaactctagaaagcagagcgcctctcctcct
ccaaaggaacacagttcctcaccagcaacggaacaaagctggatggagaatgactttgac
gagctgagagaagaaggcttcagacgatcaaattactctgagctacgggaggacattcaa
accaaaggcaaagaagttgaaaactttgaaaaaaatttagaagaatgtataactagaata
accaatacagagaagtgcttaaaggagctgatggagctgaaaaccaaggctcgagaacta
cgtgaagaatgcagaagcctcaggagccgatgtgatcaactggaagaaagggtatcagca
atggaagatgaaatgaatgaaatgaagtga