Result of FASTA (ccds) for pF1KB8577
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8577, 854 aa
  1>>>pF1KB8577 854 - 854 aa - 854 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1739+/-0.000961; mu= 16.7851+/- 0.058
 mean_var=82.0837+/-16.195, 0's: 0 Z-trim(106.1): 15  B-trim: 16 in 1/48
 Lambda= 0.141562
 statistics sampled from 8774 (8785) to 8774 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.27), width:  16
 Scan time:  4.100

The best scores are:                                      opt bits E(32554)
CCDS3954.1 PARP8 gene_id:79668|Hs108|chr5          ( 854) 5679 1170.1       0
CCDS82996.1 PARP8 gene_id:79668|Hs108|chr5         ( 833) 5471 1127.6       0
CCDS54849.1 PARP8 gene_id:79668|Hs108|chr5         ( 812) 3701 766.1       0
CCDS10241.2 PARP6 gene_id:56965|Hs108|chr15        ( 630) 1955 409.5 9.5e-114


>>CCDS3954.1 PARP8 gene_id:79668|Hs108|chr5               (854 aa)
 initn: 5679 init1: 5679 opt: 5679  Z-score: 6263.9  bits: 1170.1 E(32554):    0
Smith-Waterman score: 5679; 100.0% identity (100.0% similar) in 854 aa overlap (1-854:1-854)

               10        20        30        40        50        60
pF1KB8 MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYVGGPRSVSYSVHVSEDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYVGGPRSVSYSVHVSEDY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PDNTYVSSSENDEDVLVTTEPIPVIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 PDNTYVSSSENDEDVLVTTEPIPVIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 STVEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAIDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 STVEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAIDD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VDIDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 VDIDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GHQLKKIMQTFVTQQWKQSKEKSNCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 GHQLKKIMQTFVTQQWKQSKEKSNCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCVTKSHRTFGRSLSSDPRAEQAMTAIKSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCVTKSHRTFGRSLSSDPRAEQAMTAIKSH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 KLLNRPCPAAVKSEECLTLKSHRLLTRSCSGDPRCEHNTNLKPHKLLSRSYSSNLRMEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 KLLNRPCPAAVKSEECLTLKSHRLLTRSCSGDPRCEHNTNLKPHKLLSRSYSSNLRMEEL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 YGLKNHKLLSKSYSSAPKSSKTELFKEPNAEGRRLSLTSGLIGILTPSSSSSSQLAPNGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 YGLKNHKLLSKSYSSAPKSSKTELFKEPNAEGRRLSLTSGLIGILTPSSSSSSQLAPNGA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 KCIPVRDRGFLVQTIEFAEQRIPVLNEYCVVCDEPHVFQNGPMLRPTVCERELCVFAFQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 KCIPVRDRGFLVQTIEFAEQRIPVLNEYCVVCDEPHVFQNGPMLRPTVCERELCVFAFQT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 LGVMNEAADEIATGAQVVDLLVSMCRSALESPRKVVIFEPYPSVVDPNDPQMLAFNPRKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 LGVMNEAADEIATGAQVVDLLVSMCRSALESPRKVVIFEPYPSVVDPNDPQMLAFNPRKK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 NYDRVMKALDSITSIREMTQAPYLEIKKQMDKQDPLAHPLLQWVISSNRSHIVKLPVNRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 NYDRVMKALDSITSIREMTQAPYLEIKKQMDKQDPLAHPLLQWVISSNRSHIVKLPVNRQ
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB8 LKFMHTPHQFLLLSSPPAKESNFRAAKKLFGSTFAFHGSHIENWHSILRNGLVVASNTRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 LKFMHTPHQFLLLSSPPAKESNFRAAKKLFGSTFAFHGSHIENWHSILRNGLVVASNTRL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB8 QLHGAMYGSGIYLSPMSSISFGYSGMNKKQKVSAKDEPASSSKSSNTSQSQKKGQQSQFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 QLHGAMYGSGIYLSPMSSISFGYSGMNKKQKVSAKDEPASSSKSSNTSQSQKKGQQSQFL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB8 QSRNLKCIALCEVITSSDLHKHGEIWVVPNTDHVCTRFFFVYEDGQVGDANINTQEGGIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 QSRNLKCIALCEVITSSDLHKHGEIWVVPNTDHVCTRFFFVYEDGQVGDANINTQEGGIH
              790       800       810       820       830       840

              850    
pF1KB8 KEILRVIGNQTATG
       ::::::::::::::
CCDS39 KEILRVIGNQTATG
              850    

>>CCDS82996.1 PARP8 gene_id:79668|Hs108|chr5              (833 aa)
 initn: 5471 init1: 5471 opt: 5471  Z-score: 6034.5  bits: 1127.6 E(32554):    0
Smith-Waterman score: 5471; 99.9% identity (99.9% similar) in 825 aa overlap (30-854:9-833)

               10        20        30        40        50        60
pF1KB8 MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYVGGPRSVSYSVHVSEDY
                                    : :::::::::::::::::::::::::::::
CCDS82                      MEPAALRCAYFRYSDSTFTFTYVGGPRSVSYSVHVSEDY
                                    10        20        30         

               70        80        90       100       110       120
pF1KB8 PDNTYVSSSENDEDVLVTTEPIPVIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PDNTYVSSSENDEDVLVTTEPIPVIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN
      40        50        60        70        80        90         

              130       140       150       160       170       180
pF1KB8 STVEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAIDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 STVEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAIDD
     100       110       120       130       140       150         

              190       200       210       220       230       240
pF1KB8 VDIDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VDIDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL
     160       170       180       190       200       210         

              250       260       270       280       290       300
pF1KB8 GHQLKKIMQTFVTQQWKQSKEKSNCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GHQLKKIMQTFVTQQWKQSKEKSNCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS
     220       230       240       250       260       270         

              310       320       330       340       350       360
pF1KB8 KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCVTKSHRTFGRSLSSDPRAEQAMTAIKSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCVTKSHRTFGRSLSSDPRAEQAMTAIKSH
     280       290       300       310       320       330         

              370       380       390       400       410       420
pF1KB8 KLLNRPCPAAVKSEECLTLKSHRLLTRSCSGDPRCEHNTNLKPHKLLSRSYSSNLRMEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KLLNRPCPAAVKSEECLTLKSHRLLTRSCSGDPRCEHNTNLKPHKLLSRSYSSNLRMEEL
     340       350       360       370       380       390         

              430       440       450       460       470       480
pF1KB8 YGLKNHKLLSKSYSSAPKSSKTELFKEPNAEGRRLSLTSGLIGILTPSSSSSSQLAPNGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 YGLKNHKLLSKSYSSAPKSSKTELFKEPNAEGRRLSLTSGLIGILTPSSSSSSQLAPNGA
     400       410       420       430       440       450         

              490       500       510       520       530       540
pF1KB8 KCIPVRDRGFLVQTIEFAEQRIPVLNEYCVVCDEPHVFQNGPMLRPTVCERELCVFAFQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KCIPVRDRGFLVQTIEFAEQRIPVLNEYCVVCDEPHVFQNGPMLRPTVCERELCVFAFQT
     460       470       480       490       500       510         

              550       560       570       580       590       600
pF1KB8 LGVMNEAADEIATGAQVVDLLVSMCRSALESPRKVVIFEPYPSVVDPNDPQMLAFNPRKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LGVMNEAADEIATGAQVVDLLVSMCRSALESPRKVVIFEPYPSVVDPNDPQMLAFNPRKK
     520       530       540       550       560       570         

              610       620       630       640       650       660
pF1KB8 NYDRVMKALDSITSIREMTQAPYLEIKKQMDKQDPLAHPLLQWVISSNRSHIVKLPVNRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NYDRVMKALDSITSIREMTQAPYLEIKKQMDKQDPLAHPLLQWVISSNRSHIVKLPVNRQ
     580       590       600       610       620       630         

              670       680       690       700       710       720
pF1KB8 LKFMHTPHQFLLLSSPPAKESNFRAAKKLFGSTFAFHGSHIENWHSILRNGLVVASNTRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LKFMHTPHQFLLLSSPPAKESNFRAAKKLFGSTFAFHGSHIENWHSILRNGLVVASNTRL
     640       650       660       670       680       690         

              730       740       750       760       770       780
pF1KB8 QLHGAMYGSGIYLSPMSSISFGYSGMNKKQKVSAKDEPASSSKSSNTSQSQKKGQQSQFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 QLHGAMYGSGIYLSPMSSISFGYSGMNKKQKVSAKDEPASSSKSSNTSQSQKKGQQSQFL
     700       710       720       730       740       750         

              790       800       810       820       830       840
pF1KB8 QSRNLKCIALCEVITSSDLHKHGEIWVVPNTDHVCTRFFFVYEDGQVGDANINTQEGGIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 QSRNLKCIALCEVITSSDLHKHGEIWVVPNTDHVCTRFFFVYEDGQVGDANINTQEGGIH
     760       770       780       790       800       810         

              850    
pF1KB8 KEILRVIGNQTATG
       ::::::::::::::
CCDS82 KEILRVIGNQTATG
     820       830   

>>CCDS54849.1 PARP8 gene_id:79668|Hs108|chr5              (812 aa)
 initn: 3697 init1: 3697 opt: 3701  Z-score: 4081.0  bits: 766.1 E(32554):    0
Smith-Waterman score: 5300; 95.1% identity (95.1% similar) in 854 aa overlap (1-854:1-812)

               10        20        30        40        50        60
pF1KB8 MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYVGGPRSVSYSVHVSEDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYVGGPRSVSYSVHVSEDY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PDNTYVSSSENDEDVLVTTEPIPVIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PDNTYVSSSENDEDVLVTTEPIPVIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 STVEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAIDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 STVEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAIDD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VDIDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VDIDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GHQLKKIMQTFVTQQWKQSKEKSNCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GHQLKKIMQTFVTQQWKQSKEKSNCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCVTKSHRTFGRSLSSDPRAEQAMTAIKSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCVTKSHRTFGRSLSSDPRAEQAMTAIKSH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 KLLNRPCPAAVKSEECLTLKSHRLLTRSCSGDPRCEHNTNLKPHKLLSRSYSSNLRMEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KLLNRPCPAAVKSEECLTLKSHRLLTRSCSGDPRCEHNTNLKPHKLLSRSYSSNLRMEEL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 YGLKNHKLLSKSYSSAPKSSKTELFKEPNAEGRRLSLTSGLIGILTPSSSSSSQLAPNGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YGLKNHKLLSKSYSSAPKSSKTELFKEPNAEGRRLSLTSGLIGILTPSSSSSSQLAPNGA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 KCIPVRDRGFLVQTIEFAEQRIPVLNEYCVVCDEPHVFQNGPMLRPTVCERELCVFAFQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KCIPVRDRGFLVQTIEFAEQRIPVLNEYCVVCDEPHVFQNGPMLRPTVCERELCVFAFQT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 LGVMNEAADEIATGAQVVDLLVSMCRSALESPRKVVIFEPYPSVVDPNDPQMLAFNPRKK
       ::::::::::::::::                                          ::
CCDS54 LGVMNEAADEIATGAQ------------------------------------------KK
              550                                                  

              610       620       630       640       650       660
pF1KB8 NYDRVMKALDSITSIREMTQAPYLEIKKQMDKQDPLAHPLLQWVISSNRSHIVKLPVNRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NYDRVMKALDSITSIREMTQAPYLEIKKQMDKQDPLAHPLLQWVISSNRSHIVKLPVNRQ
      560       570       580       590       600       610        

              670       680       690       700       710       720
pF1KB8 LKFMHTPHQFLLLSSPPAKESNFRAAKKLFGSTFAFHGSHIENWHSILRNGLVVASNTRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LKFMHTPHQFLLLSSPPAKESNFRAAKKLFGSTFAFHGSHIENWHSILRNGLVVASNTRL
      620       630       640       650       660       670        

              730       740       750       760       770       780
pF1KB8 QLHGAMYGSGIYLSPMSSISFGYSGMNKKQKVSAKDEPASSSKSSNTSQSQKKGQQSQFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QLHGAMYGSGIYLSPMSSISFGYSGMNKKQKVSAKDEPASSSKSSNTSQSQKKGQQSQFL
      680       690       700       710       720       730        

              790       800       810       820       830       840
pF1KB8 QSRNLKCIALCEVITSSDLHKHGEIWVVPNTDHVCTRFFFVYEDGQVGDANINTQEGGIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QSRNLKCIALCEVITSSDLHKHGEIWVVPNTDHVCTRFFFVYEDGQVGDANINTQEGGIH
      740       750       760       770       780       790        

              850    
pF1KB8 KEILRVIGNQTATG
       ::::::::::::::
CCDS54 KEILRVIGNQTATG
      800       810  

>>CCDS10241.2 PARP6 gene_id:56965|Hs108|chr15             (630 aa)
 initn: 2497 init1: 991 opt: 1955  Z-score: 2155.6  bits: 409.5 E(32554): 9.5e-114
Smith-Waterman score: 2383; 55.5% identity (72.4% similar) in 731 aa overlap (124-853:10-629)

           100       110       120       130       140       150   
pF1KB8 RKTNDINCCLSIKSKLQKENGEESRQNSTVEEDSEGDNDSEEFYYGGQVNYDGELHKHPQ
                                     ..::::::.:::: :: : .  ..:..:::
CCDS10                      MDIKGQFWNDDDSEGDNESEEFLYGVQGSCAADLYRHPQ
                                    10        20        30         

           160       170       180       190       200       210   
pF1KB8 LEADLSAVREIYGPHAVSLREYGAIDDVDIDLHIDVSFLDEEIAVAWEVIRTEPIIVRLH
       :.::. ::.:::. ..::.::::.::::::::::..::::::...::.:.:::::..::.
CCDS10 LDADIEAVKEIYSENSVSIREYGTIDDVDIDLHINISFLDEEVSTAWKVLRTEPIVLRLR
      40        50        60        70        80        90         

           220       230       240       250       260       270   
pF1KB8 CSLTQYLNGPVPTVDVFQISTKERFGLGHQLKKIMQTFVTQQWKQSKEKSNCLHNKKLSE
        ::.:::.:: :...::: :.:: :::: :::::.  :..::::                
CCDS10 FSLSQYLDGPEPSIEVFQPSNKEGFGLGLQLKKILGMFTSQQWK----------------
     100       110       120       130       140                   

           280       290       300       310       320       330   
pF1KB8 KKVKSPLHLFSTLRRSPSYPPPGCGKSKSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCV
              ::                 :.. ::..:.   : :. ..   :.:.:      
CCDS10 -------HL-----------------SNDFLKTQQE---KRHSWFK--ASGTIK------
                                   150          160                

           340       350       360       370       380       390   
pF1KB8 TKSHRTFGRSLSSDPRAEQAMTAIKSHKLLNRPCPAAVKSEECLTLKSHRLLTRSCSGDP
         . :. : :. :                   : :   ::     ...  :  ..  : :
CCDS10 --KFRA-GLSIFS-------------------PIP---KSPSFPIIQDSML--KGKLGVP
        170                           180          190         200 

           400       410       420       430       440       450   
pF1KB8 RCEHNTNLKPHKLLSRSYSSNLRMEELYGLKNHKLLSKSYSSAPKSSKTELFKEPNAEGR
       .      :.  .:..:: : ..                      :. :.:.:  : .   
CCDS10 E------LRVGRLMNRSISCTM----------------------KNPKVEVFGYPPSPQA
                   210                             220       230   

           460       470       480       490       500       510   
pF1KB8 RLSLTSGLIGILTPSSSSSSQLAPNGAKCIPVRDRGFLVQTIEFAEQRIPVLNEYCVVCD
        : :    .:.  :  . .: :. .  : ::. . ::::: ...::::::.:::::::::
CCDS10 GL-LCPQHVGL--PPPARTSPLVSGHCKNIPTLEYGFLVQIMKYAEQRIPTLNEYCVVCD
            240         250       260       270       280       290

           520       530       540       550       560       570   
pF1KB8 EPHVFQNGPMLRPTVCERELCVFAFQTLGVMNEAADEIATGAQVVDLLVSMCRSALESPR
       : :::::: ::.:.:: ::::::.: :::::. ::.:.::::.::::::.:::.::::::
CCDS10 EQHVFQNGSMLKPAVCTRELCVFSFYTLGVMSGAAEEVATGAEVVDLLVAMCRAALESPR
              300       310       320       330       340       350

           580       590       600       610       620       630   
pF1KB8 KVVIFEPYPSVVDPNDPQMLAFNPRKKNYDRVMKALDSITSIREMTQAPYLEIKKQMDKQ
       : .:::::::::::.::. :::::.::::.:..:::::. :::::::. :::::::::: 
CCDS10 KSIIFEPYPSVVDPTDPKTLAFNPKKKNYERLQKALDSVMSIREMTQGSYLEIKKQMDKL
              360       370       380       390       400       410

           640       650       660       670       680       690   
pF1KB8 DPLAHPLLQWVISSNRSHIVKLPVNRQLKFMHTPHQFLLLSSPPAKESNFRAAKKLFGST
       ::::::::::.::::::::::::..: :::::: :::::::::::::. ::.::::.:::
CCDS10 DPLAHPLLQWIISSNRSHIVKLPLSR-LKFMHTSHQFLLLSSPPAKEARFRTAKKLYGST
              420       430        440       450       460         

           700       710       720       730       740       750   
pF1KB8 FAFHGSHIENWHSILRNGLVVASNTRLQLHGAMYGSGIYLSPMSSISFGYSGMNKKQ-KV
       :::::::::::::::::::: :: :.:::::: ::.::::::.::::::::::.: : ..
CCDS10 FAFHGSHIENWHSILRNGLVNASYTKLQLHGAAYGKGIYLSPISSISFGYSGMGKGQHRM
     470       480       490       500       510       520         

            760       770       780       790       800       810  
pF1KB8 SAKDEPASSSKSSNTSQSQKKGQQSQFLQSRNLKCIALCEVITSSDLHKHGEIWVVPNTD
        .::: ..  .  ::   : .. ::.:::::::.::::::::::.::.:::.::: : .:
CCDS10 PSKDELVQRYNRMNTIP-QTRSIQSRFLQSRNLNCIALCEVITSKDLQKHGNIWVCPVSD
     530       540        550       560       570       580        

            820       830       840       850    
pF1KB8 HVCTRFFFVYEDGQVGDANINTQEGGIHKEILRVIGNQTATG
       :::::::::::::::::::::::.  :.:::.::::.:. : 
CCDS10 HVCTRFFFVYEDGQVGDANINTQDPKIQKEIMRVIGTQVYTN
      590       600       610       620       630




854 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:30:03 2016 done: Fri Nov  4 13:30:04 2016
 Total Scan time:  4.100 Total Display time:  0.120

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com