GENSCAN 1.0 Date run: 4-Nov-116 Time: 13:14:24 Sequence gi568815597f:62339868_62550978 : 211111 bp : 39.89% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Init + 4203 4394 192 2 0 28 81 183 0.205 10.73 1.02 Term + 7505 7744 240 1 0 15 41 228 0.603 5.84 1.03 PlyA + 11602 11607 6 1.05 2.00 Prom + 11729 11768 40 -3.85 2.01 Init + 13497 13690 194 2 2 69 -22 160 0.063 1.59 2.02 Intr + 21402 21630 229 0 1 64 93 232 0.753 18.25 2.03 Intr + 21672 21887 216 2 0 17 61 158 0.789 3.78 2.04 Term + 42327 42464 138 2 0 114 49 95 0.934 5.18 2.05 PlyA + 43121 43126 6 1.05 3.05 PlyA - 43438 43433 6 1.05 3.04 Term - 46256 46143 114 2 0 63 39 141 0.529 4.29 3.03 Intr - 58637 58449 189 2 0 53 47 111 0.325 2.36 3.02 Intr - 61733 61650 84 2 0 73 110 34 0.638 3.20 3.01 Init - 65647 65528 120 1 0 68 76 103 0.882 7.34 3.00 Prom - 84041 84002 40 -5.35 4.00 Prom + 86498 86537 40 -2.75 4.01 Init + 97378 97533 156 0 0 37 110 214 0.934 16.50 4.02 Intr + 99995 100170 176 1 2 11 48 125 0.239 -1.38 4.03 Intr + 101621 101741 121 2 1 80 99 16 0.700 1.48 4.04 Intr + 102328 102432 105 0 0 88 116 13 0.876 3.59 4.05 Intr + 103292 103452 161 1 2 96 65 86 0.963 4.96 4.06 Intr + 104841 105562 722 0 2 37 96 378 0.648 23.64 4.07 Intr + 107474 107644 171 0 0 87 80 194 0.998 17.49 4.08 Intr + 108598 108799 202 2 1 15 83 86 0.526 -1.78 4.09 Term + 110379 111114 736 0 1 91 40 518 0.976 39.25 4.10 PlyA + 111425 111430 6 1.05 5.09 PlyA - 111999 111994 6 1.05 5.08 Term - 115589 115547 43 1 1 112 37 65 0.855 -0.55 5.07 Intr - 117838 117671 168 0 0 86 85 146 0.899 12.24 5.06 Intr - 134221 134115 107 1 2 106 61 68 0.140 3.99 5.05 Intr - 135484 135341 144 1 0 68 92 142 0.988 12.16 5.04 Intr - 136076 135840 237 2 0 82 107 149 0.989 13.09 5.03 Intr - 136289 136200 90 2 0 97 75 100 0.998 8.87 5.02 Intr - 137967 137833 135 0 0 64 53 187 0.952 12.64 5.01 Init - 141876 141817 60 0 0 74 92 88 0.997 9.10 5.00 Prom - 142390 142351 40 -4.65 6.20 PlyA - 144104 144099 6 1.05 6.19 Term - 149198 148968 231 2 0 42 47 221 0.622 8.89 6.18 Intr - 152980 152837 144 1 0 79 31 150 0.718 7.96 6.17 Intr - 154600 154408 193 0 1 14 91 212 0.741 12.67 6.16 Intr - 155814 155714 101 0 2 77 69 55 0.731 0.49 6.15 Intr - 156630 156472 159 0 0 81 71 86 0.919 5.46 6.14 Intr - 164915 164763 153 2 0 69 101 75 0.971 6.25 6.13 Intr - 165949 165815 135 1 0 77 100 35 0.911 3.44 6.12 Intr - 168191 168095 97 1 1 42 110 107 0.976 7.39 6.11 Intr - 170806 170710 97 2 1 16 29 84 0.837 -6.55 6.10 Intr - 173739 173604 136 0 1 91 96 152 0.655 15.52 6.09 Intr - 174031 173849 183 1 0 91 106 24 0.913 3.56 6.08 Intr - 188438 188284 155 0 2 63 50 123 0.834 4.87 6.07 Intr - 189579 189410 170 2 2 87 82 156 0.988 13.57 6.06 Intr - 195765 195626 140 0 2 60 96 138 0.975 10.14 6.05 Intr - 198194 198024 171 2 0 39 85 82 0.803 2.22 6.04 Intr - 199791 199678 114 0 0 104 95 25 0.958 4.52 6.03 Intr - 200025 199885 141 0 0 82 90 108 0.884 10.03 6.02 Intr - 202836 202741 96 0 0 68 89 64 0.827 3.79 6.01 Intr - 203878 203789 90 1 0 87 71 40 0.535 1.47 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Term + 131135 131203 69 1 0 110 38 112 0.980 5.36 S.002 Term - 134221 134093 129 1 0 106 43 83 0.833 2.80 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815597f:62339868_62550978|GENSCAN_predicted_peptide_1|143_aa MQAVAIQWMGARIRELAALGAWSYLANNIPKVTQQLTGRRDSGKGREEGPGKRKPHLQTP GCKEALSQVIRGTRTKKGNRVPAPNEWMSDSLAETGQPRRTQTSMGLEVVPSSWCDTDFL DVLCLLPVELAELWGDGCPLWFT >gi568815597f:62339868_62550978|GENSCAN_predicted_CDS_1|432_bp atgcaggcggttgcaattcagtggatgggagccaggattcgggaactggctgctctggga gcatggagttaccttgccaataacatcccaaaggtgactcagcagctgacaggtaggagg gactcaggcaaaggaagagaagagggtcctggcaagaggaaaccccacttgcaaacacca ggatgcaaagaagcactgagccaggttatcaggggcacaagaacaaagaaaggcaacagg gtccctgcccctaatgaatggatgtctgactcgctggctgaaactggccagcctcggagg acccagacctccatggggctggaagtggtgccatcatcttggtgtgacacagacttcctg gatgtcctctgcctccttcctgtggagctggctgagctctggggagatggctgcccactg tggtttacctga >gi568815597f:62339868_62550978|GENSCAN_predicted_peptide_2|258_aa MGVKRLKGGKAGKGSLFGEWQGDHLTGISGAWGTVAMGVTGGVHEVTLEGPAGKRGALKS FQAGKKQSGEGEILWLLLTTSHEIAIAASWVLSPGAPEEPLPEVPLRSRSTGLQAKDSSL LHAEASLSGLTLSSCRHDLPQSQESANLASVLRSPPSVTVGAGPGPSRAGSTSVPVTALF EHSQEAAVPILFPTKQEPGYGSVAIAANSFHHQLLPPWVFLMHICTLHSVSESLSEEPTW QPQPRTEMPRITGNRATS >gi568815597f:62339868_62550978|GENSCAN_predicted_CDS_2|777_bp atgggagtcaagaggctaaaaggaggaaaggcaggaaagggaagcttgtttggagaatgg cagggtgaccacctgaccggaatttcaggggcttgggggacggtggcaatgggagtgaca ggaggagtacacgaggtgactctggaggggccagcaggcaagcggggagccctgaaaagt tttcaagcaggaaagaagcagtctggagagggagaaattctgtggctactgctgaccact tctcatgaaatcgccattgctgcatcatgggtgctgtctcctggtgcccctgaggagccg ctgcctgaggtgcccctgaggagccgcagcactgggctccaggcgaaggactcttccttg ctacatgctgaagcctcgctgtcagggctgaccctctccagctgcaggcatgatttgccc cagagccaggaatctgccaacctggcttctgtcctccgctcaccaccttctgtaacagtg ggagctggtccaggcccatcaagagcaggcagcacatcagtgccagtgacagctctgttc gaacatagccaagaagcagctgttcctatccttttcccaacaaagcaagagccgggatat ggctctgtggcaattgcagccaacagtttccatcaccaactattgcccccatgggtgttc ttgatgcacatctgcacactgcactctgtctcggagtcactctctgaagaacccacatgg caaccgcaaccacgcactgaaatgcctcgcattactggcaaccgagcaacttcatga >gi568815597f:62339868_62550978|GENSCAN_predicted_peptide_3|168_aa MRLPPPAGSTDWDLVPTVKGAECQVVEAMAVMFLLGQSHDEKYQNILTSVSIDDSYIPLK KANSMLQRGTHPYIKMHPLQDGASAHEVGRLYFTLGHPVVSVIVTKFWIWTTLKHPAFGS GLSHSKMDRSGGLEGQQAHSSASSNLAGSSLPVDCFDLRTSGTAPHEK >gi568815597f:62339868_62550978|GENSCAN_predicted_CDS_3|507_bp atgaggctgccgcctcctgcagggagcactgactgggatcttgttcctactgtcaaaggt gcagagtgtcaagtggtggaggcgatggcagtgatgtttctgctaggacaatctcatgat gaaaaataccaaaacattctaacaagtgtttccatagatgacagctacatccctttaaag aaagcaaactccatgttgcaaaggggaactcatccttatatcaaaatgcatccactccag gatggggcgtcagcccatgaagtgggacggctatacttcacactgggacaccctgtggtg tccgtgattgtgactaagttctggatatggacaaccctgaaacatccagcttttggaagt gggctctcccacagtaaaatggacaggagtgggggattggaagggcagcaagctcacagc tctgcctcctccaacttggccggttcctccttacccgtggactgctttgacctccgcact tcagggaccgccccgcatgaaaaataa >gi568815597f:62339868_62550978|GENSCAN_predicted_peptide_4|849_aa MVTPPRGGRADQIFLGPGTRRARGRDSPVAPTLIRVGLAGVTAADFALGHDQKKMPGVIP SESNGLSRGSPSKKNRLSLKFFQKKETKRALDFTDSQENEEKASEYRASEIDQVVPAAQS SPINCEKRENLLPFVGLNNLGNTCYLNSILQVLYFCPGFKSGVKHLFNIISRKKEALKDE ANQKDKGNCKEDSLASYELICSLQSLIISVEQLQASFLLNPEKYTDELATQPRRLLNTLR IDEMEIFIYRELNPMYEGYLQHDAQEVLQCILGNIQETCQLLKKEEVKNVAELPTKVEEI PHPKEEMNGINSIEMDSMRHSEDFKEKLPKGNGKRKSDTEFGNMKKKVKLSKEHQSLEEN QRQTRSKRKATSDTLESPPKIIPKYISENESPRPSQKKSRVKINWLKSATKQPSILSKFC SLGKITTNQGVKGQSKENECDPEEDLGKCESDNTTNGCGLESPGNTVTPVNVNEVKPINK GEEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISP EPKTEMKTLRWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFA ASGLEFDCYGGGLSKINTPLLTPLKLSLEEWSTKPTNDSYGLFAVVMHSGITISSGHYTA SVKVTDLNSLELDKGNFVVDQMCEIGKPEPLNEEEARGVVENYNDEEVSIRVGGNTQPSK VLNKKNVEAIGLLGGQKSKADYELYNKASNPDKVASTAFAENRNSETSDTTGTHESDRNK ESSDQTGINISGFENKISYVVQSLKEYEGKWLLFDDSEVKVTEEKDFLNSLSPSTSPTST PYLLFYKKL >gi568815597f:62339868_62550978|GENSCAN_predicted_CDS_4|2550_bp atggtcactcccccgcggggagggcgagccgaccagattttcctggggccggggacccgg cgggctcggggcagggactcacctgtcgcacccacactcattcgggttggacttgccggc gtcaccgccgcggacttcgctttgggccatgaccagaaaaaaatgcctggtgtcatacct agtgaaagtaatggactttcaagaggtagcccttcaaagaaaaacagactttccttaaag ttttttcagaaaaaggaaactaagagagctttggatttcacagattctcaagaaaatgaa gaaaaagcttctgaatatagagcatctgaaattgatcaagttgttcctgcagcacagtct tcacctataaactgtgagaagagagaaaacttgttaccatttgtgggactgaataatctc ggcaatacttgctatcttaatagtatacttcaggtattatatttttgtcccggttttaaa tctggagtaaagcacttatttaatattatttcaaggaagaaagaagctctaaaggatgaa gccaatcaaaaagacaagggaaattgcaaagaagattctttggcaagttatgaattgata tgcagtttacagtccttaatcatttcggttgaacagctccaggctagttttctcttaaat ccagagaaatatactgatgaacttgccactcagccaaggcgactgcttaacacactgaga atagatgaaatggaaatttttatttatagggaactcaaccctatgtatgaaggatatcta cagcatgatgcacaggaagtattacaatgtattttgggaaacattcaagaaacatgccaa ctcctaaaaaaagaagaagtaaaaaatgtggcagaattacctactaaggtagaagaaata cctcatccgaaagaggaaatgaatggtattaacagcatagagatggacagtatgaggcat tctgaagactttaaagagaaactcccaaaaggaaatgggaaaagaaaaagtgacactgaa tttggtaacatgaagaaaaaagttaaattatccaaggaacaccagtcattggaagagaac cagagacaaactagatcaaaaagaaaagctacaagtgatacattagagagtcctcctaaa ataattcccaagtatatttctgaaaatgagagtccaagaccctcacaaaagaaatcaaga gttaaaataaattggttaaagtctgcaactaagcaacccagcattctttctaaattttgt agtctgggaaaaataacaacaaaccaaggagtcaaaggacaatctaaagaaaatgaatgt gatcctgaagaggacttggggaagtgtgaaagtgataacacaactaatggttgtggactt gaatctccaggaaatactgttacacctgtaaatgttaatgaagttaaacccataaacaaa ggtgaagaacaaattggttttgagctagtggagaaattatttcaaggtcagctggtatta aggacgcgttgcttggaatgtgaaagtttaacagaaagaagagaagattttcaagacatc agtgtgccagtacaagaagatgagctttccaaagtagaggagagttctgaaatttctcca gagccaaaaacagaaatgaagaccctgagatgggcaatttcacaatttgcttcagtagaa aggattgtaggagaagataaatatttctgtgaaaactgccatcattatactgaagctgaa cgaagtcttttgtttgacaaaatgcctgaagttataactattcatttgaagtgctttgct gctagtggtttggagtttgattgttatggtggtggactttccaagatcaacactccttta ttgacacctcttaaattgtcactagaagaatggagcacaaagccaactaacgacagctat ggattatttgcggttgtgatgcatagtggcattacaattagtagtgggcattacactgct tctgttaaagtcactgaccttaacagtttagaactagataaaggaaattttgtggttgac caaatgtgtgaaataggtaagccagaaccattgaatgaggaggaagcaaggggtgtggtt gagaattataatgatgaagaagtgtcaattagagttggtggaaatacacagccaagtaaa gttttgaacaaaaaaaatgtagaagctattggacttcttggaggacaaaagagcaaagca gattatgagctatacaacaaagcctctaatcctgataaggttgctagtacagcgtttgct gaaaatagaaattctgagactagtgatactactgggacccatgaatctgatagaaacaag gaatccagtgaccaaacaggcattaatattagtggatttgagaacaaaatttcatacgta gtgcaaagcttaaaggagtatgaggggaagtggttgctttttgatgattctgaagtcaaa gttactgaagagaaggactttctgaattctctttccccttctacatctcctacttctact ccttacttgctattttataagaaattatag >gi568815597f:62339868_62550978|GENSCAN_predicted_peptide_5|327_aa MVDGFLRPGHSLITQRIVEADGKRMFGTYFRVGFYGTKFGDLDEQEFVYKEPAITKLAEI SHRLEGFYGERFGEDVVEVIKDSNPVDKCKLDPNKAYIQITYVEPYFDTYEMKDRITYFD KNYNLRRFMYCTPFTLDGRAHGELHEQFKRKTILTTSHAFPYIKTRVNVTHKEEIILTPI EVAIEDMQKKTQELAFATHQDPADPKMLQMVLQGSVGTTVNQGPLEVAQVFLSEIPSDPK LFRHHNKLRLCFKDFTKRCEDALRKNKSLIGPDQKEYQRELERNYHRLKEALQPLINRKI PQLYKAVLPVTCHRDSFSRMSLRKMDL >gi568815597f:62339868_62550978|GENSCAN_predicted_CDS_5|984_bp atggtagatggatttcttcgtcccggacatagtcttatcacccagaggattgtggaagca gatggtaagcggatgtttggcacctattttcgtgttggtttttatggaaccaagttcggg gatttggatgaacaagaatttgtttacaaggagcctgcaataaccaaacttgcagagata tctcacagattggagggattttacggagaaagatttggagaggatgtggttgaagtaatc aaagactctaatcctgtagacaagtgtaaattagatcctaacaaggcatatattcagatt acctatgtggagccatactttgacacatatgagatgaaggacagaatcacctatttcgac aaaaattacaatcttcgtcgattcatgtactgtacaccctttactttagatggccgtgcc catggggaacttcatgaacaattcaaaaggaagaccattctgactacgtctcatgccttt ccttatattaaaacaagggtcaatgtcactcataaagaagagatcatcttaacaccaatt gaagttgctattgaggacatgcagaaaaagacacaggagttggcatttgcaacacatcag gatcccgcagaccccaaaatgcttcagatggtactccagggatctgtaggcaccacagtg aatcaggggcctttggaagttgcccaggtttttctgtctgaaatacctagtgacccaaag ctcttcagacatcataataaactgcgactctgctttaaagattttactaaaaggtgtgaa gatgccttaagaaaaaataagagcttaattgggccggatcaaaaggagtatcaaagggaa ctggagagaaactatcatcgccttaaagaggccctacagccactgatcaacagaaagatc cctcagttatacaaggcagtattgcctgtcacctgccacagagattccttcagtcgaatg agccttcgcaaaatggatctctaa >gi568815597f:62339868_62550978|GENSCAN_predicted_peptide_6|901_aa AMDRSCNRMSSHTETSSFLQTLTGRLPTKKLFHEELALQWVVCSGSVRESALQQAWFFFE LMVKSMVHHLYFNDKLEAPRKSRFPERFMDDIAALVSTIASDIVSRFQKDTEMVERLNTS LAFFLNDLLSVMDRGFVFSLIKSCYKQVSSKLYSLPNPSVLVSLRLDFLRIICSHEHYVT LNLPCSLLTPPASPSPSVSSATSQSSGFSTNVQDQKIANMFELSVPFRQQHYLAGLVLTE LAVILDPDAEGLFGLHKKVINMVHNLLSSHDSDPRYSDPQIKARVAMLYLPLIGIIMETV PQLYDFTETHNQRGRPICIATDDYESESGSMISQTVAMAIAGTSVPQLTRPGSFLLTSTS GRQHTTFSAESSRSLLICLLWVLKNADETVLQKWFTDLSVLQLNRLLDLLYLCVSCFEYK GKKVFERMNSLTFKKSKDMRAKLEEAILGSIGARQEMVRRSRGQLERSPSGSAFGSQENL RWRKDMTHWRQNTEKLDKSRAEIEHEALIDGNLATEANLIILDTLEIVVQTVSVTESKES ILGGVLKVLLHSMACNQSAVYLQHCFATQRALVSKFPELLFEEETEQCADLCLRLLRHCS SSIGTIRSHASASLYLLMRQNFEIGNNFARVKMQVTMSLSSLVGTSQNFNEEFLRRSLKT ILTYAEEDLELRETTFPDQVQDLVFNLHMILSDTVKMKEHQEDPEMLIDLMYRIAKGYQT SPDLRLTWLQNMAGKHSERSNHAEAAQCLVHSAALVAEYLSMLEDRKYLPVGCVTFQNIS SNVLEESAVSDDVVSPDEEGICSGKYFTESGLVGLLEQAAASFSMAGMYEAVNEVYKVLI PIHEANRDAKKLSTIHGKLQEAFSKIVHQVMIPISSFTIKGKNCLKALMLFCTDVKLDPV K >gi568815597f:62339868_62550978|GENSCAN_predicted_CDS_6|2706_bp gctatggatcgaagttgtaatcgtatgtcttcgcacacagagacgtcaagtttcttacaa acattaacgggacgcttaccaactaaaaagctttttcacgaggagctggctttgcagtgg gttgtttgcagtggcagcgttcgggaatcagctttgcaacaagcctggttcttttttgaa ttaatggtaaagagcatggtgcaccatttatactttaatgataaacttgaggctccaagg aaaagtcgttttccagaacgtttcatggatgacattgcagctcttgtcagcacgattgct agtgatatagtttcacgatttcagaaggacacagaaatggttgagagactcaatacaagc cttgcattctttctcaatgatctgttgtctgttatggacagaggatttgtttttagcctt ataaagtcctgctataaacaggtgtcttcaaagctttactcattaccgaatcccagtgtt ctggtgtccttgaggctggattttctacgaatcatctgcagtcatgagcactatgttaca ttaaacttaccctgcagcttacttactccacctgcatctccatcaccttctgtttcttct gcaacatctcagagttctggattttctacgaatgtacaagaccaaaagattgcaaatatg tttgaattatccgtgcctttccgccaacagcattatttggcaggacttgtgttaacagag ctggctgtcattttagaccctgatgctgaaggactgtttggattgcataagaaagtcatc aatatggtacacaatttactctccagtcacgactcagacccgcggtactctgaccctcag ataaaggctcgagtggccatgttgtatctacctctgattggtattatcatggaaactgta cctcagctgtatgattttacagaaactcacaatcaacgaggaagaccaatttgtatagcc actgatgattatgaaagtgagagcggaagtatgataagccagaccgttgccatggcaatc gcagggacatcggtccctcaactaacaaggcctggcagtttcctcctcacgtcaacgagt ggcaggcaacacactaccttttcagcagaatcaagtcgaagccttttgatctgtctactt tgggttctcaaaaatgcagatgaaacagttctacagaagtggtttacagatctctcagtc ttgcagctaaaccggctattagatctgctttatctctgtgtgtcttgctttgagtataaa gggaaaaaagtgtttgaacgaatgaatagcttgacctttaagaaatcaaaagacatgaga gcaaagcttgaagaagctattcttgggagcataggtgccaggcaagaaatggtacggcga agccgaggacagctcgagagaagcccatctggaagtgcctttggaagtcaagaaaatttg aggtggaggaaagatatgactcactggcgtcaaaacacagagaagcttgacaaatcaaga gcagagattgaacacgaagcactgattgatggaaacctggctacagaagcaaacctaatc attttagatacattagagattgttgttcagaccgtttctgtaacggaatccaaagagagc attcttggtggagtgctaaaagtgctactacacagcatggcctgtaaccaaagtgcagtt tatctacaacactgttttgctacacagagagccttggtttcaaagtttcctgaactctta tttgaagaagagacagagcagtgtgctgatttatgcctcaggcttctccgacactgtagc agtagcatcggtacaatacggtcacacgccagtgcctccctttacctactaatgaggcaa aactttgagattgggaataactttgccagggttaaaatgcaggtaacaatgtcactatcc tccttggtgggcacatctcagaattttaatgaagaattcttaagacgttctctaaagact atattgacatatgctgaagaagatctggaattgagggaaacaacatttcctgatcaggtc caggatctggttttcaatctccatatgattctttctgatactgtgaaaatgaaggaacac caggaggatcctgaaatgttgattgatctaatgtacagaattgccaagggttaccagacc tctccagatctgcgattgacctggttgcagaacatggcaggcaagcactcagaacgaagc aatcatgctgaagctgcacagtgtctagtccactcagcagcacttgttgctgaatatttg agcatgctggaggaccggaaatatcttcctgtgggatgtgtaacatttcagaatatttca tctaatgttttagaagaatctgcggtctcagatgatgtggtatctccagatgaagaaggt atctgctctggaaaatactttactgagtcaggacttgtgggattactggaacaagcagct gcttccttctctatggctggcatgtatgaagcagttaatgaagtttacaaagtacttatt cctattcatgaagctaatcgggatgcaaagaaactatccacaattcatggtaaacttcaa gaagcattcagcaaaattgttcatcaggtaatgattccaatttctagcttcactataaag ggaaaaaactgtctgaaagcattaatgttgttttgcactgatgtcaaactagatcccgtg aaatga